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4N99
Asym. Unit
Info
Asym.Unit (128 KB)
Biol.Unit 1 (122 KB)
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(1)
Title
:
E. COLI SLIDING CLAMP IN COMPLEX WITH 6-CHLORO-2,3,4,9-TETRAHYDRO-1H-CARBAZOLE-7-CARBOXYLIC ACID
Authors
:
Z. Yin, A. J. Oakley
Date
:
19 Oct 13 (Deposition) - 06 Nov 13 (Release) - 09 Apr 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.30
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Poliii Beta, Sliding Clamp, Dnan, Transferase-Transferase Inhibitor Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
Z. Yin, L. R. Whittell, Y. Wang, S. Jergic, M. Liu, E. J. Harry, N. E. Dixon, J. L. Beck, M. J. Kelso, A. J. Oakley
Discovery Of Lead Compounds Targeting The Bacterial Sliding Clamp Using A Fragment-Based Approach.
J. Med. Chem. V. 57 2799 2014
[
close entry info
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Hetero Components
(4, 35)
Info
All Hetero Components
1a: 6-CHLORO-2,3,4,9-TETRAHYDRO-1H-CAR... (2J1a)
2a: CALCIUM ION (CAa)
2b: CALCIUM ION (CAb)
2c: CALCIUM ION (CAc)
2d: CALCIUM ION (CAd)
2e: CALCIUM ION (CAe)
3a: DI(HYDROXYETHYL)ETHER (PEGa)
3b: DI(HYDROXYETHYL)ETHER (PEGb)
3c: DI(HYDROXYETHYL)ETHER (PEGc)
3d: DI(HYDROXYETHYL)ETHER (PEGd)
3e: DI(HYDROXYETHYL)ETHER (PEGe)
3f: DI(HYDROXYETHYL)ETHER (PEGf)
3g: DI(HYDROXYETHYL)ETHER (PEGg)
3h: DI(HYDROXYETHYL)ETHER (PEGh)
3i: DI(HYDROXYETHYL)ETHER (PEGi)
3j: DI(HYDROXYETHYL)ETHER (PEGj)
3k: DI(HYDROXYETHYL)ETHER (PEGk)
3l: DI(HYDROXYETHYL)ETHER (PEGl)
3m: DI(HYDROXYETHYL)ETHER (PEGm)
3n: DI(HYDROXYETHYL)ETHER (PEGn)
3o: DI(HYDROXYETHYL)ETHER (PEGo)
3p: DI(HYDROXYETHYL)ETHER (PEGp)
3q: DI(HYDROXYETHYL)ETHER (PEGq)
3r: DI(HYDROXYETHYL)ETHER (PEGr)
3s: DI(HYDROXYETHYL)ETHER (PEGs)
4a: TETRAETHYLENE GLYCOL (PG4a)
4b: TETRAETHYLENE GLYCOL (PG4b)
4c: TETRAETHYLENE GLYCOL (PG4c)
4d: TETRAETHYLENE GLYCOL (PG4d)
4e: TETRAETHYLENE GLYCOL (PG4e)
4f: TETRAETHYLENE GLYCOL (PG4f)
4g: TETRAETHYLENE GLYCOL (PG4g)
4h: TETRAETHYLENE GLYCOL (PG4h)
4i: TETRAETHYLENE GLYCOL (PG4i)
4j: TETRAETHYLENE GLYCOL (PG4j)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
2J1
1
Ligand/Ion
6-CHLORO-2,3,4,9-TETRAHYDRO-1H-CARBAZOLE-7-CARBOXYLICACID
2
CA
5
Ligand/Ion
CALCIUM ION
3
PEG
19
Ligand/Ion
DI(HYDROXYETHYL)ETHER
4
PG4
10
Ligand/Ion
TETRAETHYLENE GLYCOL
[
close Hetero Component info
]
Sites
(34, 34)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
30: DC3 (SOFTWARE)
31: DC4 (SOFTWARE)
32: DC5 (SOFTWARE)
33: DC6 (SOFTWARE)
34: DC7 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ARG A:152 , GLY A:174 , PRO A:242 , VAL A:247 , SER A:346 , MET A:362 , HOH A:523
BINDING SITE FOR RESIDUE 2J1 A 401
02
AC2
SOFTWARE
ARG A:103 , SER A:286 , GLU A:287 , GLN A:289 , PG4 A:416
BINDING SITE FOR RESIDUE PEG A 402
03
AC3
SOFTWARE
TRP A:122 , GLN A:217 , ARG A:224 , HOH A:520 , ALA B:38
BINDING SITE FOR RESIDUE PEG A 403
04
AC4
SOFTWARE
ALA A:268 , ARG A:279 , LEU A:325 , ASP B:77 , ARG B:80 , GLY B:81
BINDING SITE FOR RESIDUE PG4 A 404
05
AC5
SOFTWARE
GLN A:36 , SER A:43 , ARG A:56 , ILE A:231
BINDING SITE FOR RESIDUE PEG A 405
06
AC6
SOFTWARE
ARG A:80 , GLY A:81 , PRO A:83 , GLN B:265
BINDING SITE FOR RESIDUE PEG A 406
07
AC7
SOFTWARE
ALA A:58
BINDING SITE FOR RESIDUE CA A 407
08
AC8
SOFTWARE
SER A:181 , GLN A:348 , GLN A:355 , SER A:356 , HOH A:548
BINDING SITE FOR RESIDUE PEG A 408
09
AC9
SOFTWARE
GLU A:316 , LEU A:366
BINDING SITE FOR RESIDUE CA A 409
10
BC1
SOFTWARE
PRO A:83 , GLY A:102 , ARG A:103 , SER A:104 , PG4 A:415 , HOH A:583 , ARG B:269
