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4N7K
Asym. Unit
Info
Asym.Unit (171 KB)
Biol.Unit 1 (158 KB)
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(1)
Title
:
ZINC SUBSTITUTED REACTION CENTER OF THE RHODOBACTER SPHAEROIDES
Authors
:
A. Hardjasa, M. E. P. Murphy
Date
:
15 Oct 13 (Deposition) - 05 Feb 14 (Release) - 05 Feb 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.85
Chains
:
Asym. Unit : H,L,M
Biol. Unit 1: H,L,M (1x)
Keywords
:
Zinc Bacteriochlorophyll, Photosynthesis
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
R. G. Saer, J. Pan, A. Hardjasa, S. Lin, F. Rosell, A. G. Mauk, N. W. Woodbury, M. E. Murphy, J. T. Beatty
Structural And Kinetic Properties Of Rhodobacter Sphaeroide Photosynthetic Reaction Centers Containing Exclusively Zn-Coordinated Bacteriochlorophyll As Bacteriochlorin Cofactors.
Biochim. Biophys. Acta V. 1837 366 2013
[
close entry info
]
Hetero Components
(11, 28)
Info
All Hetero Components
01a: [METHYL 9-ACETYL-14-ETHYL-20-HYDRO... (2GOa)
01b: [METHYL 9-ACETYL-14-ETHYL-20-HYDRO... (2GOb)
01c: [METHYL 9-ACETYL-14-ETHYL-20-HYDRO... (2GOc)
01d: [METHYL 9-ACETYL-14-ETHYL-20-HYDRO... (2GOd)
01e: [METHYL 9-ACETYL-14-ETHYL-20-HYDRO... (2GOe)
01f: [METHYL 9-ACETYL-14-ETHYL-20-HYDRO... (2GOf)
02a: CARDIOLIPIN (CDLa)
03a: FE (III) ION (FEa)
04a: NONADEC-10-ENOIC ACID 2-[3,4-DIHYD... (GGDa)
05a: GLYCEROL (GOLa)
05b: GLYCEROL (GOLb)
05c: GLYCEROL (GOLc)
05d: GLYCEROL (GOLd)
05e: GLYCEROL (GOLe)
05f: GLYCEROL (GOLf)
05g: GLYCEROL (GOLg)
06a: HEPTANE-1,2,3-TRIOL (HTOa)
06b: HEPTANE-1,2,3-TRIOL (HTOb)
07a: LAURYL DIMETHYLAMINE-N-OXIDE (LDAa)
07b: LAURYL DIMETHYLAMINE-N-OXIDE (LDAb)
07c: LAURYL DIMETHYLAMINE-N-OXIDE (LDAc)
07d: LAURYL DIMETHYLAMINE-N-OXIDE (LDAd)
07e: LAURYL DIMETHYLAMINE-N-OXIDE (LDAe)
08a: 1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHO... (PC1a)
09a: PHOSPHATE ION (PO4a)
10a: SPHEROIDENE (SPOa)
11a: UBIQUINONE-10 (U10a)
11b: UBIQUINONE-10 (U10b)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
2GO
6
Ligand/Ion
[METHYL 9-ACETYL-14-ETHYL-20-HYDROXY-4,8,13,18-TETRAMETHYL-3-{3-OXO-3-[(3,7,11,15-TETRAMETHYLHEXADEC-2-EN-1-YL)OXY]PROPYL}-3,4,20,21-TETRADEHYDROPHORBINE-21-CARBOXYLATATO(2-)-KAPPA~4~N~23~,N~24~,N~25~,N~26~]ZINC
2
CDL
1
Ligand/Ion
CARDIOLIPIN
3
FE
1
Ligand/Ion
FE (III) ION
4
GGD
1
Ligand/Ion
NONADEC-10-ENOIC ACID 2-[3,4-DIHYDROXY-6-HYDROXYMETHYL-5-(3,4,5-TRIHYDROXY-6-HYDROXYMETHYL-TETRAHYDRO-PYRAN-2-YLOXY)-TETRAHYDRO-PYRAN-2-YLOXY]-1-OCTADEC-9-ENOYLOXYMETHYL-ETHYL ESTER
5
GOL
7
Ligand/Ion
GLYCEROL
6
HTO
2
Ligand/Ion
HEPTANE-1,2,3-TRIOL
7
LDA
5
Ligand/Ion
LAURYL DIMETHYLAMINE-N-OXIDE
8
PC1
1
Ligand/Ion
1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE
9
PO4
1
Ligand/Ion
PHOSPHATE ION
10
SPO
1
Ligand/Ion
SPHEROIDENE
11
U10
2
Ligand/Ion
UBIQUINONE-10
[
close Hetero Component info
]
Sites
(28, 28)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLU H:34 , ARG H:37 , LYS H:62 , ASN L:199 , GOL L:311 , ARG M:267 , CDL M:409
BINDING SITE FOR RESIDUE GOL H 301
02
AC2
SOFTWARE
ALA H:25
BINDING SITE FOR RESIDUE GOL H 302
