PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
No precomputed SNP/Variant structure found.
Calculating the structure may take several minutes.
PLEASE WAIT...
Getting 'PROSITE' information from database.
PLEASE WAIT...
Getting 'Exon' information from database.
4MYX
Asym. Unit
Info
Asym.Unit (905 KB)
Biol.Unit 1 (448 KB)
Biol.Unit 2 (446 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
(1)
Title
:
CRYSTAL STRUCTURE OF THE INOSINE 5'-MONOPHOSPHATE DEHYDROGENASE, WITH A INTERNAL DELETION OF CBS DOMAIN FROM BACILLUS ANTHRACIS STR. AME COMPLEXED WITH P32
Authors
:
Y. Kim, M. Makowska-Grzyska, M. Gu, S. K. Gorla, L. Hedstrom, W. F. Ander A. Joachimiak, Csgid, Center For Structural Genomics Of Infect Diseases (Csgid)
Date
:
28 Sep 13 (Deposition) - 23 Jul 14 (Release) - 17 May 17 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.70
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: A,B,C,D (1x)
Biol. Unit 2: E,F,G,H (1x)
Keywords
:
Structural Genomics, Niaid, National Institute Of Allergy And Infectious Diseases, Center For Structural Genomics Of Infectious Diseases, Csgid, Tim Barrel, Alpha-Beta Structure, Oxidoreductase- Oxidoreductase Inhibitor Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
Y. Kim, M. Makowska-Grzyska, M. Gu, W. F. Anderson, A. Joachimiak
Crystal Structure Of The Inosine 5'-Monophosphate Dehydrogenase, With A Internal Deletion Of Cbs Domain From Bacillus Anthracis Str. Ame Complexed With P32
To Be Published
[
close entry info
]
Hetero Components
(7, 48)
Info
All Hetero Components
1a: 2-CHLORO-5-{[(2-{3-[(1E)-N-HYDROXY... (2F0a)
1b: 2-CHLORO-5-{[(2-{3-[(1E)-N-HYDROXY... (2F0b)
1c: 2-CHLORO-5-{[(2-{3-[(1E)-N-HYDROXY... (2F0c)
1d: 2-CHLORO-5-{[(2-{3-[(1E)-N-HYDROXY... (2F0d)
1e: 2-CHLORO-5-{[(2-{3-[(1E)-N-HYDROXY... (2F0e)
1f: 2-CHLORO-5-{[(2-{3-[(1E)-N-HYDROXY... (2F0f)
1g: 2-CHLORO-5-{[(2-{3-[(1E)-N-HYDROXY... (2F0g)
1h: 2-CHLORO-5-{[(2-{3-[(1E)-N-HYDROXY... (2F0h)
2a: 1,2-ETHANEDIOL (EDOa)
2b: 1,2-ETHANEDIOL (EDOb)
2c: 1,2-ETHANEDIOL (EDOc)
2d: 1,2-ETHANEDIOL (EDOd)
2e: 1,2-ETHANEDIOL (EDOe)
2f: 1,2-ETHANEDIOL (EDOf)
2g: 1,2-ETHANEDIOL (EDOg)
2h: 1,2-ETHANEDIOL (EDOh)
2i: 1,2-ETHANEDIOL (EDOi)
2j: 1,2-ETHANEDIOL (EDOj)
3a: FORMIC ACID (FMTa)
3b: FORMIC ACID (FMTb)
3c: FORMIC ACID (FMTc)
3d: FORMIC ACID (FMTd)
3e: FORMIC ACID (FMTe)
3f: FORMIC ACID (FMTf)
3g: FORMIC ACID (FMTg)
3h: FORMIC ACID (FMTh)
3i: FORMIC ACID (FMTi)
3j: FORMIC ACID (FMTj)
3k: FORMIC ACID (FMTk)
3l: FORMIC ACID (FMTl)
3m: FORMIC ACID (FMTm)
3n: FORMIC ACID (FMTn)
3o: FORMIC ACID (FMTo)
4a: GLYCEROL (GOLa)
4b: GLYCEROL (GOLb)
5a: INOSINIC ACID (IMPa)
5b: INOSINIC ACID (IMPb)
5c: INOSINIC ACID (IMPc)
5d: INOSINIC ACID (IMPd)
5e: INOSINIC ACID (IMPe)
5f: INOSINIC ACID (IMPf)
5g: INOSINIC ACID (IMPg)
5h: INOSINIC ACID (IMPh)
