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4MZ1
Asym. Unit
Info
Asym.Unit (350 KB)
Biol.Unit 1 (451 KB)
Biol.Unit 2 (447 KB)
Biol.Unit 3 (458 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE INOSINE 5'-MONOPHOSPHATE DEHYDROGENASE, WITH A INTERNAL DELETION OF CBS DOMAIN FROM CAMPYLOBACTER JEJUNI COMPLEXED WITH INHIBITOR COMPOUND P12
Authors
:
Y. Kim, M. Makowska-Grzyska, M. Gu, W. F. Anderson, A. Joachimiak, Csgi For Structural Genomics Of Infectious Diseases (Csgid)
Date
:
28 Sep 13 (Deposition) - 01 Jan 14 (Release) - 01 Jan 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.40
Chains
:
Asym. Unit : A,B,C
Biol. Unit 1: A (4x)
Biol. Unit 2: B (4x)
Biol. Unit 3: C (4x)
Keywords
:
Structural Genomics, Niaid, National Institute Of Allergy And Infectious Diseases, Center For Structural Genomics Of Infectious Diseases, Csgid, Tim Barrel, Alpha-Beta Structure, Oxidoreductase- Oxidoreductase Inhibitor Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
Y. Kim, M. Makowska-Grzyska, M. Gu, W. F. Anderson, A. Joachimiak
Crystal Structure Of The Inosine 5'-Monophosphate Dehydrogenase, With A Internal Deletion Of Cbs Domain From Campylobacter Jejuni Complexed With Inhibitor Compound P12
To Be Published 2013
[
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Hetero Components
(6, 21)
Info
All Hetero Components
1a: 1-(4-BROMOPHENYL)-3-{2-[3-(PROP-1-... (2F1a)
1b: 1-(4-BROMOPHENYL)-3-{2-[3-(PROP-1-... (2F1b)
1c: 1-(4-BROMOPHENYL)-3-{2-[3-(PROP-1-... (2F1c)
2a: ACETIC ACID (ACYa)
2b: ACETIC ACID (ACYb)
3a: INOSINIC ACID (IMPa)
3b: INOSINIC ACID (IMPb)
3c: INOSINIC ACID (IMPc)
4a: POTASSIUM ION (Ka)
4b: POTASSIUM ION (Kb)
4c: POTASSIUM ION (Kc)
5a: PHOSPHATE ION (PO4a)
5b: PHOSPHATE ION (PO4b)
5c: PHOSPHATE ION (PO4c)
5d: PHOSPHATE ION (PO4d)
5e: PHOSPHATE ION (PO4e)
5f: PHOSPHATE ION (PO4f)
6a: SULFATE ION (SO4a)
6b: SULFATE ION (SO4b)
6c: SULFATE ION (SO4c)
6d: SULFATE ION (SO4d)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
2F1
3
Ligand/Ion
1-(4-BROMOPHENYL)-3-{2-[3-(PROP-1-EN-2-YL)PHENYL]PROPAN-2-YL}UREA
2
ACY
2
Ligand/Ion
ACETIC ACID
3
IMP
3
Ligand/Ion
INOSINIC ACID
4
K
3
Ligand/Ion
POTASSIUM ION
5
PO4
6
Ligand/Ion
PHOSPHATE ION
6
SO4
4
Ligand/Ion
SULFATE ION
[
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]
Sites
(21, 21)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ALA A:46 , MET A:48 , GLY A:298 , SER A:299 , ILE A:300 , CYS A:301 , ASP A:334 , GLY A:335 , GLY A:336 , MET A:355 , GLY A:357 , SER A:358 , TYR A:381 , GLY A:383 , MET A:384 , GLY A:385 , GLU A:411 , GLY A:412 , 2F1 A:501 , HOH A:601 , HOH A:606 , HOH A:610 , HOH A:615 , HOH A:628
BINDING SITE FOR RESIDUE IMP A 500
02
AC2
SOFTWARE
VAL A:22 , ALA A:246 , THR A:303 , GLY A:385 , GLU A:411 , GLY A:439 , TYR A:440 , IMP A:500
BINDING SITE FOR RESIDUE 2F1 A 501
03
AC3
SOFTWARE
GLY A:296 , GLY A:298 , CYS A:301 , GLU A:465 , SER A:466 , HIS A:467
BINDING SITE FOR RESIDUE K A 502
04
AC4
SOFTWARE
HIS A:54 , ARG A:55
BINDING SITE FOR RESIDUE SO4 A 503
05
AC5
SOFTWARE
ARG A:62
BINDING SITE FOR RESIDUE PO4 A 504
06
AC6
SOFTWARE
TYR A:378 , ARG A:416 , THR A:472
BINDING SITE FOR RESIDUE PO4 A 505
07
AC7
SOFTWARE
TYR A:373 , GLN A:374