03
AC3
SOFTWARE
TRP H:21 , GOL H:304 , GGD H:305
BINDING SITE FOR RESIDUE GOL H 303
04
AC4
SOFTWARE
TRP H:21 , GOL H:303 , HOH H:501 , GOL L:313
BINDING SITE FOR RESIDUE GOL H 304
05
AC5
SOFTWARE
GLN H:32 , TYR H:40 , ASN H:52 , GLY H:54 , GOL H:303 , ALA L:1 , PRO L:28 , PHE L:29 , ARG M:253 , GLY M:257 , U10 M:407
BINDING SITE FOR RESIDUE GGD H 305
06
AC6
SOFTWARE
TYR L:128 , LEU L:131 , PHE L:146 , ILE L:150 , HIS L:153 , LEU L:154 , 2GO L:305 , 2GO L:307 , PHE M:197 , GLY M:203 , ILE M:206 , ALA M:207 , TYR M:210 , LEU M:214 , LDA M:403 , HOH M:513
BINDING SITE FOR RESIDUE 2GO L 301
07
AC7
SOFTWARE
TYR L:148
BINDING SITE FOR RESIDUE LDA L 302
08
AC8
SOFTWARE
2GO M:401
BINDING SITE FOR RESIDUE LDA L 303
09
AC9
SOFTWARE
SER L:178 , PHE L:179 , U10 L:306
BINDING SITE FOR RESIDUE LDA L 304
10
BC1
SOFTWARE
ALA L:93 , ALA L:96 , PHE L:97 , TRP L:100 , GLU L:104 , ILE L:117 , ALA L:120 , PHE L:121 , ALA L:124 , TYR L:148 , 2GO L:301 , 2GO L:307 , TYR M:210 , ALA M:213 , LEU M:214 , TRP M:252 , MET M:256
BINDING SITE FOR RESIDUE 2GO L 305
11
BC2
SOFTWARE
LEU L:189 , HIS L:190 , LEU L:193 , GLU L:212 , ASP L:213 , PHE L:216 , TYR L:222 , SER L:223 , ILE L:224 , GLY L:225 , THR L:226 , ILE L:229 , LEU L:232 , LDA L:304 , LEU M:47 , LDA M:404 , PC1 M:410
BINDING SITE FOR RESIDUE U10 L 306
12
BC3
SOFTWARE
PHE L:97 , ALA L:124 , ILE L:125 , ALA L:127 , TYR L:128 , LEU L:131 , VAL L:157 , TYR L:162 , ASN L:166 , HIS L:168 , HIS L:173 , ALA L:176 , ILE L:177 , SER L:244 , ALA L:245 , CYS L:247 , MET L:248 , 2GO L:301 , 2GO L:305 , TYR M:210 , 2GO M:402
BINDING SITE FOR RESIDUE 2GO L 307
13
BC4
SOFTWARE
HIS H:126 , HOH H:506 , TYR L:73 , LYS L:82 , THR M:21
BINDING SITE FOR RESIDUE PO4 L 308
14
BC5
SOFTWARE
GLN L:87 , ILE L:91 , TRP L:142
BINDING SITE FOR RESIDUE HTO L 309
15
BC6
SOFTWARE
ILE L:91
BINDING SITE FOR RESIDUE HTO L 310
16
BC7
SOFTWARE
THR H:63 , PHE H:64 , GOL H:301 , HOH H:419 , ALA L:198 , ASN L:199 , PRO L:200 , HOH L:476
BINDING SITE FOR RESIDUE GOL L 311
17
BC8
SOFTWARE
ALA L:78 , LEU L:80
BINDING SITE FOR RESIDUE GOL L 312
18
BC9
SOFTWARE
GOL H:304 , GLN L:62 , LDA M:403
BINDING SITE FOR RESIDUE GOL L 313
19
CC1
SOFTWARE
HIS L:168 , MET L:174 , ILE L:177 , SER L:178 , THR L:182 , LDA L:303 , LEU M:160 , ILE M:179 , HIS M:182 , LEU M:183 , THR M:186 , 2GO M:402 , 2GO M:406 , SPO M:408 , HOH M:510
BINDING SITE FOR RESIDUE 2GO M 401
20
CC2
SOFTWARE
TYR L:162 , PHE L:181 , 2GO L:307 , LEU M:156 , THR M:186 , ASN M:187 , PHE M:189 , SER M:190 , LEU M:196 , PHE M:197 , HIS M:202 , SER M:205 , ILE M:206 , TYR M:210 , GLY M:280 , ILE M:284 , 2GO M:401 , 2GO M:406 , PC1 M:410
BINDING SITE FOR RESIDUE 2GO M 402
21
CC3
SOFTWARE
TRP L:151 , 2GO L:301 , GOL L:313 , PRO M:200 , LEU M:204
BINDING SITE FOR RESIDUE LDA M 403
22
CC4
SOFTWARE
U10 L:306 , PHE M:7 , LEU M:38 , TRP M:41
BINDING SITE FOR RESIDUE LDA M 404
23
CC5
SOFTWARE
HIS L:190 , HIS L:230 , HIS M:219 , GLU M:234 , HIS M:266
BINDING SITE FOR RESIDUE FE M 405
24
CC6
SOFTWARE
