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Getting 'Biological Unit' information from database.
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Getting 'Exon' information from database.
4N8E
Asym. Unit
Info
Asym.Unit (532 KB)
Biol.Unit 1 (524 KB)
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(1)
Title
:
DPP4 COMPLEXED WITH COMPOUND 12A
Authors
:
N. Ostermann, F. Zink, M. Kroemer
Date
:
17 Oct 13 (Deposition) - 12 Feb 14 (Release) - 12 Feb 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.30
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
K. Namoto, F. Sirockin, N. Ostermann, F. Gessier, S. Flohr, R. Sedrani B. Gerhartz, J. Trappe, U. Hassiepen, A. Duttaroy, S. Ferreira, J. M. Sutton, D. E. Clark, G. Fenton, M. Beswick, D. K. Baeschlin
Discovery Of C-(1-Aryl-Cyclohexyl)-Methylamines As Selective, Orally Available Inhibitors Of Dipeptidyl Peptidase Iv.
Bioorg. Med. Chem. Lett. V. 24 731 2014
[
close entry info
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Hetero Components
(4, 25)
Info
All Hetero Components
1a: 1-[CIS-4-(AMINOMETHYL)-4-(3-CHLORO... (2KVa)
1b: 1-[CIS-4-(AMINOMETHYL)-4-(3-CHLORO... (2KVb)
2a: ALPHA-D-MANNOSE (MANa)
2b: ALPHA-D-MANNOSE (MANb)
2c: ALPHA-D-MANNOSE (MANc)
3a: N-ACETYL-D-GLUCOSAMINE (NAGa)
3b: N-ACETYL-D-GLUCOSAMINE (NAGb)
3c: N-ACETYL-D-GLUCOSAMINE (NAGc)
3d: N-ACETYL-D-GLUCOSAMINE (NAGd)
3e: N-ACETYL-D-GLUCOSAMINE (NAGe)
3f: N-ACETYL-D-GLUCOSAMINE (NAGf)
3g: N-ACETYL-D-GLUCOSAMINE (NAGg)
3h: N-ACETYL-D-GLUCOSAMINE (NAGh)
3i: N-ACETYL-D-GLUCOSAMINE (NAGi)
3j: N-ACETYL-D-GLUCOSAMINE (NAGj)
3k: N-ACETYL-D-GLUCOSAMINE (NAGk)
3l: N-ACETYL-D-GLUCOSAMINE (NAGl)
3m: N-ACETYL-D-GLUCOSAMINE (NAGm)
3n: N-ACETYL-D-GLUCOSAMINE (NAGn)
4a: SULFATE ION (SO4a)
4b: SULFATE ION (SO4b)
4c: SULFATE ION (SO4c)
4d: SULFATE ION (SO4d)
4e: SULFATE ION (SO4e)
4f: SULFATE ION (SO4f)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
2KV
2
Ligand/Ion
1-[CIS-4-(AMINOMETHYL)-4-(3-CHLOROPHENYL)CYCLOHEXYL]PIPERIDIN-2-ONE
2
MAN
3
Ligand/Ion
ALPHA-D-MANNOSE
3
NAG
14
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
4
SO4
6
Ligand/Ion
SULFATE ION
[
close Hetero Component info
]
Sites
(21, 21)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ARG A:596 , ARG A:597 , ASP A:678 , ASN A:679
BINDING SITE FOR RESIDUE SO4 A 812
02
AC2
SOFTWARE
GLU A:146 , ARG A:147 , HOH A:1481
BINDING SITE FOR RESIDUE SO4 A 813
03
AC3
SOFTWARE
ARG A:658 , ARG A:684 , SER B:245
BINDING SITE FOR RESIDUE SO4 A 814
04
AC4
SOFTWARE
ARG A:125 , GLU A:205 , GLU A:206 , SER A:209 , PHE A:357 , TYR A:547 , SER A:630 , TYR A:662 , TYR A:666 , HIS A:740 , HOH A:1041 , HOH A:1073
BINDING SITE FOR RESIDUE 2KV A 815
05
AC5
SOFTWARE
THR B:144 , GLU B:145 , GLU B:146 , ARG B:147
BINDING SITE FOR RESIDUE SO4 B 807
06
AC6
SOFTWARE
ARG B:596 , ARG B:597 , ASP B:678 , ASN B:679 , HOH B:1115
BINDING SITE FOR RESIDUE SO4 B 808
07
AC7
SOFTWARE
GLU A:244 , ARG B:658 , ARG B:684 , HOH B:1391
BINDING SITE FOR RESIDUE SO4 B 809
08
AC8
SOFTWARE
ARG B:125 , GLU B:205 , GLU B:206 , SER B:209 , SER B:630 , TYR B:631 , TYR B:662 , TYR B:666 , HIS B:740 , HOH B:1046
BINDING SITE FOR RESIDUE 2KV B 810
09
AC9
SOFTWARE
ASN A:85 , SER A:87 , ASN A:520 , GLU A:608 , ARG A:611 , NAG A:811 , HOH A:1075 , HOH A:1134 , HOH A:1192 , HOH A:1237 , HOH A:1242 , HOH A:1326 , LYS B:391
BINDING SITE FOR CHAIN A OF SUGAR BOUND TO ASN A 85 RESIDUES 801 TO 805