6a: MALONATE ION (MLIa)
6b: MALONATE ION (MLIb)
7a: SULFATE ION (SO4a)
7b: SULFATE ION (SO4b)
7c: SULFATE ION (SO4c)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
2F0
8
Ligand/Ion
2-CHLORO-5-{[(2-{3-[(1E)-N-HYDROXYETHANIMIDOYL]PHENYL}PROPAN-2-YL)CARBAMOYL]AMINO}BENZAMIDE
2
EDO
10
Ligand/Ion
1,2-ETHANEDIOL
3
FMT
15
Ligand/Ion
FORMIC ACID
4
GOL
2
Ligand/Ion
GLYCEROL
5
IMP
8
Ligand/Ion
INOSINIC ACID
6
MLI
2
Ligand/Ion
MALONATE ION
7
SO4
3
Ligand/Ion
SULFATE ION
[
close Hetero Component info
]
Sites
(46, 46)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
30: DC3 (SOFTWARE)
31: DC4 (SOFTWARE)
32: DC5 (SOFTWARE)
33: DC6 (SOFTWARE)
34: DC7 (SOFTWARE)
35: DC8 (SOFTWARE)
36: DC9 (SOFTWARE)
37: EC1 (SOFTWARE)
38: EC2 (SOFTWARE)
39: EC3 (SOFTWARE)
40: EC4 (SOFTWARE)
41: EC5 (SOFTWARE)
42: EC6 (SOFTWARE)
43: EC7 (SOFTWARE)
44: EC8 (SOFTWARE)
45: EC9 (SOFTWARE)
46: FC1 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ALA A:49 , MET A:51 , GLY A:305 , SER A:306 , ILE A:307 , CYS A:308 , ASP A:341 , GLY A:342 , GLY A:343 , MET A:362 , GLY A:364 , SER A:365 , TYR A:388 , GLY A:390 , MET A:391 , GLY A:392 , GLU A:416 , 2F0 A:502 , HOH A:604
BINDING SITE FOR RESIDUE IMP A 501
02
AC2
SOFTWARE
ALA A:253 , THR A:310 , MET A:391 , GLY A:392 , VAL A:414 , GLU A:416 , IMP A:501 , HOH A:645 , ALA C:441 , GLY C:444 , TYR C:445
BINDING SITE FOR RESIDUE 2F0 A 502
03
AC3
SOFTWARE
ARG A:311 , LEU C:17 , LYS C:352 , HIS C:472
BINDING SITE FOR RESIDUE FMT A 503
04
AC4
SOFTWARE
ILE A:379 , GLY A:382
BINDING SITE FOR RESIDUE FMT A 504
05
AC5
SOFTWARE
VAL A:476 , GLN A:477 , ILE A:478
BINDING SITE FOR RESIDUE GOL A 505
06
AC6
SOFTWARE
ALA A:284 , GLU A:285 , LYS A:288 , GLU A:330 , LYS A:333
BINDING SITE FOR RESIDUE MLI A 506
07
AC7
SOFTWARE
ALA B:49 , MET B:51 , GLY B:305 , SER B:306 , CYS B:308 , ASP B:341 , GLY B:342 , GLY B:343 , LEU B:363 , GLY B:364 , SER B:365 , TYR B:388 , GLY B:390 , MET B:391 , GLY B:392 , GLU B:416 , GLY B:417 , 2F0 B:501 , HOH B:609 , HOH B:613 , HOH B:625 , HOH B:638
BINDING SITE FOR RESIDUE IMP B 500
08
AC8
SOFTWARE
PRO A:27 , ALA A:441 , GLY A:444 , TYR A:445 , THR B:252 , ALA B:253 , HIS B:254 , MET B:391 , GLY B:392 , MET B:397 , VAL B:414 , GLU B:416 , IMP B:500
BINDING SITE FOR RESIDUE 2F0 B 501
09
AC9
SOFTWARE
SER A:464 , ARG B:462 , MET B:463
BINDING SITE FOR RESIDUE EDO B 502
10
BC1
SOFTWARE
THR B:283 , ALA B:284 , ASP B:326
BINDING SITE FOR RESIDUE FMT B 503
11
BC2
SOFTWARE
MET C:463 , HOH C:610
BINDING SITE FOR RESIDUE FMT C 501
12
BC3
SOFTWARE
ALA C:49 , MET C:51 , GLY C:305 , SER C:306 , ILE C:307 , CYS C:308 , THR C:310 , ASP C:341 , GLY C:342 , GLY C:343 , MET C:362 , GLY C:364 , SER C:365 , TYR C:388 , GLY C:390 , MET C:391 , GLY C:392 , GLU C:416 , GLY C:417 , 2F0 C:503 , HOH C:604 , HOH C:605 , HOH C:620
