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4NAQ
Asym. Unit
Info
Asym.Unit (356 KB)
Biol.Unit 1 (348 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF PORCINE AMINOPEPTIDASE-N COMPLEXED WITH POLY-ALANINE
Authors
:
L. Chen, Y. L. Lin, G. Peng, F. Li
Date
:
22 Oct 13 (Deposition) - 04 Dec 13 (Release) - 04 Dec 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.10
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Zinc-Aminopeptidase, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
L. Chen, Y. L. Lin, G. Peng, F. Li
Structural Basis For Multifunctional Roles Of Mammalian Aminopeptidase N.
Proc. Natl. Acad. Sci. Usa V. 109 17966 2012
[
close entry info
]
Hetero Components
(3, 27)
Info
All Hetero Components
1a: N-ACETYL-D-GLUCOSAMINE (NAGa)
1b: N-ACETYL-D-GLUCOSAMINE (NAGb)
1c: N-ACETYL-D-GLUCOSAMINE (NAGc)
1d: N-ACETYL-D-GLUCOSAMINE (NAGd)
1e: N-ACETYL-D-GLUCOSAMINE (NAGe)
1f: N-ACETYL-D-GLUCOSAMINE (NAGf)
1g: N-ACETYL-D-GLUCOSAMINE (NAGg)
1h: N-ACETYL-D-GLUCOSAMINE (NAGh)
1i: N-ACETYL-D-GLUCOSAMINE (NAGi)
1j: N-ACETYL-D-GLUCOSAMINE (NAGj)
1k: N-ACETYL-D-GLUCOSAMINE (NAGk)
1l: N-ACETYL-D-GLUCOSAMINE (NAGl)
1m: N-ACETYL-D-GLUCOSAMINE (NAGm)
1n: N-ACETYL-D-GLUCOSAMINE (NAGn)
1o: N-ACETYL-D-GLUCOSAMINE (NAGo)
2a: SULFATE ION (SO4a)
2b: SULFATE ION (SO4b)
2c: SULFATE ION (SO4c)
2d: SULFATE ION (SO4d)
2e: SULFATE ION (SO4e)
2f: SULFATE ION (SO4f)
2g: SULFATE ION (SO4g)
2h: SULFATE ION (SO4h)
2i: SULFATE ION (SO4i)
2j: SULFATE ION (SO4j)
2k: SULFATE ION (SO4k)
3a: ZINC ION (ZNa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
NAG
15
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
2
SO4
11
Ligand/Ion
SULFATE ION
3
ZN
1
Ligand/Ion
ZINC ION
[
close Hetero Component info
]
Sites
(23, 23)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
THR A:84 , ARG A:86 , LYS A:100 , GLY A:101 , LYS A:102 , ILE A:233 , HOH A:1551 , HOH A:1688
BINDING SITE FOR RESIDUE SO4 A 1019
02
AC2
SOFTWARE
PRO A:318 , ASN A:321 , HIS A:419 , HOH A:1816
BINDING SITE FOR RESIDUE SO4 A 1020
03
AC3
SOFTWARE
PHE A:467 , ASP A:468 , TYR A:472 , SO4 A:1024
BINDING SITE FOR RESIDUE SO4 A 1021
04
AC4
SOFTWARE
TYR A:748 , ASN A:752 , HOH A:1529 , HOH A:1845
BINDING SITE FOR RESIDUE SO4 A 1022
05
AC5
SOFTWARE
PHE A:364 , PRO A:366 , SER A:369 , SER A:370 , ILE A:371 , HOH A:1542
BINDING SITE FOR RESIDUE SO4 A 1023
06
AC6
SOFTWARE
TYR A:411 , ARG A:480 , ASN A:484 , HOH A:1548 , HOH A:1654 , HOH A:1788
BINDING SITE FOR RESIDUE SO4 A 1016
07
AC7
SOFTWARE
ASP A:468 , SER A:469 , SO4 A:1021 , HOH A:1616
BINDING SITE FOR RESIDUE SO4 A 1024
08
AC8
SOFTWARE
LYS A:716 , ARG A:720 , GLY A:802 , GLN A:803
BINDING SITE FOR RESIDUE SO4 A 1017
09
AC9
SOFTWARE
PRO A:222 , THR A:395 , LEU A:396 , TRP A:398 , TRP A:399 , HOH A:1624
BINDING SITE FOR RESIDUE SO4 A 1025
10
BC1
SOFTWARE
LEU A:341 , PRO A:342 , ASP A:343 , ARG A:358 , GLU A:359 , ASN A:360 , VAL A:819 , HOH A:1872
BINDING SITE FOR RESIDUE SO4 A 1018
11
BC2
SOFTWARE
MET A:194 , GLU A:195 , GLY A:196 , ASN A:302 , HOH A:1701 , HOH A:1782
BINDING SITE FOR RESIDUE SO4 A 1026
