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4N58
Asym. Unit
Info
Asym.Unit (204 KB)
Biol.Unit 1 (99 KB)
Biol.Unit 2 (100 KB)
Biol.Unit 3 (194 KB)
Biol.Unit 4 (194 KB)
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Title
:
CRYSTAL STRUCTURE OF PECTOCIN M2 AT 1.86 ANGSTROMS
Authors
:
R. Grinter, A. W. Roszak, K. Zeth, C. J. Cogdell, D. Walker
Date
:
09 Oct 13 (Deposition) - 04 Jun 14 (Release) - 13 Aug 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.86
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: A (2x)
Biol. Unit 4: B (2x)
Keywords
:
Plant-Like Ferredoxin, Colicin M-Like Cytotoxic Domain, Lipid-Ii Hydrolase, Bacteriocin, Protein Antibiotc, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
R. Grinter, I. Josts, K. Zeth, A. W. Roszak, L. C. Mccaughey, R. J. Cogdell, J. J. Milner, S. M. Kelly, O. Byron, D. Walker
Structure Of The Atypical Bacteriocin Pectocin M2 Implies A Novel Mechanism Of Protein Uptake.
Mol. Microbiol. V. 93 234 2014
[
close entry info
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Hetero Components
(5, 66)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
2a: FE2/S2 (INORGANIC) CLUSTER (FESa)
2b: FE2/S2 (INORGANIC) CLUSTER (FESb)
3a: GLYCEROL (GOLa)
3aa: GLYCEROL (GOLaa)
3ab: GLYCEROL (GOLab)
3ac: GLYCEROL (GOLac)
3ad: GLYCEROL (GOLad)
3ae: GLYCEROL (GOLae)
3af: GLYCEROL (GOLaf)
3ag: GLYCEROL (GOLag)
3ah: GLYCEROL (GOLah)
3ai: GLYCEROL (GOLai)
3b: GLYCEROL (GOLb)
3c: GLYCEROL (GOLc)
3d: GLYCEROL (GOLd)
3e: GLYCEROL (GOLe)
3f: GLYCEROL (GOLf)
3g: GLYCEROL (GOLg)
3h: GLYCEROL (GOLh)
3i: GLYCEROL (GOLi)
3j: GLYCEROL (GOLj)
3k: GLYCEROL (GOLk)
3l: GLYCEROL (GOLl)
3m: GLYCEROL (GOLm)
3n: GLYCEROL (GOLn)
3o: GLYCEROL (GOLo)
3p: GLYCEROL (GOLp)
3q: GLYCEROL (GOLq)
3r: GLYCEROL (GOLr)
3s: GLYCEROL (GOLs)
3t: GLYCEROL (GOLt)
3u: GLYCEROL (GOLu)
3v: GLYCEROL (GOLv)
3w: GLYCEROL (GOLw)
3x: GLYCEROL (GOLx)
3y: GLYCEROL (GOLy)
3z: GLYCEROL (GOLz)
4a: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDa)
4b: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDb)
4c: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDc)
4d: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDd)
4e: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDe)
4f: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDf)
4g: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDg)
4h: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDh)
4i: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDi)
4j: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDj)
5a: SULFATE ION (SO4a)
5b: SULFATE ION (SO4b)
5c: SULFATE ION (SO4c)
5d: SULFATE ION (SO4d)
5e: SULFATE ION (SO4e)
5f: SULFATE ION (SO4f)
5g: SULFATE ION (SO4g)
5h: SULFATE ION (SO4h)
5i: SULFATE ION (SO4i)
5j: SULFATE ION (SO4j)
5k: SULFATE ION (SO4k)
5l: SULFATE ION (SO4l)
5m: SULFATE ION (SO4m)
5n: SULFATE ION (SO4n)
5o: SULFATE ION (SO4o)
