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4N4O
Asym. Unit
Info
Asym.Unit (323 KB)
Biol.Unit 1 (306 KB)
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(1)
Title
:
NITROSOMONAS EUROPEA HAO SOAKED IN NH2OH
Authors
:
W. J. Maalcke, A. Dietl, S. J. Marritt, J. N. Butt, M. S. M. Jetten, J. T. Ke T. R. M. B. Barends, B. Kartal
Date
:
08 Oct 13 (Deposition) - 11 Dec 13 (Release) - 05 Feb 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.47
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,B,C,D,E,F (1x)
Keywords
:
C-Type Cytochrome, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
W. J. Maalcke, A. Dietl, S. J. Marritt, J. N. Butt, M. S. Jetten, J. T. Keltjens, T. R. Barends, B. Kartal
Structural Basis Of Biological No Generation By Octaheme Oxidoreductases.
J. Biol. Chem. V. 289 1228 2014
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close entry info
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Hetero Components
(6, 31)
Info
All Hetero Components
1a: DODECAETHYLENE GLYCOL (12Pa)
1b: DODECAETHYLENE GLYCOL (12Pb)
2a: HEME C (HECa)
2b: HEME C (HECb)
2c: HEME C (HECc)
3a: PROTOPORPHYRIN IX CONTAINING FE (HEMa)
3b: PROTOPORPHYRIN IX CONTAINING FE (HEMb)
3c: PROTOPORPHYRIN IX CONTAINING FE (HEMc)
3d: PROTOPORPHYRIN IX CONTAINING FE (HEMd)
3e: PROTOPORPHYRIN IX CONTAINING FE (HEMe)
3f: PROTOPORPHYRIN IX CONTAINING FE (HEMf)
3g: PROTOPORPHYRIN IX CONTAINING FE (HEMg)
3h: PROTOPORPHYRIN IX CONTAINING FE (HEMh)
3i: PROTOPORPHYRIN IX CONTAINING FE (HEMi)
3j: PROTOPORPHYRIN IX CONTAINING FE (HEMj)
3k: PROTOPORPHYRIN IX CONTAINING FE (HEMk)
3l: PROTOPORPHYRIN IX CONTAINING FE (HEMl)
3m: PROTOPORPHYRIN IX CONTAINING FE (HEMm)
3n: PROTOPORPHYRIN IX CONTAINING FE (HEMn)
3o: PROTOPORPHYRIN IX CONTAINING FE (HEMo)
3p: PROTOPORPHYRIN IX CONTAINING FE (HEMp)
3q: PROTOPORPHYRIN IX CONTAINING FE (HEMq)
3r: PROTOPORPHYRIN IX CONTAINING FE (HEMr)
3s: PROTOPORPHYRIN IX CONTAINING FE (HEMs)
3t: PROTOPORPHYRIN IX CONTAINING FE (HEMt)
3u: PROTOPORPHYRIN IX CONTAINING FE (HEMu)
4a: HYDROXYAMINE (HOAa)
4b: HYDROXYAMINE (HOAb)
4c: HYDROXYAMINE (HOAc)
5a: POTASSIUM ION (Ka)
6a: PHOSPHATE ION (PO4a)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
12P
2
Ligand/Ion
DODECAETHYLENE GLYCOL
2
HEC
3
Ligand/Ion
HEME C
3
HEM
21
Ligand/Ion
PROTOPORPHYRIN IX CONTAINING FE
4
HOA
3
Ligand/Ion
HYDROXYAMINE
5
K
1
Ligand/Ion
POTASSIUM ION
6
PO4
1
Ligand/Ion
PHOSPHATE ION
[
close Hetero Component info
]
Sites
(31, 31)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
30: DC3 (SOFTWARE)
31: DC4 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
TYR A:140 , LYS A:141 , HIS A:200 , GLU A:203 , HIS A:228 , ASN A:259 , CYS A:263 , CYS A:266 , HIS A:267 , SER A:277 , ARG A:278 , ARG A:319 , LEU A:320 , ALA A:335 , MET A:339 , HIS A:347 , HEM A:602 , HEM A:606 , HOH A:757 , HOH A:771