BINDING SITE FOR RESIDUE IMP C 502
13
BC4
SOFTWARE
HIS C:254 , THR C:310 , MET C:391 , GLY C:392 , VAL C:414 , GLU C:416 , IMP C:502 , LEU D:26 , PRO D:27 , ALA D:441 , GLY D:444 , TYR D:445
BINDING SITE FOR RESIDUE 2F0 C 503
14
BC5
SOFTWARE
THR C:34 , VAL C:35 , HIS C:359 , GLU C:452 , ARG C:455
BINDING SITE FOR RESIDUE EDO C 504
15
BC6
SOFTWARE
LYS C:333 , HIS C:334 , GLY C:335 , HOH C:642
BINDING SITE FOR RESIDUE SO4 C 505
16
BC7
SOFTWARE
MET C:366 , LYS C:425 , THR C:431 , GLN C:434 , PRO C:483 , ASN C:484
BINDING SITE FOR RESIDUE EDO C 506
17
BC8
SOFTWARE
ALA B:441 , GLY B:444 , TYR B:445 , ALA D:253 , THR D:310 , MET D:391 , MET D:397 , GLU D:416 , IMP D:504
BINDING SITE FOR RESIDUE 2F0 D 501
18
BC9
SOFTWARE
PHE C:6 , VAL C:7 , ARG D:462
BINDING SITE FOR RESIDUE EDO D 502
19
CC1
SOFTWARE
LYS D:425 , THR D:431 , PRO D:483
BINDING SITE FOR RESIDUE EDO D 503
20
CC2
SOFTWARE
ALA D:49 , MET D:51 , ASN D:280 , GLY D:305 , SER D:306 , ILE D:307 , CYS D:308 , THR D:310 , ASP D:341 , GLY D:342 , GLY D:343 , GLY D:364 , SER D:365 , TYR D:388 , GLY D:390 , MET D:391 , GLY D:392 , GLU D:416 , GLY D:417 , 2F0 D:501 , HOH D:609
BINDING SITE FOR RESIDUE IMP D 504
21
CC3
SOFTWARE
ASP D:58 , GLU D:372
BINDING SITE FOR RESIDUE EDO D 505
22
CC4
SOFTWARE
SER D:365 , MET D:366 , ALA D:368 , GLY D:369 , VAL D:422 , PRO D:423 , LYS D:425
BINDING SITE FOR RESIDUE FMT D 506
23
CC5
SOFTWARE
MET C:1 , ALA D:21 , CYS D:446 , ASN D:457 , ALA D:458
BINDING SITE FOR RESIDUE FMT D 507
24
CC6
SOFTWARE
ALA E:49 , MET E:51 , ASN E:280 , GLY E:305 , SER E:306 , ILE E:307 , CYS E:308 , ASP E:341 , GLY E:342 , GLY E:343 , MET E:362 , LEU E:363 , GLY E:364 , SER E:365 , TYR E:388 , GLY E:390 , MET E:391 , GLY E:392 , GLU E:416 , GLY E:417 , 2F0 E:502 , HOH E:608
BINDING SITE FOR RESIDUE IMP E 501
25
CC7
SOFTWARE
THR E:310 , MET E:391 , GLY E:392 , MET E:397 , GLU E:416 , IMP E:501 , ALA F:441 , GLY F:444 , TYR F:445
BINDING SITE FOR RESIDUE 2F0 E 502
26
CC8
SOFTWARE
GLU E:3
BINDING SITE FOR RESIDUE FMT E 503
27
CC9
SOFTWARE
VAL E:35 , HIS E:359
BINDING SITE FOR RESIDUE EDO E 505
28
DC1
SOFTWARE
PHE B:-4 , VAL E:476 , GLN E:477 , ILE E:478
BINDING SITE FOR RESIDUE GOL E 506
29
DC2
SOFTWARE
THR E:322
BINDING SITE FOR RESIDUE FMT E 507
30
DC3
SOFTWARE
ALA E:284 , GLU E:285 , LYS E:288 , GLU E:330
BINDING SITE FOR RESIDUE MLI E 508
31
DC4
SOFTWARE
PRO E:27 , ALA E:441 , GLY E:444 , TYR E:445 , THR G:252 , ALA G:253 , HIS G:254 , THR G:310 , MET G:391 , GLY G:392 , GLU G:416 , IMP G:501
BINDING SITE FOR RESIDUE 2F0 E 509
32
DC5
SOFTWARE
ALA F:49 , MET F:51 , GLY F:305 , SER F:306 , ILE F:307 , CYS F:308 , THR F:310 , ASP F:341 , GLY F:342 , GLY F:343 , MET F:362 , GLY F:364 , SER F:365 , TYR F:388 , GLY F:390 , MET F:391 , GLY F:392 , GLU F:416 , GLY F:417 , 2F0 F:502 , HOH F:606 , HOH F:607 , HOH F:608 , HOH F:612 , HOH F:613
