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4MZ8
Asym. Unit
Info
Asym.Unit (474 KB)
Biol.Unit 1 (466 KB)
Biol.Unit 2 (459 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE INOSINE 5'-MONOPHOSPHATE DEHYDROGENASE, WITH AN INTERNAL DELETION OF CBS DOMAIN FROM CAMPYLOBACTER JEJUNI COMPLEXED WITH INHIBITOR COMPOUND C91
Authors
:
Y. Kim, M. Makowska-Grzyska, M. Gu, S. K. Gorla, L. Hedstrom, W. F. Ander A. Joachimiak, Csgid, Center For Structural Genomics Of Infect Diseases (Csgid)
Date
:
29 Sep 13 (Deposition) - 16 Jul 14 (Release) - 17 May 17 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.50
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B (2x)
Biol. Unit 2: C,D (2x)
Keywords
:
Structural Genomics, Niaid, National Institute Of Allergy And Infectious Diseases, Center For Structural Genomics Of Infectious Diseases, Csgid, Tim Barrel, Alpha-Beta Structure, Oxidoreductase- Oxidoreductase Inhibitor Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
Y. Kim, M. Makowska-Grzyska, M. Gu, W. F. Anderson, A. Joachimiak
Crystal Structure Of The Inosine 5'-Monophosphate Dehydrogenase, With A Internal Deletion Of Cbs Domain From Campylobacter Jejuni Complexed With Inhibitor Compound C91
To Be Published
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Hetero Components
(9, 31)
Info
All Hetero Components
1a: DIMETHYL ETHER (2F2a)
2a: ACETIC ACID (ACYa)
2b: ACETIC ACID (ACYb)
3a: N-(NAPHTHALEN-2-YL)-2-[2-(PYRIDIN-... (C91a)
3b: N-(NAPHTHALEN-2-YL)-2-[2-(PYRIDIN-... (C91b)
3c: N-(NAPHTHALEN-2-YL)-2-[2-(PYRIDIN-... (C91c)
3d: N-(NAPHTHALEN-2-YL)-2-[2-(PYRIDIN-... (C91d)
4a: CHLORIDE ION (CLa)
4b: CHLORIDE ION (CLb)
4c: CHLORIDE ION (CLc)
4d: CHLORIDE ION (CLd)
4e: CHLORIDE ION (CLe)
5a: 1,2-ETHANEDIOL (EDOa)
5b: 1,2-ETHANEDIOL (EDOb)
5c: 1,2-ETHANEDIOL (EDOc)
6a: FORMIC ACID (FMTa)
6b: FORMIC ACID (FMTb)
7a: GLYCEROL (GOLa)
7b: GLYCEROL (GOLb)
7c: GLYCEROL (GOLc)
7d: GLYCEROL (GOLd)
8a: INOSINIC ACID (IMPa)
8b: INOSINIC ACID (IMPb)
8c: INOSINIC ACID (IMPc)
8d: INOSINIC ACID (IMPd)
9a: SULFATE ION (SO4a)
9b: SULFATE ION (SO4b)
9c: SULFATE ION (SO4c)
9d: SULFATE ION (SO4d)
9e: SULFATE ION (SO4e)
9f: SULFATE ION (SO4f)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
2F2
1
Ligand/Ion
DIMETHYL ETHER
2
ACY
2
Ligand/Ion
ACETIC ACID
3
C91
4
Ligand/Ion
N-(NAPHTHALEN-2-YL)-2-[2-(PYRIDIN-2-YL)-1H-BENZIMIDAZOL-1-YL]ACETAMIDE
4
CL
5
Ligand/Ion
CHLORIDE ION
5
EDO
3
Ligand/Ion
1,2-ETHANEDIOL
6
FMT
2
Ligand/Ion
FORMIC ACID
7
GOL
4
Ligand/Ion
GLYCEROL
8
IMP
4
Ligand/Ion
INOSINIC ACID
9
SO4
6
Ligand/Ion
SULFATE ION
[
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Sites
(31, 31)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
30: DC3 (SOFTWARE)
31: DC4 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ALA A:46 , MET A:48 , ASN A:273 , GLY A:298 , SER A:299 , ILE A:300 , CYS A:301 , ASP A:334 , GLY A:335 , GLY A:336 , MET A:355 , GLY A:357 , SER A:358 , TYR A:381 , GLY A:383 , MET A:384 , GLY A:385 , GLU A:411 , GLY A:412 , C91 A:502 , HOH A:610 , HOH A:625 , HOH A:646 , HOH A:680 , HOH A:681
BINDING SITE FOR RESIDUE IMP A 501
02
AC2
SOFTWARE
ALA A:246 , THR A:303 , MET A:384 , GLY A:385 , MET A:390 , LEU A:408 , GLU A:411 , IMP A:501 , GLY B:439 , TYR B:440
BINDING SITE FOR RESIDUE C91 A 502
03
AC3
SOFTWARE
TYR A:378 , ARG A:416 , HOH A:695 , THR B:472
BINDING SITE FOR RESIDUE SO4 A 503
04
AC4
SOFTWARE
SER A:422 , ARG A:424 , HOH A:635
BINDING SITE FOR RESIDUE GOL A 504
05
AC5
SOFTWARE
GLN A:226 , ARG A:229 , HOH A:668
BINDING SITE FOR RESIDUE FMT A 505
06
AC6
SOFTWARE
ILE A:29 , ASN A:40 , ASP A:207 , ARG A:435 , HOH A:662 , HOH A:665