BINDING SITE FOR RESIDUE HEM A 601
02
AC2
SOFTWARE
THR A:122 , HIS A:123 , LYS A:141 , LYS A:144 , LEU A:145 , LEU A:164 , VAL A:167 , THR A:195 , CYS A:196 , CYS A:199 , HIS A:200 , CYS A:263 , PHE A:272 , ALA A:274 , HEM A:601 , HEM A:604 , HOH A:809
BINDING SITE FOR RESIDUE HEM A 602
03
AC3
SOFTWARE
TYR A:81 , TYR A:88 , ASP A:102 , CYS A:103 , CYS A:106 , HIS A:107 , GLU A:110 , CYS A:169 , HIS A:173 , HIS A:184 , ILE A:188 , MET A:190 , HEM A:604 , HOH A:819 , SER C:389 , GLU C:390 , ARG C:391
BINDING SITE FOR RESIDUE HEM A 603
04
AC4
SOFTWARE
TYR A:81 , PRO A:84 , HIS A:107 , TRP A:114 , TRP A:118 , HIS A:123 , VAL A:167 , GLY A:168 , CYS A:169 , CYS A:172 , HIS A:173 , MET A:190 , PRO A:191 , LYS A:262 , ASP A:264 , ARG A:269 , HIS A:270 , PHE A:272 , HEM A:602 , HEM A:603 , HIS C:388 , SER C:389
BINDING SITE FOR RESIDUE HEM A 604
05
AC5
SOFTWARE
HIS A:287 , ASN A:294 , TYR A:298 , PRO A:332 , THR A:333 , CYS A:334 , CYS A:337 , HIS A:338 , THR A:353 , ARG A:354 , TRP A:355 , ALA A:356 , TRP A:380 , MET A:400 , HIS A:483 , HEM A:606 , HEM A:607 , HOH A:710 , HEC C:601
BINDING SITE FOR RESIDUE HEM A 605
06
AC6
SOFTWARE
PRO A:226 , SER A:227 , HIS A:228 , ASP A:231 , ALA A:234 , CYS A:256 , HIS A:257 , ASN A:259 , ASN A:265 , CYS A:266 , ALA A:282 , CYS A:283 , CYS A:286 , HIS A:287 , CYS A:334 , HIS A:338 , ILE A:349 , THR A:353 , ALA A:356 , HEM A:601 , HEM A:605 , HOH A:743 , HEC C:601
BINDING SITE FOR RESIDUE HEM A 606
07
AC7
SOFTWARE
HIS A:303 , PHE A:324 , ASN A:330 , ALA A:331 , PRO A:332 , THR A:383 , CYS A:384 , CYS A:387 , HIS A:388 , PHE A:392 , TYR A:396 , VAL A:484 , HEM A:605 , HOH A:720 , HOH A:865 , TRP E:114 , LYS E:262 , ASP E:264 , THR E:268 , ARG E:269 , HOH E:711
BINDING SITE FOR RESIDUE HEM A 607
08
AC8
SOFTWARE
GLY A:487 , THR A:490 , TYR A:491 , HOH A:717 , HOH A:774 , TRP E:221 , ARG E:225 , ALA E:234 , ASN E:235 , THR E:238 , GLY E:252 , CYS E:253 , CYS E:256 , HIS E:257 , CYS E:286 , HIS E:287 , HIS E:292 , ASN E:357 , PHE E:452 , HEM E:606 , HEM E:607 , HOA E:610 , HOH E:773
BINDING SITE FOR RESIDUE HEC A 608
09
AC9
SOFTWARE
ASP A:312 , HOH A:872 , ASP C:312 , ASP E:312
BINDING SITE FOR RESIDUE K A 609
10
BC1
SOFTWARE
ASP A:291 , HIS A:292 , TYR C:491 , HEC C:601
BINDING SITE FOR RESIDUE HOA A 610
11
BC2
SOFTWARE
PHE A:360 , PHE A:448 , GLU A:471 , HEC C:601
BINDING SITE FOR RESIDUE 12P A 611
12
BC3
SOFTWARE
TRP A:221 , ARG A:225 , ALA A:234 , ASN A:235 , THR A:238 , TRP A:241 , GLY A:252 , CYS A:253 , CYS A:256 , HIS A:257 , THR A:285 , CYS A:286 , HIS A:287 , HIS A:292 , ASN A:357 , PHE A:452 , HEM A:605 , HEM A:606 , HOA A:610 , 12P A:611 , HOH A:702 , HOH A:765 , THR C:490 , TYR C:491 , HOH C:823
BINDING SITE FOR RESIDUE HEC C 601
13
BC4
SOFTWARE
