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4N62
Asym. Unit
Info
Asym.Unit (345 KB)
Biol.Unit 1 (497 KB)
Biol.Unit 2 (498 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF HEMAGGLUTININ FROM AN H7N9 INFLUENZA VIRUS IN COMPLEX WITH A SULFATED RECEPTOR ANALOG
Authors
:
R. Xu, I. A. Wilson
Date
:
11 Oct 13 (Deposition) - 18 Dec 13 (Release) - 18 Dec 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.50
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B (3x)
Biol. Unit 2: C,D (3x)
Keywords
:
Viral Envelope Protein, Hemagglutinin, Viral Fusion Protein, Viral Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
R. Xu, R. P. De Vries, X. Zhu, C. M. Nycholat, R. Mcbride, W. Yu, J. C. Paulson, I. A. Wilson
Preferential Recognition Of Avian-Like Receptors In Human Influenza A H7N9 Viruses.
Science V. 342 1230 2013
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Hetero Components
(5, 11)
Info
All Hetero Components
1a: BETA-D-MANNOSE (BMAa)
2a: BETA-D-GALACTOSE (GALa)
2b: BETA-D-GALACTOSE (GALb)
3a: N-ACETYL-D-GLUCOSAMINE (NAGa)
3b: N-ACETYL-D-GLUCOSAMINE (NAGb)
3c: N-ACETYL-D-GLUCOSAMINE (NAGc)
3d: N-ACETYL-D-GLUCOSAMINE (NAGd)
4a: 2-(ACETYLAMINO)-2-DEOXY-6-O-SULFO-... (NGSa)
4b: 2-(ACETYLAMINO)-2-DEOXY-6-O-SULFO-... (NGSb)
5a: O-SIALIC ACID (SIAa)
5b: O-SIALIC ACID (SIAb)
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Label:
No.
Name
Count
Type
Full Name
1
BMA
1
Ligand/Ion
BETA-D-MANNOSE
2
GAL
2
Ligand/Ion
BETA-D-GALACTOSE
3
NAG
4
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
4
NGS
2
Ligand/Ion
2-(ACETYLAMINO)-2-DEOXY-6-O-SULFO-BETA-D-GLUCOPYRANOSE
5
SIA
2
Ligand/Ion
O-SIALIC ACID
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Sites
(11, 11)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
View:
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASN A:38 , THR A:318 , NAG A:402 , LEU B:52
BINDING SITE FOR RESIDUE NAG A 401
02
AC2
SOFTWARE
THR A:40 , NAG A:401 , BMA A:403
BINDING SITE FOR RESIDUE NAG A 402
03
AC3
SOFTWARE
NAG A:402
BINDING SITE FOR RESIDUE BMA A 403
04
AC4
SOFTWARE
LYS A:169 , ASN A:240
BINDING SITE FOR RESIDUE NAG A 404
05
AC5
SOFTWARE
TYR A:98 , GLY A:134 , ALA A:135 , THR A:136 , SER A:137 , HIS A:183 , GLU A:190 , LEU A:194 , GAL A:406
BINDING SITE FOR RESIDUE SIA A 405
06
AC6
SOFTWARE
SIA A:405 , NGS A:407
BINDING SITE FOR RESIDUE GAL A 406
07
AC7
SOFTWARE
VAL A:186 , GLU A:190 , GLN A:222 , GLY A:225 , LEU A:226 , SER A:227 , GAL A:406
BINDING SITE FOR RESIDUE NGS A 407
08
AC8
SOFTWARE
GLU B:72 , LYS B:75 , GLY B:78 , ASN B:79 , ASN B:82 , HOH B:322
BINDING SITE FOR RESIDUE NAG B 201
09
AC9
SOFTWARE
TYR C:98 , ALA C:135 , THR C:136 , SER C:137 , LEU C:155 , HIS C:183 , GLU C:190 , LEU C:194 , GAL C:402
BINDING SITE FOR RESIDUE SIA C 401
10
BC1
SOFTWARE
SIA C:401 , NGS C:403
BINDING SITE FOR RESIDUE GAL C 402
11
BC2
SOFTWARE
VAL C:186 , GLU C:190 , GLN C:222 , GLY C:225 , LEU C:226 , SER C:227 , GAL C:402
BINDING SITE FOR RESIDUE NGS C 403
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 4)
Info
All SCOP Domains
1a: SCOP_d4n62a_ (A:)
1b: SCOP_d4n62c_ (C:)
2a: SCOP_d4n62b_ (B:)
2b: SCOP_d4n62d_ (D:)
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Protein Domains
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Organisms
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Class
:
All beta proteins
(24004)
Fold
:
Viral protein domain
(195)
Superfamily
:
Viral protein domain
(195)
Family
:
automated matches
(37)
Protein domain
:
automated matches
(37)
Influenza a virus [TaxId: 1332244]
(9)
1a
d4n62a_
A:
1b
d4n62c_
C:
Class
:
Coiled coil proteins
(689)
Fold
:
Stalk segment of viral fusion proteins
(231)
Superfamily
:
Influenza hemagglutinin (stalk)
(172)
Family
:
Influenza hemagglutinin (stalk)
(161)
Protein domain
:
automated matches
(59)
Influenza a virus [TaxId: 1332244]
(9)
2a
d4n62b_
B:
2b
d4n62d_
D:
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CATH Domains
(0, 0)
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Pfam Domains
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Asymmetric Unit 1
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Show PDB file:
Asym.Unit (345 KB)
Header - Asym.Unit
Biol.Unit 1 (497 KB)
Header - Biol.Unit 1
Biol.Unit 2 (498 KB)
Header - Biol.Unit 2
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