BINDING SITE FOR RESIDUE ACY A 506
07
AC7
SOFTWARE
ARG A:62 , SER A:88 , GLU A:89 , LYS A:210
BINDING SITE FOR RESIDUE EDO A 507
08
AC8
SOFTWARE
THR A:460 , THR B:460
BINDING SITE FOR RESIDUE CL A 508
09
AC9
SOFTWARE
TYR A:373 , GLN A:374 , TYR D:373 , GLN D:374
BINDING SITE FOR RESIDUE 2F2 A 509
10
BC1
SOFTWARE
ALA B:46 , MET B:48 , ASN B:273 , GLY B:298 , SER B:299 , ILE B:300 , CYS B:301 , ASP B:334 , GLY B:335 , GLY B:336 , MET B:355 , GLY B:357 , SER B:358 , TYR B:381 , GLY B:383 , MET B:384 , GLY B:385 , GLU B:411 , GLY B:412 , C91 B:502 , ACY B:506 , HOH B:615 , HOH B:623 , HOH B:627 , HOH B:685 , HOH B:689
BINDING SITE FOR RESIDUE IMP B 501
11
BC2
SOFTWARE
SER A:436 , GLY A:439 , TYR A:440 , ALA B:246 , THR B:303 , GLY B:385 , MET B:390 , LEU B:408 , GLU B:411 , IMP B:501 , ACY B:506 , EDO B:509
BINDING SITE FOR RESIDUE C91 B 502
12
BC3
SOFTWARE
THR A:472 , TYR B:378 , ARG B:416
BINDING SITE FOR RESIDUE SO4 B 503
13
BC4
SOFTWARE
TYR B:19
BINDING SITE FOR RESIDUE CL B 504
14
BC5
SOFTWARE
ARG B:62
BINDING SITE FOR RESIDUE SO4 B 505
15
BC6
SOFTWARE
ASP B:244 , SER B:245 , ASN B:273 , IMP B:501 , C91 B:502
BINDING SITE FOR RESIDUE ACY B 506
16
BC7
SOFTWARE
PHE B:371 , TYR B:373 , ARG B:416 , TYR C:373 , ARG C:416
BINDING SITE FOR RESIDUE GOL B 507
17
BC8
SOFTWARE
TYR B:373 , GLN B:374 , ARG B:416 , TYR C:373 , GLN C:374
BINDING SITE FOR RESIDUE EDO B 508
18
BC9
SOFTWARE
SER B:245 , ALA B:246 , C91 B:502 , HOH B:620
BINDING SITE FOR RESIDUE EDO B 509
19
CC1
SOFTWARE
GLN B:226 , ARG B:229 , HOH B:672
BINDING SITE FOR RESIDUE FMT B 510
20
CC2
SOFTWARE
SER B:422 , ARG B:424 , HOH B:622
BINDING SITE FOR RESIDUE GOL B 511
21
CC3
SOFTWARE
ALA C:46 , MET C:48 , ASN C:273 , GLY C:298 , SER C:299 , ILE C:300 , CYS C:301 , ASP C:334 , GLY C:335 , GLY C:336 , MET C:355 , GLY C:357 , SER C:358 , TYR C:381 , GLY C:383 , MET C:384 , GLY C:385 , GLU C:411 , GLY C:412 , C91 C:502 , HOH C:610 , HOH C:623 , HOH C:630 , HOH C:643
BINDING SITE FOR RESIDUE IMP C 501
22
CC4
SOFTWARE
ALA C:246 , HIS C:247 , MET C:390 , GLU C:411 , IMP C:501 , PRO D:24 , GLY D:439
BINDING SITE FOR RESIDUE C91 C 502
23
CC5
SOFTWARE
ARG C:376 , TYR C:378 , ARG C:416 , THR D:472
BINDING SITE FOR RESIDUE SO4 C 503
24
CC6
SOFTWARE
ARG C:80 , ARG C:84
BINDING SITE FOR RESIDUE CL C 504
25
CC7
SOFTWARE
ARG C:62
BINDING SITE FOR RESIDUE CL C 505
26
CC8
SOFTWARE
SER C:422 , ARG C:424 , HOH C:642 , HOH C:646
BINDING SITE FOR RESIDUE SO4 C 506
27
CC9
SOFTWARE
THR C:460 , THR D:460
BINDING SITE FOR RESIDUE CL C 507
28
DC1
SOFTWARE
ALA D:46 , MET D:48 , GLY D:298 , SER D:299 , ILE D:300 , CYS D:301 , ASP D:334 , GLY D:335 , GLY D:336 , GLY D:357 , SER D:358 , TYR D:381 , GLY D:383 , MET D:384 , GLY D:385 , GLU D:411 , GLY D:412 , C91 D:502 , HOH D:604
BINDING SITE FOR RESIDUE IMP D 501
29
DC2
SOFTWARE
GLY C:439 , TYR C:440 , ALA D:246 , THR D:303 , GLY D:385 , MET D:390 , GLU D:411 , IMP D:501
BINDING SITE FOR RESIDUE C91 D 502
30
DC3
SOFTWARE
THR C:472 , TYR D:378 , ARG D:416
BINDING SITE FOR RESIDUE SO4 D 503
31
DC4
SOFTWARE
SER D:422 , ARG D:424 , SER D:425
BINDING SITE FOR RESIDUE GOL D 504
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
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[
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Exons
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Info
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
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CATH Domains
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Sorry, no Info available
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Pfam Domains
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