TYR C:140 , LYS C:141 , CYS C:196 , HIS C:200 , GLU C:203 , HIS C:228 , ASN C:259 , CYS C:263 , CYS C:266 , HIS C:267 , SER C:277 , ARG C:278 , ARG C:319 , LEU C:320 , ALA C:335 , MET C:339 , HIS C:347 , HEM C:603 , HEM C:607 , HOH C:843
BINDING SITE FOR RESIDUE HEM C 602
14
BC5
SOFTWARE
THR C:122 , HIS C:123 , LYS C:141 , LYS C:144 , LEU C:145 , LEU C:164 , VAL C:167 , VAL C:176 , CYS C:196 , CYS C:199 , HIS C:200 , CYS C:263 , HIS C:267 , PHE C:272 , SER C:273 , ALA C:274 , HEM C:602 , HEM C:605 , HOH C:783 , HOH C:802
BINDING SITE FOR RESIDUE HEM C 603
15
BC6
SOFTWARE
LYS A:161 , TYR C:81 , TYR C:88 , PRO C:91 , GLU C:96 , ALA C:98 , CYS C:103 , CYS C:106 , HIS C:107 , GLU C:110 , HIS C:173 , HIS C:184 , ILE C:188 , MET C:190 , HEM C:605 , SER E:389 , GLU E:390 , ARG E:391
BINDING SITE FOR RESIDUE HEM C 604
16
BC7
SOFTWARE
TYR C:81 , PRO C:84 , HIS C:107 , TRP C:114 , TRP C:118 , VAL C:167 , GLY C:168 , CYS C:169 , CYS C:172 , HIS C:173 , MET C:190 , PRO C:191 , LYS C:262 , ASP C:264 , ARG C:269 , HIS C:270 , PHE C:272 , HEM C:603 , HEM C:604 , HIS E:388 , SER E:389 , HOH E:752
BINDING SITE FOR RESIDUE HEM C 605
17
BC8
SOFTWARE
HIS C:287 , ASN C:294 , TYR C:298 , PRO C:332 , THR C:333 , CYS C:334 , CYS C:337 , HIS C:338 , THR C:353 , ARG C:354 , TRP C:355 , ALA C:356 , TRP C:380 , MET C:400 , ALA C:482 , HIS C:483 , HEM C:607 , HEM C:608 , HOH C:701 , HOH C:815 , HEC E:601
BINDING SITE FOR RESIDUE HEM C 606
18
BC9
SOFTWARE
PRO C:226 , SER C:227 , HIS C:228 , ASP C:231 , ALA C:234 , CYS C:256 , HIS C:257 , ASN C:259 , ASN C:265 , CYS C:266 , ALA C:282 , CYS C:283 , CYS C:286 , HIS C:287 , CYS C:334 , ILE C:349 , THR C:353 , ALA C:356 , HEM C:602 , HEM C:606 , HOH C:826 , HEC E:601
BINDING SITE FOR RESIDUE HEM C 607
19
CC1
SOFTWARE
TRP A:114 , LYS A:262 , ASP A:264 , THR A:268 , ARG A:269 , HOH A:793 , HIS C:303 , PHE C:324 , ASN C:330 , ALA C:331 , PRO C:332 , THR C:383 , CYS C:384 , CYS C:387 , HIS C:388 , PHE C:392 , TYR C:396 , VAL C:484 , HEM C:606 , HOH C:754 , HOH C:767 , HOH C:794
BINDING SITE FOR RESIDUE HEM C 608
20
CC2
SOFTWARE
ASP C:291 , HIS C:292 , TYR E:491 , HEC E:601
BINDING SITE FOR RESIDUE HOA C 609
21
CC3
SOFTWARE
GLN C:220 , PHE C:360 , TYR C:411 , GLY C:446 , PHE C:448 , GLU C:471 , HOH C:949 , HEC E:601
BINDING SITE FOR RESIDUE 12P C 610
22
CC4
SOFTWARE
TRP C:221 , ARG C:225 , ASN C:235 , THR C:238 , GLY C:252 , CYS C:253 , CYS C:256 , HIS C:257 , THR C:285 , CYS C:286 , HIS C:287 , HIS C:292 , ASN C:357 , PHE C:452 , HEM C:606 , HEM C:607 , HOA C:609 , 12P C:610 , HOH C:724 , THR E:490 , TYR E:491 , HOH E:705
BINDING SITE FOR RESIDUE HEC E 601
23
CC5
SOFTWARE
TYR E:140 , LYS E:141 , CYS E:196 , HIS E:200 , GLU E:203 , ASN E:259 , CYS E:263 , CYS E:266 , HIS E:267 , ALA E:274 , SER E:277 , ARG E:278 , ARG E:319 , LEU E:320 , ALA E:335 , MET E:339 , HIS E:347 , HEM E:603 , HEM E:607 , HOH E:793 , HOH E:868