5p: SULFATE ION (SO4p)
5q: SULFATE ION (SO4q)
5r: SULFATE ION (SO4r)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CL
1
Ligand/Ion
CHLORIDE ION
2
FES
2
Ligand/Ion
FE2/S2 (INORGANIC) CLUSTER
3
GOL
35
Ligand/Ion
GLYCEROL
4
MPD
10
Ligand/Ion
(4S)-2-METHYL-2,4-PENTANEDIOL
5
SO4
18
Ligand/Ion
SULFATE ION
[
close Hetero Component info
]
Sites
(66, 66)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
30: DC3 (SOFTWARE)
31: DC4 (SOFTWARE)
32: DC5 (SOFTWARE)
33: DC6 (SOFTWARE)
34: DC7 (SOFTWARE)
35: DC8 (SOFTWARE)
36: DC9 (SOFTWARE)
37: EC1 (SOFTWARE)
38: EC2 (SOFTWARE)
39: EC3 (SOFTWARE)
40: EC4 (SOFTWARE)
41: EC5 (SOFTWARE)
42: EC6 (SOFTWARE)
43: EC7 (SOFTWARE)
44: EC8 (SOFTWARE)
45: EC9 (SOFTWARE)
46: FC1 (SOFTWARE)
47: FC2 (SOFTWARE)
48: FC3 (SOFTWARE)
49: FC4 (SOFTWARE)
50: FC5 (SOFTWARE)
51: FC6 (SOFTWARE)
52: FC7 (SOFTWARE)
53: FC8 (SOFTWARE)
54: FC9 (SOFTWARE)
55: GC1 (SOFTWARE)
56: GC2 (SOFTWARE)
57: GC3 (SOFTWARE)
58: GC4 (SOFTWARE)
59: GC5 (SOFTWARE)
60: GC6 (SOFTWARE)
61: GC7 (SOFTWARE)
62: GC8 (SOFTWARE)
63: GC9 (SOFTWARE)
64: HC1 (SOFTWARE)
65: HC2 (SOFTWARE)
66: HC3 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
SER A:37 , CYS A:38 , ARG A:39 , GLY A:41 , ALA A:42 , CYS A:43 , CYS A:46 , CYS A:75
BINDING SITE FOR RESIDUE FES A 301
02
AC2
SOFTWARE
SER A:64 , GLU A:65 , HOH A:497
BINDING SITE FOR RESIDUE SO4 A 302
03
AC3
SOFTWARE
GLY A:189 , TYR A:190 , ASN A:248 , ASN A:249 , GOL A:322 , MPD A:330 , HOH A:471
BINDING SITE FOR RESIDUE SO4 A 303
04
AC4
SOFTWARE
ARG A:258 , HOH A:426
BINDING SITE FOR RESIDUE SO4 A 304
05
AC5
SOFTWARE
SER A:179 , ASP A:180 , GOL A:318 , HOH A:528 , HOH A:617 , ASN B:268
BINDING SITE FOR RESIDUE SO4 A 305
06
AC6
SOFTWARE
ARG A:39 , SO4 B:307 , HOH B:576
BINDING SITE FOR RESIDUE SO4 A 306
07
AC7
SOFTWARE
PHE A:153 , ASN A:154 , ILE A:155 , LYS A:264
BINDING SITE FOR RESIDUE SO4 A 307
08
AC8
SOFTWARE
ASN A:147 , ASN A:149 , GLY A:261 , GLU A:262 , HOH A:427
BINDING SITE FOR RESIDUE SO4 A 308
09
AC9
SOFTWARE
HOH A:630
BINDING SITE FOR RESIDUE SO4 A 309
10
BC1
SOFTWARE
THR A:227 , TYR A:228 , ASP A:229 , HOH A:445 , HOH A:587 , HOH A:626
BINDING SITE FOR RESIDUE GOL A 310
11
BC2
SOFTWARE
TYR A:4 , SER A:81 , ASP A:82 , HOH A:562 , HOH A:563
BINDING SITE FOR RESIDUE GOL A 311
12
BC3
SOFTWARE
THR A:10 , LEU A:34 , PRO A:35 , THR A:87 , GLY A:88 , LYS A:210 , SER A:211 , MPD A:325 , MPD A:327
BINDING SITE FOR RESIDUE GOL A 312
13
BC4
SOFTWARE
TYR A:36 , SER A:45 , GLU A:90 , GLY A:173 , ARG A:174 , GOL A:314 , MPD A:327 , HOH A:499 , HOH A:549 , HOH A:628
BINDING SITE FOR RESIDUE GOL A 313
14
BC5
SOFTWARE
LEU A:34 , PRO A:35 , TYR A:36 , LYS A:170 , ASN A:171 , VAL A:172 , GOL A:313 , GOL B:326
BINDING SITE FOR RESIDUE GOL A 314
15
BC6
SOFTWARE
TYR A:136 , ASP A:229 , ASN A:231 , GLY A:252 , PRO A:254 , HOH A:575
BINDING SITE FOR RESIDUE GOL A 315
16
BC7
SOFTWARE