BINDING SITE FOR RESIDUE IMP F 501
33
DC6
SOFTWARE
ALA F:253 , THR F:310 , GLY F:392 , VAL F:414 , GLU F:416 , IMP F:501 , LEU H:26 , PRO H:27 , ALA H:441 , GLY H:444 , TYR H:445
BINDING SITE FOR RESIDUE 2F0 F 502
34
DC7
SOFTWARE
THR F:283 , ALA F:284 , ASP F:326
BINDING SITE FOR RESIDUE FMT F 503
35
DC8
SOFTWARE
VAL F:35 , HIS F:359 , ARG F:455
BINDING SITE FOR RESIDUE EDO F 504
36
DC9
SOFTWARE
ARG E:311 , ASP F:14 , LEU F:17 , LYS F:352 , HIS F:472 , HOH F:611
BINDING SITE FOR RESIDUE EDO F 506
37
EC1
SOFTWARE
ARG F:332
BINDING SITE FOR RESIDUE FMT F 507
38
EC2
SOFTWARE
2F0 E:509 , ALA G:49 , MET G:51 , GLY G:305 , SER G:306 , ILE G:307 , CYS G:308 , ASP G:341 , GLY G:342 , GLY G:343 , GLY G:364 , SER G:365 , TYR G:388 , GLY G:390 , MET G:391 , GLY G:392 , GLU G:416 , GLY G:417 , HOH G:638 , HOH G:639
BINDING SITE FOR RESIDUE IMP G 501
39
EC3
SOFTWARE
VAL G:19 , PRO G:20 , ALA G:21 , GLN G:459
BINDING SITE FOR RESIDUE SO4 G 502
40
EC4
SOFTWARE
GLU G:38 , ARG G:268 , SER G:273 , LEU G:274 , ASN G:275 , ASN G:296
BINDING SITE FOR RESIDUE SO4 G 503
41
EC5
SOFTWARE
PHE F:6 , ARG H:462
BINDING SITE FOR RESIDUE FMT H 501
42
EC6
SOFTWARE
ARG F:311 , ASP H:14 , LEU H:17 , LYS H:352
BINDING SITE FOR RESIDUE FMT H 502
43
EC7
SOFTWARE
TYR H:325 , ASP H:326 , HOH H:617 , HOH H:618
BINDING SITE FOR RESIDUE FMT H 503
44
EC8
SOFTWARE
ALA H:49 , MET H:51 , ASN H:280 , GLY H:305 , SER H:306 , ILE H:307 , CYS H:308 , THR H:310 , ASP H:341 , GLY H:342 , GLY H:343 , MET H:362 , GLY H:364 , SER H:365 , TYR H:388 , GLY H:390 , MET H:391 , GLY H:392 , GLU H:416 , GLY H:417 , 2F0 H:505
BINDING SITE FOR RESIDUE IMP H 504
45
EC9
SOFTWARE
ALA G:441 , GLY G:444 , TYR G:445 , ALA H:253 , THR H:310 , MET H:391 , GLU H:416 , IMP H:504
BINDING SITE FOR RESIDUE 2F0 H 505
46
FC1
SOFTWARE
GLN H:41 , LEU H:42 , ASN H:43 , ALA H:64 , GLY H:67 , GLY H:68
BINDING SITE FOR RESIDUE FMT H 506
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
Select:
Label:
End label:
Sorry, no Info available
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
View:
Select:
Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(0, 0)
Info
All SCOP Domains
View:
Select:
Label:
Sorry, no Info available
[
close SCOP info
]
CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
[
close CATH info
]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
Sorry, no Info available
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Chain B
Chain C
Chain D
Chain E
Chain F
Chain G
Chain H
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (905 KB)
Header - Asym.Unit
Biol.Unit 1 (448 KB)
Header - Biol.Unit 1
Biol.Unit 2 (446 KB)
Header - Biol.Unit 2
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
4MYX
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help