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4N95
Asym. Unit
Info
Asym.Unit (133 KB)
Biol.Unit 1 (128 KB)
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(1)
Title
:
E. COLI SLIDING CLAMP IN COMPLEX WITH 5-CHLOROINDOLINE-2,3-DIONE
Authors
:
Z. Yin, A. J. Oakley
Date
:
19 Oct 13 (Deposition) - 06 Nov 13 (Release) - 09 Apr 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.80
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Sliding Clamp, Dnan, Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
Z. Yin, L. R. Whittell, Y. Wang, S. Jergic, M. Liu, E. J. Harry, N. E. Dixon, J. L. Beck, M. J. Kelso, A. J. Oakley
Discovery Of Lead Compounds Targeting The Bacterial Sliding Clamp Using A Fragment-Based Approach.
J. Med. Chem. V. 57 2799 2014
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Hetero Components
(6, 14)
Info
All Hetero Components
1a: 5-CHLORO-1H-INDOLE-2,3-DIONE (2HQa)
2a: CALCIUM ION (CAa)
2b: CALCIUM ION (CAb)
2c: CALCIUM ION (CAc)
2d: CALCIUM ION (CAd)
3a: CHLORIDE ION (CLa)
4a: DI(HYDROXYETHYL)ETHER (PEGa)
4b: DI(HYDROXYETHYL)ETHER (PEGb)
4c: DI(HYDROXYETHYL)ETHER (PEGc)
4d: DI(HYDROXYETHYL)ETHER (PEGd)
4e: DI(HYDROXYETHYL)ETHER (PEGe)
5a: TETRAETHYLENE GLYCOL (PG4a)
5b: TETRAETHYLENE GLYCOL (PG4b)
6a: TRIETHYLENE GLYCOL (PGEa)
View:
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Label:
No.
Name
Count
Type
Full Name
1
2HQ
1
Ligand/Ion
5-CHLORO-1H-INDOLE-2,3-DIONE
2
CA
4
Ligand/Ion
CALCIUM ION
3
CL
1
Ligand/Ion
CHLORIDE ION
4
PEG
5
Ligand/Ion
DI(HYDROXYETHYL)ETHER
5
PG4
2
Ligand/Ion
TETRAETHYLENE GLYCOL
6
PGE
1
Ligand/Ion
TRIETHYLENE GLYCOL
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Sites
(14, 14)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
View:
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASP A:121 , TRP A:122 , GLN A:123 , SER A:124 , GLN A:217 , ARG A:224 , HOH A:644 , VAL B:37 , ALA B:38 , GLY B:66
BINDING SITE FOR RESIDUE PG4 B 401
02
AC2
SOFTWARE
SER B:18 , LEU B:21 , ARG B:73 , PHE B:76 , ARG B:80 , HOH B:746
BINDING SITE FOR RESIDUE PG4 B 402
03
AC3
SOFTWARE
HOH A:691 , ASP B:121 , TRP B:122 , GLN B:123 , SER B:124 , GLN B:217 , ARG B:224 , HOH B:546
BINDING SITE FOR RESIDUE PEG B 403
04
AC4
SOFTWARE
GLU B:87 , ALA B:89 , ARG B:100 , SER B:101 , GLY B:102 , GLU B:287 , HOH B:760
BINDING SITE FOR RESIDUE PEG B 404
05
AC5
SOFTWARE
THR A:172 , GLY A:174 , HIS A:175 , ARG A:176 , VAL A:247 , VAL A:360
BINDING SITE FOR RESIDUE 2HQ A 401
06
AC6
SOFTWARE
SER A:181 , GLU A:350 , GLN A:355 , SER A:356
BINDING SITE FOR RESIDUE PEG A 402
07
AC7
SOFTWARE
MET A:1 , GLU A:64 , PRO A:65 , ALA A:67 , GLU B:125
BINDING SITE FOR RESIDUE PEG A 403
08
AC8
SOFTWARE
ARG A:105 , TYR A:284 , VAL A:285 , GLU A:314 , MET A:315 , GLU B:303 , ILE B:305
BINDING SITE FOR RESIDUE PEG A 404
09
AC9
SOFTWARE
ALA A:58
BINDING SITE FOR RESIDUE CL A 405
10
BC1
SOFTWARE
ARG A:246 , LEU A:248 , LYS A:250 , SER A:346 , HOH A:561
BINDING SITE FOR RESIDUE PGE A 406
11
BC2
SOFTWARE
GLU A:95 , THR A:110 , HOH A:643 , HOH A:708
BINDING SITE FOR RESIDUE CA A 407
12
BC3
SOFTWARE
ASN A:32 , PRO A:71 , SER A:109 , THR A:110 , LEU A:111 , GLU B:334
BINDING SITE FOR RESIDUE CA A 408
13
BC4
SOFTWARE
HIS A:226
BINDING SITE FOR RESIDUE CA A 409
14
BC5
SOFTWARE
GLY A:85 , GLU A:87 , HOH A:711 , ASP B:120
BINDING SITE FOR RESIDUE CA A 410
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 6)
Info
All SCOP Domains
1a: SCOP_d4n95a1 (A:1-122)
1b: SCOP_d4n95a2 (A:123-244)
1c: SCOP_d4n95a3 (A:245-365)
1d: SCOP_d4n95b1 (B:1-122)
1e: SCOP_d4n95b2 (B:123-244)
1f: SCOP_d4n95b3 (B:245-365)
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Protein Domains
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(
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Organisms
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(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
DNA clamp
(88)
Superfamily
:
DNA clamp
(88)
Family
:
DNA polymerase III, beta subunit
(31)
Protein domain
:
DNA polymerase III, beta subunit
(31)
Escherichia coli [TaxId: 562]
(30)
1a
d4n95a1
A:1-122
1b
d4n95a2
A:123-244
1c
d4n95a3
A:245-365
1d
d4n95b1
B:1-122
1e
d4n95b2
B:123-244
1f
d4n95b3
B:245-365
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CATH Domains
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Pfam Domains
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Asymmetric Unit 1
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Asym.Unit (133 KB)
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