LEU A:247 , ASN A:248 , LEU A:250 , SER A:251 , HOH A:623
BINDING SITE FOR RESIDUE GOL A 316
17
BC8
SOFTWARE
ASN A:198 , ILE A:199 , THR A:200 , ASP A:226 , HOH A:442 , HOH A:619
BINDING SITE FOR RESIDUE GOL A 317
18
BC9
SOFTWARE
ASP A:180 , SO4 A:305
BINDING SITE FOR RESIDUE GOL A 318
19
CC1
SOFTWARE
ARG A:222 , SER A:223 , TYR A:224 , GOL A:320 , GOL A:324 , HOH A:616
BINDING SITE FOR RESIDUE GOL A 319
20
CC2
SOFTWARE
TYR A:224 , ASN A:225 , GOL A:319 , GOL A:323 , HOH A:439
BINDING SITE FOR RESIDUE GOL A 320
21
CC3
SOFTWARE
HOH A:594 , HOH A:597 , LYS B:21 , LYS B:29
BINDING SITE FOR RESIDUE GOL A 321
22
CC4
SOFTWARE
PHE A:97 , GLU A:98 , GLY A:189 , TYR A:190 , SER A:191 , SO4 A:303
BINDING SITE FOR RESIDUE GOL A 322
23
CC5
SOFTWARE
GOL A:320 , HOH A:439 , HOH A:470
BINDING SITE FOR RESIDUE GOL A 323
24
CC6
SOFTWARE
GOL A:319
BINDING SITE FOR RESIDUE GOL A 324
25
CC7
SOFTWARE
THR A:10 , THR A:11 , LYS A:210 , SER A:211 , ASP A:212 , GOL A:312
BINDING SITE FOR RESIDUE MPD A 325
26
CC8
SOFTWARE
HOH A:425
BINDING SITE FOR RESIDUE MPD A 326
27
CC9
SOFTWARE
GLY A:88 , ASP A:91 , GOL A:312 , GOL A:313 , HOH A:461 , HOH A:610 , HOH A:628
BINDING SITE FOR RESIDUE MPD A 327
28
DC1
SOFTWARE
TRP A:215 , LYS A:270 , LYS A:271 , HOH A:510 , ASP B:176 , HOH B:501
BINDING SITE FOR RESIDUE MPD A 328
29
DC2
SOFTWARE
ASN A:33 , VAL A:172 , LYS A:210 , SER A:211 , GLY A:213 , LYS A:271
BINDING SITE FOR RESIDUE MPD A 329
30
DC3
SOFTWARE
ALA A:186 , SO4 A:303 , TYR B:36 , ARG B:39
BINDING SITE FOR RESIDUE MPD A 330
31
DC4
SOFTWARE
GLY A:169 , LYS A:170
BINDING SITE FOR RESIDUE CL A 331
32
DC5
SOFTWARE
SER B:37 , CYS B:38 , ARG B:39 , GLY B:41 , ALA B:42 , CYS B:43 , CYS B:46 , CYS B:75
BINDING SITE FOR RESIDUE FES B 301
33
DC6
SOFTWARE
ASN A:268 , SER B:179 , ASP B:180 , SO4 B:308 , HOH B:506 , HOH B:507
BINDING SITE FOR RESIDUE SO4 B 302
34
DC7
SOFTWARE
ARG B:258 , HOH B:431 , HOH B:432
BINDING SITE FOR RESIDUE SO4 B 303
35
DC8
SOFTWARE
PHE B:153 , ASN B:154 , ILE B:155
BINDING SITE FOR RESIDUE SO4 B 304
36
DC9
SOFTWARE
ASN B:147 , ASN B:149 , GLY B:261 , GLU B:262 , GOL B:325 , HOH B:515
BINDING SITE FOR RESIDUE SO4 B 305
37
EC1
SOFTWARE
PHE B:130 , HOH B:451
BINDING SITE FOR RESIDUE SO4 B 306
38
EC2
SOFTWARE
SO4 A:306 , GLY B:189 , TYR B:190 , ASN B:248 , ASN B:249 , GOL B:327 , HOH B:477 , HOH B:576
BINDING SITE FOR RESIDUE SO4 B 307
39
EC3
SOFTWARE
SO4 B:302
BINDING SITE FOR RESIDUE SO4 B 308
40
EC4
SOFTWARE
SER B:61 , PHE B:62 , LEU B:63 , SER B:64 , GOL B:321 , GOL B:324 , HOH B:599
BINDING SITE FOR RESIDUE SO4 B 309
41
EC5
SOFTWARE
GLY B:120 , GLU B:143 , SER B:145 , ARG B:258
BINDING SITE FOR RESIDUE SO4 B 310
42
EC6
SOFTWARE
GLN B:216 , LYS B:266 , HOH B:607
BINDING SITE FOR RESIDUE SO4 B 311
43
EC7
SOFTWARE
HOH B:429
BINDING SITE FOR RESIDUE GOL B 312
44
EC8
SOFTWARE
THR B:227 , TYR B:228 , ASP B:229 , ARG B:236 , HOH B:450 , HOH B:454