12
BC3
SOFTWARE
HIS A:383 , HIS A:387 , GLU A:406 , ALA B:1 , ALA B:2 , HOH B:104
BINDING SITE FOR RESIDUE ZN A 1027
13
BC4
SOFTWARE
ASN A:82 , ILE A:104 , GLU A:172 , LYS A:247 , NAG A:1004 , HOH A:1702
BINDING SITE FOR CHAIN A OF SUGAR BOUND TO ASN A 82 RESIDUES 1001 TO 1002
14
BC5
SOFTWARE
ASN A:124 , GLN A:178 , GLY A:179 , GLU A:180 , HOH A:1563
BINDING SITE FOR MONO-SACCHARIDE NAG A1003 BOUND TO ASN A 124
15
BC6
SOFTWARE
SER A:80 , ASN A:82 , ARG A:106 , ASN A:229 , THR A:266 , NAG A:1001 , HOH A:1381 , HOH A:1632 , HOH A:1747
BINDING SITE FOR CHAIN A OF SUGAR BOUND TO ASN A 229 RESIDUES 1004 TO 1005
16
BC7
SOFTWARE
LYS A:200 , ASN A:237 , GLU A:281
BINDING SITE FOR MONO-SACCHARIDE NAG A1006 BOUND TO ASN A 237
17
BC8
SOFTWARE
TYR A:311 , ASN A:314 , LYS A:374
BINDING SITE FOR MONO-SACCHARIDE NAG A1007 BOUND TO ASN A 314
18
BC9
SOFTWARE
LEU A:108 , CYS A:109 , GLN A:110 , GLY A:168 , ASN A:328 , HOH A:1591
BINDING SITE FOR CHAIN A OF SUGAR BOUND TO ASN A 328 RESIDUES 1008 TO 1009
19
CC1
SOFTWARE
ALA A:223 , PHE A:502 , GLN A:505 , ASN A:506 , HOH A:1338 , HOH A:1385 , HOH A:1503 , HOH A:1610 , HOH A:1653 , HOH A:1769
BINDING SITE FOR CHAIN A OF SUGAR BOUND TO ASN A 506 RESIDUES 1010 TO 1011
20
CC2
SOFTWARE
ASP A:551 , ASN A:556
BINDING SITE FOR MONO-SACCHARIDE NAG A1012 BOUND TO ASN A 556
21
CC3
SOFTWARE
ASP A:428 , ASN A:622 , HOH A:1188 , HOH A:1579 , HOH A:1863
BINDING SITE FOR CHAIN A OF SUGAR BOUND TO ASN A 622 RESIDUES 1013 TO 1014
22
CC4
SOFTWARE
ASN A:646 , VAL A:649 , HOH A:1487 , HOH A:1629
BINDING SITE FOR MONO-SACCHARIDE NAG A1015 BOUND TO ASN A 646
23
CC5
SOFTWARE
GLN A:208 , ALA A:348 , MET A:349 , GLU A:350 , VAL A:380 , HIS A:383 , GLN A:384 , GLU A:406 , SER A:410 , GLU A:413 , TYR A:414 , GLY A:433 , ASP A:434 , ARG A:437 , TYR A:472 , ZN A:1027 , HOH A:1571 , HOH A:1784 , HOH A:1856 , HOH B:101 , HOH B:102 , HOH B:103 , HOH B:104 , HOH B:105
BINDING SITE FOR CHAIN B OF POLY A PEPTIDE
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
Info
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;
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Sorry, no Info available
[
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
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Sorry, no Info available
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CATH Domains
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Sorry, no Info available
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Pfam Domains
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Asymmetric Unit 1
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select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
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wireframe 100
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View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
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Asym.Unit (356 KB)
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Header - Biol.Unit 1
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