BINDING SITE FOR RESIDUE HEM E 602
24
CC6
SOFTWARE
THR E:122 , HIS E:123 , LYS E:141 , LYS E:144 , LEU E:145 , VAL E:167 , THR E:195 , CYS E:196 , CYS E:199 , HIS E:200 , CYS E:263 , HIS E:267 , PHE E:272 , SER E:273 , ALA E:274 , HEM E:602 , HEM E:605 , HOH E:760 , HOH E:870
BINDING SITE FOR RESIDUE HEM E 603
25
CC7
SOFTWARE
SER A:389 , GLU A:390 , ARG A:391 , TYR E:81 , TYR E:88 , PRO E:94 , GLU E:96 , ALA E:98 , CYS E:103 , CYS E:106 , HIS E:107 , GLU E:110 , CYS E:169 , HIS E:173 , HIS E:184 , ILE E:188 , MET E:190 , HEM E:605 , HOH E:786
BINDING SITE FOR RESIDUE HEM E 604
26
CC8
SOFTWARE
HIS A:388 , SER A:389 , TYR E:81 , PRO E:84 , HIS E:107 , TRP E:114 , TRP E:118 , HIS E:123 , VAL E:167 , GLY E:168 , CYS E:169 , CYS E:172 , HIS E:173 , MET E:190 , PRO E:191 , LYS E:262 , ASP E:264 , ARG E:269 , HIS E:270 , PHE E:272 , HEM E:603 , HEM E:604 , HOH E:711
BINDING SITE FOR RESIDUE HEM E 605
27
CC9
SOFTWARE
HEC A:608 , CYS E:283 , HIS E:287 , ASN E:294 , TYR E:298 , PRO E:332 , THR E:333 , CYS E:334 , CYS E:337 , HIS E:338 , THR E:353 , ARG E:354 , TRP E:355 , ALA E:356 , TRP E:380 , MET E:400 , HIS E:483 , HEM E:607 , HEM E:608 , HOH E:707 , HOH E:961
BINDING SITE FOR RESIDUE HEM E 606
28
DC1
SOFTWARE
HEC A:608 , PRO E:226 , SER E:227 , HIS E:228 , ASP E:231 , ALA E:234 , CYS E:256 , HIS E:257 , ASN E:259 , ASN E:265 , CYS E:266 , ALA E:282 , CYS E:283 , CYS E:286 , HIS E:287 , CYS E:334 , ILE E:349 , THR E:353 , ALA E:356 , HEM E:602 , HEM E:606 , HOH E:717
BINDING SITE FOR RESIDUE HEM E 607
29
DC2
SOFTWARE
LYS C:262 , ASP C:264 , THR C:268 , ARG C:269 , HIS E:303 , PHE E:324 , ASN E:330 , ALA E:331 , PRO E:332 , THR E:383 , CYS E:384 , CYS E:387 , HIS E:388 , PHE E:392 , TYR E:396 , VAL E:484 , HEM E:606 , HOH E:734 , HOH E:752 , HOH E:771 , HOH E:776
BINDING SITE FOR RESIDUE HEM E 608
30
DC3
SOFTWARE
LEU E:39 , ASP E:40 , ALA E:44 , GLU E:48 , HOH E:934
BINDING SITE FOR RESIDUE PO4 E 609
31
DC4
SOFTWARE
TYR A:491 , HEC A:608 , ASP E:291 , HIS E:292
BINDING SITE FOR RESIDUE HOA E 610
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SAPs(SNPs)/Variants
(0, 0)
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PROSITE Patterns/Profiles
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Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 3)
Info
All SCOP Domains
1a: SCOP_d4n4oa_ (A:)
1b: SCOP_d4n4oc_ (C:)
1c: SCOP_d4n4oe_ (E:)
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All alpha proteins
(14657)
Fold
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Multiheme cytochromes
(149)
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Multiheme cytochromes
(149)
Family
:
Di-heme elbow motif
(53)
Protein domain
:
automated matches
(16)
Nitrosomonas europaea [TaxId: 915]
(2)
1a
d4n4oa_
A:
1b
d4n4oc_
C:
1c
d4n4oe_
E:
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