BINDING SITE FOR RESIDUE PO4 A 506
08
AC8
SOFTWARE
ALA B:46 , MET B:48 , ASN B:273 , GLY B:298 , SER B:299 , ILE B:300 , CYS B:301 , ASP B:334 , GLY B:335 , GLY B:336 , MET B:355 , GLY B:357 , SER B:358 , TYR B:381 , GLY B:383 , MET B:384 , GLY B:385 , GLU B:411 , GLY B:412 , 2F1 B:501 , HOH B:604 , HOH B:636 , HOH B:637 , HOH B:654
BINDING SITE FOR RESIDUE IMP B 500
09
AC9
SOFTWARE
ALA B:246 , THR B:303 , MET B:384 , GLY B:385 , MET B:390 , GLU B:411 , GLY B:439 , TYR B:440 , IMP B:500
BINDING SITE FOR RESIDUE 2F1 B 501
10
BC1
SOFTWARE
GLY B:296 , GLY B:298 , CYS B:301 , GLU B:465 , SER B:466 , HIS B:467
BINDING SITE FOR RESIDUE K B 502
11
BC2
SOFTWARE
TYR B:378 , ARG B:416 , THR B:472
BINDING SITE FOR RESIDUE PO4 B 503
12
BC3
SOFTWARE
ARG B:62
BINDING SITE FOR RESIDUE SO4 B 504
13
BC4
SOFTWARE
HIS B:54
BINDING SITE FOR RESIDUE SO4 B 505
14
BC5
SOFTWARE
GLN B:226 , ARG B:229
BINDING SITE FOR RESIDUE PO4 B 506
15
BC6
SOFTWARE
TYR B:373 , GLN B:374 , TYR C:373
BINDING SITE FOR RESIDUE ACY C 501
16
BC7
SOFTWARE
ALA C:46 , MET C:48 , GLY C:298 , SER C:299 , ILE C:300 , CYS C:301 , ASP C:334 , GLY C:335 , GLY C:336 , MET C:355 , GLY C:357 , SER C:358 , TYR C:381 , GLY C:383 , MET C:384 , GLY C:385 , GLU C:411 , GLY C:412 , 2F1 C:503 , HOH C:615 , HOH C:625 , HOH C:655 , HOH C:656
BINDING SITE FOR RESIDUE IMP C 502
17
BC8
SOFTWARE
ALA C:246 , HIS C:247 , THR C:303 , MET C:384 , GLY C:385 , MET C:390 , GLU C:411 , GLY C:439 , TYR C:440 , IMP C:502
BINDING SITE FOR RESIDUE 2F1 C 503
18
BC9
SOFTWARE
GLY C:296 , GLY C:298 , CYS C:301 , GLU C:465 , SER C:466 , HIS C:467
BINDING SITE FOR RESIDUE K C 504
19
CC1
SOFTWARE
HIS C:54
BINDING SITE FOR RESIDUE SO4 C 505
20
CC2
SOFTWARE
ARG C:376 , TYR C:378 , ARG C:416 , THR C:472
BINDING SITE FOR RESIDUE PO4 C 506
21
CC3
SOFTWARE
ILE C:75 , GLN C:226 , MET C:227 , ASP C:228 , ARG C:229
BINDING SITE FOR RESIDUE ACY C 507
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
(0, 0)
Info
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 3)
Info
All SCOP Domains
1a: SCOP_d4mz1a_ (A:)
1b: SCOP_d4mz1b_ (B:)
1c: SCOP_d4mz1c_ (C:)
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(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
TIM beta/alpha-barrel
(3956)
Superfamily
:
Inosine monophosphate dehydrogenase (IMPDH)
(29)
Family
:
automated matches
(11)
Protein domain
:
automated matches
(11)
Campylobacter jejuni [TaxId: 192222]
(1)
1a
d4mz1a_
A:
1b
d4mz1b_
B:
1c
d4mz1c_
C:
[
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
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Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Chain B
Chain C
Asymmetric Unit 1
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select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
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show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
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Asym.Unit (350 KB)
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Biol.Unit 1 (451 KB)
Header - Biol.Unit 1
Biol.Unit 2 (447 KB)
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Biol.Unit 3 (458 KB)
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