BINDING SITE FOR RESIDUE PG4 A 410
11
BC2
SOFTWARE
ASP A:229
BINDING SITE FOR RESIDUE CA A 411
12
BC3
SOFTWARE
LEU A:262 , ALA A:266 , ARG A:269 , ILE A:305 , LEU A:306 , ASP A:307 , HOH A:565 , PG4 B:401 , PEG B:415
BINDING SITE FOR RESIDUE PEG A 412
13
BC4
SOFTWARE
GLU A:64 , PRO B:189
BINDING SITE FOR RESIDUE PEG A 413
14
BC5
SOFTWARE
GLN A:299 , GLU A:301 , SER B:107 , TYR B:284 , PG4 B:412
BINDING SITE FOR RESIDUE PEG A 414
15
BC6
SOFTWARE
PRO A:112 , ALA A:114 , ASP A:115 , PG4 A:410 , ILE B:305 , LEU B:306
BINDING SITE FOR RESIDUE PG4 A 415
16
BC7
SOFTWARE
ARG A:105 , GLN A:289 , PEG A:402 , HOH A:596 , ILE B:305 , PG4 B:412
BINDING SITE FOR RESIDUE PG4 A 416
17
BC8
SOFTWARE
GLU A:314
BINDING SITE FOR RESIDUE CA A 417
18
BC9
SOFTWARE
ARG A:137
BINDING SITE FOR RESIDUE PEG A 418
19
CC1
SOFTWARE
LEU A:262 , ARG A:269 , PEG A:412 , HOH A:599 , PRO B:83 , PEG B:415 , HOH B:513
BINDING SITE FOR RESIDUE PG4 B 401
20
CC2
SOFTWARE
SER B:18 , ARG B:73 , PHE B:76 , ARG B:80 , PEG B:416 , HOH B:551 , HOH B:576
BINDING SITE FOR RESIDUE PG4 B 402
21
CC3
SOFTWARE
GLU B:52 , ARG B:56 , ASN B:118 , LEU B:119 , HOH B:555
BINDING SITE FOR RESIDUE PEG B 403
22
CC4
SOFTWARE
ARG A:152 , ARG B:7 , ARG B:80 , LEU B:82 , HOH B:580
BINDING SITE FOR RESIDUE PG4 B 404
23
CC5
SOFTWARE
ALA A:38 , ARG B:215 , GLN B:217 , ARG B:224 , HIS B:226 , ILE B:231 , PEG B:413
BINDING SITE FOR RESIDUE PEG B 405
24
CC6
SOFTWARE
LYS B:264 , GLN B:265 , ALA B:268 , ALA B:271 , ARG B:279 , LEU B:325 , ASN B:329
BINDING SITE FOR RESIDUE PG4 B 406
25
CC7
SOFTWARE
ASP B:229
BINDING SITE FOR RESIDUE PEG B 407
26
CC8
SOFTWARE
GLU B:50 , TYR B:153 , ASN B:156 , GLY B:157 , PRO B:196 , ARG B:197
BINDING SITE FOR RESIDUE PEG B 408
27
CC9
SOFTWARE
GLU A:276 , ARG B:73 , LYS B:74 , PEG B:416
BINDING SITE FOR RESIDUE PEG B 410
28
DC1
SOFTWARE
GLN A:123 , GLU A:125 , ALA B:67 , GLY B:94 , PRO B:112 , ALA B:113 , ALA B:114
BINDING SITE FOR RESIDUE PG4 B 411
29
DC2
SOFTWARE
GLU A:301 , GLU A:303 , PEG A:414 , PG4 A:416 , ARG B:105 , SER B:107 , TYR B:284 , SER B:286
BINDING SITE FOR RESIDUE PG4 B 412
30
DC3
SOFTWARE
ASP B:121 , TRP B:122 , SER B:124 , ARG B:224 , PEG B:405
BINDING SITE FOR RESIDUE PEG B 413
31
DC4
SOFTWARE
SER B:181 , GLN B:348 , GLN B:355 , SER B:356 , HOH B:603
BINDING SITE FOR RESIDUE PEG B 414
32
DC5
SOFTWARE
ARG A:269 , ILE A:305 , PEG A:412 , LEU B:82 , PRO B:83 , ALA B:86 , SER B:101 , ARG B:103 , SER B:104 , PG4 B:401 , HOH B:600
BINDING SITE FOR RESIDUE PEG B 415
33
DC6
SOFTWARE
PRO B:25 , ARG B:73 , PG4 B:402 , PEG B:410
BINDING SITE FOR RESIDUE PEG B 416
34
DC7
SOFTWARE
GLU B:93 , SER B:107
BINDING SITE FOR RESIDUE CA B 417
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 6)
Info
All SCOP Domains
1a: SCOP_d4n99a1 (A:1-122)
1b: SCOP_d4n99a2 (A:123-244)
1c: SCOP_d4n99a3 (A:245-366)
1d: SCOP_d4n99b1 (B:1-122)
1e: SCOP_d4n99b2 (B:123-244)
1f: SCOP_d4n99b3 (B:245-366)
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
DNA clamp
(88)
Superfamily
:
DNA clamp
(88)
Family
:
DNA polymerase III, beta subunit
(31)
Protein domain
:
DNA polymerase III, beta subunit
(31)
Escherichia coli [TaxId: 562]
(30)
1a
d4n99a1
A:1-122
1b
d4n99a2
A:123-244
1c
d4n99a3
A:245-366
1d
d4n99b1
B:1-122
1e
d4n99b2
B:123-244
1f
d4n99b3
B:245-366
[
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]
CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
(0, 0)
Info
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Sorry, no Info available
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