PHE L:181 , LEU L:185 , LEU L:189 , GLY M:63 , PHE M:67 , ALA M:125 , VAL M:126 , TRP M:129 , ALA M:149 , PHE M:150 , ALA M:153 , ALA M:273 , THR M:277 , 2GO M:401 , 2GO M:402
BINDING SITE FOR RESIDUE 2GO M 406
25
CC7
SOFTWARE
GGD H:305 , PHE L:29 , TRP L:100 , MET M:218 , HIS M:219 , THR M:222 , ALA M:248 , ALA M:249 , TRP M:252 , MET M:256 , ASN M:259 , ALA M:260 , ILE M:265 , TRP M:268
BINDING SITE FOR RESIDUE U10 M 407
26
CC8
SOFTWARE
PHE M:67 , ILE M:70 , GLY M:71 , TRP M:75 , TRP M:115 , SER M:119 , PHE M:120 , TRP M:157 , GLY M:161 , TRP M:171 , GLY M:178 , ILE M:179 , HIS M:182 , 2GO M:401
BINDING SITE FOR RESIDUE SPO M 408
27
CC9
SOFTWARE
ALA H:16 , PHE H:20 , PHE H:23 , GLY H:26 , TYR H:30 , GOL H:301 , HOH H:401 , ASN L:199 , PRO L:200 , GLY M:143 , LYS M:144 , HIS M:145 , TRP M:148 , ARG M:267 , TRP M:271 , LEU M:278 , HOH M:584
BINDING SITE FOR RESIDUE CDL M 409
28
DC1
SOFTWARE
VAL L:220 , U10 L:306 , SER M:30 , GLY M:31 , VAL M:32 , GLY M:33 , LEU M:52 , 2GO M:402
BINDING SITE FOR RESIDUE PC1 M 410
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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Sorry, no Info available
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
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End label:
Sorry, no Info available
[
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]
Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(4, 4)
Info
All SCOP Domains
1a: SCOP_d4n7kh2 (H:36-251)
2a: SCOP_d4n7kl_ (L:)
3a: SCOP_d4n7km_ (M:)
4a: SCOP_d4n7kh1 (H:11-35)
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Classes
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Folds
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(
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(
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(
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
PRC-barrel domain
(113)
Superfamily
:
PRC-barrel domain
(113)
Family
:
Photosynthetic reaction centre, H-chain, cytoplasmic domain
(108)
Protein domain
:
automated matches
(10)
Rhodobacter sphaeroides [TaxId: 1063]
(6)
1a
d4n7kh2
H:36-251
Class
:
Membrane and cell surface proteins and peptides
(2046)
Fold
:
Bacterial photosystem II reaction centre, L and M subunits
(187)
Superfamily
:
Bacterial photosystem II reaction centre, L and M subunits
(187)
Family
:
Bacterial photosystem II reaction centre, L and M subunits
(187)
Protein domain
:
L (light) subunit
(70)
Rhodobacter sphaeroides [TaxId: 1063]
(59)
2a
d4n7kl_
L:
Protein domain
:
M (medium) subunit
(70)
Rhodobacter sphaeroides [TaxId: 1063]
(59)
3a
d4n7km_
M:
Fold
:
Single transmembrane helix
(568)
Superfamily
:
Photosystem II reaction centre subunit H, transmembrane region
(108)
Family
:
automated matches
(10)
Protein domain
:
automated matches
(10)
Rhodobacter sphaeroides [TaxId: 1063]
(6)
4a
d4n7kh1
H:11-35
[
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]
CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
(0, 0)
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Sorry, no Info available
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