BINDING SITE FOR RESIDUE GOL B 313
45
EC9
SOFTWARE
LEU B:34 , PRO B:35 , TYR B:36 , LYS B:170 , ASN B:171 , VAL B:172 , GOL B:323
BINDING SITE FOR RESIDUE GOL B 314
46
FC1
SOFTWARE
THR B:87 , GLY B:88 , LYS B:92 , GOL B:316
BINDING SITE FOR RESIDUE GOL B 315
47
FC2
SOFTWARE
LYS B:92 , GOL B:315
BINDING SITE FOR RESIDUE GOL B 316
48
FC3
SOFTWARE
LYS B:92 , LEU B:94 , ASN B:249 , LEU B:250 , SER B:251 , GOL B:318
BINDING SITE FOR RESIDUE GOL B 317
49
FC4
SOFTWARE
LEU B:247 , ASN B:248 , LEU B:250 , GOL B:317 , HOH B:503
BINDING SITE FOR RESIDUE GOL B 318
50
FC5
SOFTWARE
GLY B:53 , GLU B:54 , VAL B:55 , GLU B:68 , LYS B:69 , GOL B:320 , HOH B:597 , HOH B:598
BINDING SITE FOR RESIDUE GOL B 319
51
FC6
SOFTWARE
SER B:52 , GLY B:53 , GOL B:319 , HOH B:562
BINDING SITE FOR RESIDUE GOL B 320
52
FC7
SOFTWARE
GLU B:65 , SO4 B:309 , HOH B:497
BINDING SITE FOR RESIDUE GOL B 321
53
FC8
SOFTWARE
SER B:45 , GLU B:90 , ASP B:91 , GOL B:323
BINDING SITE FOR RESIDUE GOL B 322
54
FC9
SOFTWARE
TYR B:36 , SER B:45 , GLU B:90 , GLY B:173 , ARG B:174 , GOL B:314 , GOL B:322
BINDING SITE FOR RESIDUE GOL B 323
55
GC1
SOFTWARE
SER B:64 , GLU B:95 , ASP B:96 , SO4 B:309 , HOH B:545
BINDING SITE FOR RESIDUE GOL B 324
56
GC2
SOFTWARE
ASN B:147 , ASP B:150 , SO4 B:305
BINDING SITE FOR RESIDUE GOL B 325
57
GC3
SOFTWARE
GOL A:314 , ASN B:156 , SER B:158 , MPD B:332 , HOH B:606
BINDING SITE FOR RESIDUE GOL B 326
58
GC4
SOFTWARE
ASP B:188 , GLY B:189 , TYR B:190 , SER B:191 , VAL B:192 , SO4 B:307 , HOH B:577
BINDING SITE FOR RESIDUE GOL B 327
59
GC5
SOFTWARE
ASN B:198 , ILE B:199 , THR B:200 , ASP B:226 , HOH B:447 , HOH B:473
BINDING SITE FOR RESIDUE GOL B 328
60
GC6
SOFTWARE
VAL B:206 , ASN B:208 , GLN B:216 , GLU B:218 , HOH B:527
BINDING SITE FOR RESIDUE GOL B 329
61
GC7
SOFTWARE
TYR B:224 , ASN B:225 , GOL B:331 , MPD B:333
BINDING SITE FOR RESIDUE GOL B 330
62
GC8
SOFTWARE
ARG B:222 , SER B:223 , TYR B:224 , GOL B:330 , HOH B:468 , HOH B:516
BINDING SITE FOR RESIDUE GOL B 331
63
GC9
SOFTWARE
ASP A:176 , MET B:164 , GOL B:326 , HOH B:502 , HOH B:593
BINDING SITE FOR RESIDUE MPD B 332
64
HC1
SOFTWARE
ASP B:180 , THR B:200 , GOL B:330
BINDING SITE FOR RESIDUE MPD B 333
65
HC2
SOFTWARE
LYS B:70 , ALA B:102 , ARG B:118 , HOH B:445 , HOH B:521
BINDING SITE FOR RESIDUE MPD B 334
66
HC3
SOFTWARE
THR B:10 , THR B:11 , LYS B:210 , SER B:211 , ASP B:212 , HOH B:519 , HOH B:549 , HOH B:568
BINDING SITE FOR RESIDUE MPD B 335
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
Info
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End label:
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Exons
(0, 0)
Info
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SCOP Domains
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CATH Domains
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Pfam Domains
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