10
BC1
SOFTWARE
ARG A:147 , ILE A:148 , ASN A:150
BINDING SITE FOR MONO-SACCHARIDE NAG A 806 BOUND TO ASN A 150
11
BC2
SOFTWARE
ASN A:219 , THR A:221 , GLN A:308 , GLU A:309 , HOH A:1150 , HOH A:1449
BINDING SITE FOR MONO-SACCHARIDE NAG A 807 BOUND TO ASN A 219
12
BC3
SOFTWARE
ASN A:229 , THR A:231 , GLU A:232 , LYS A:267 , HOH A:1045
BINDING SITE FOR MONO-SACCHARIDE NAG A 808 BOUND TO ASN A 229
13
BC4
SOFTWARE
TRP A:187 , ASN A:281 , HOH A:1099
BINDING SITE FOR MONO-SACCHARIDE NAG A 809 BOUND TO ASN A 281
14
BC5
SOFTWARE
ILE A:319 , ASN A:321 , SER A:349 , THR A:350 , ARG A:596
BINDING SITE FOR MONO-SACCHARIDE NAG A 810 BOUND TO ASN A 321
15
BC6
SOFTWARE
ASN A:520 , ARG A:581 , MAN A:805 , HOH A:1040
BINDING SITE FOR MONO-SACCHARIDE NAG A 811 BOUND TO ASN A 520
16
BC7
SOFTWARE
ASN B:85 , SER B:86 , SER B:87 , HOH B:1093
BINDING SITE FOR MONO-SACCHARIDE NAG B 801 BOUND TO ASN B 85
17
BC8
SOFTWARE
ARG B:147 , ASN B:150 , HOH B:1102
BINDING SITE FOR MONO-SACCHARIDE NAG B 802 BOUND TO ASN B 150
18
BC9
SOFTWARE
ASN B:219 , THR B:221 , GLN B:308 , GLU B:309 , HOH B:1013
BINDING SITE FOR MONO-SACCHARIDE NAG B 803 BOUND TO ASN B 219
19
CC1
SOFTWARE
ILE B:194 , ASN B:229 , THR B:231 , LYS B:267 , HOH B:1084
BINDING SITE FOR MONO-SACCHARIDE NAG B 804 BOUND TO ASN B 229
20
CC2
SOFTWARE
TRP B:187 , VAL B:279 , ASN B:281 , HOH B:1199 , HOH B:1305 , HOH B:1342
BINDING SITE FOR MONO-SACCHARIDE NAG B 805 BOUND TO ASN B 281
21
CC3
SOFTWARE
ILE B:319 , ASN B:321 , SER B:349 , ARG B:596
BINDING SITE FOR MONO-SACCHARIDE NAG B 806 BOUND TO ASN B 321
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
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Sorry, no Info available
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
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End label:
Sorry, no Info available
[
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 4)
Info
All SCOP Domains
1a: SCOP_d4n8ea1 (A:40-508)
1b: SCOP_d4n8eb1 (B:39-508)
2a: SCOP_d4n8ea2 (A:509-766)
2b: SCOP_d4n8eb2 (B:509-772)
View:
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Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
8-bladed beta-propeller
(135)
Superfamily
:
DPP6 N-terminal domain-like
(99)
Family
:
DPP6 N-terminal domain-like
(99)
Protein domain
:
Dipeptidyl peptidase IV/CD26, N-terminal domain
(88)
Human (Homo sapiens) [TaxId: 9606]
(80)
1a
d4n8ea1
A:40-508
1b
d4n8eb1
B:39-508
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
alpha/beta-Hydrolases
(971)
Superfamily
:
alpha/beta-Hydrolases
(971)
Family
:
automated matches
(184)
Protein domain
:
automated matches
(184)
Human (Homo sapiens) [TaxId: 9606]
(42)
2a
d4n8ea2
A:509-766
2b
d4n8eb2
B:509-772
[
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]
CATH Domains
(0, 0)
Info
all CATH domains
View:
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Sorry, no Info available
[
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]
Pfam Domains
(0, 0)
Info
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Sorry, no Info available
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Asymmetric Unit 1
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select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
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Asym.Unit (532 KB)
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