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4MY8
Asym. Unit
Info
Asym.Unit (436 KB)
Biol.Unit 1 (423 KB)
Biol.Unit 2 (420 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE INOSINE 5'-MONOPHOSPHATE DEHYDROGENASE WITH AN INTERNAL DELETION OF THE CBS DOMAIN FROM BACILLUS ANTHRACIS STR. AMES COMPLEXED WITH INHIBITOR Q21
Authors
:
Y. Kim, M. Makowska-Grzyska, M. Gu, S. K. Gorla, M. Kavitha, G. Cuny, L. H W. F. Anderson, A. Joachimiak, Csgid, Center For Structural Genom Infectious Diseases (Csgid)
Date
:
27 Sep 13 (Deposition) - 13 Nov 13 (Release) - 13 Nov 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.29
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,D (2x)
Biol. Unit 2: B,C (2x)
Keywords
:
Structural Genomics, Niaid, National Institute Of Allergy And Infectious Diseases, Center For Structural Genomics Of Infectious Diseases, Csgid, Tim Barrel, Alpha-Beta Structure, Oxidoreductase- Oxidoreductase Inhibitor Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
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)
Reference
:
Y. Kim, M. Makowska-Grzyska, M. Gu, S. K. Gorla, M. Kavitha, G. Cuny, L. Hedstrom, W. F. Anderson, A. Joachimiak
Crystal Structure Of The Inosine 5'-Monophosphate Dehydrogenase With An Internal Deletion Of The Cbs Domain From Bacillus Anthracis Str. Ames Complexed With Inhibitor Q21
To Be Published 2013
[
close entry info
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Hetero Components
(5, 24)
Info
All Hetero Components
1a: ACETIC ACID (ACYa)
1b: ACETIC ACID (ACYb)
2a: 1,2-ETHANEDIOL (EDOa)
2b: 1,2-ETHANEDIOL (EDOb)
2c: 1,2-ETHANEDIOL (EDOc)
2d: 1,2-ETHANEDIOL (EDOd)
2e: 1,2-ETHANEDIOL (EDOe)
2f: 1,2-ETHANEDIOL (EDOf)
3a: FORMIC ACID (FMTa)
3b: FORMIC ACID (FMTb)
3c: FORMIC ACID (FMTc)
3d: FORMIC ACID (FMTd)
3e: FORMIC ACID (FMTe)
3f: FORMIC ACID (FMTf)
3g: FORMIC ACID (FMTg)
3h: FORMIC ACID (FMTh)
4a: INOSINIC ACID (IMPa)
4b: INOSINIC ACID (IMPb)
4c: INOSINIC ACID (IMPc)
4d: INOSINIC ACID (IMPd)
5a: (2S)-2-(NAPHTHALEN-1-YLOXY)-N-[2-(... (Q21a)
5b: (2S)-2-(NAPHTHALEN-1-YLOXY)-N-[2-(... (Q21b)
5c: (2S)-2-(NAPHTHALEN-1-YLOXY)-N-[2-(... (Q21c)
5d: (2S)-2-(NAPHTHALEN-1-YLOXY)-N-[2-(... (Q21d)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ACY
2
Ligand/Ion
ACETIC ACID
2
EDO
6
Ligand/Ion
1,2-ETHANEDIOL
3
FMT
8
Ligand/Ion
FORMIC ACID
4
IMP
4
Ligand/Ion
INOSINIC ACID
5
Q21
4
Ligand/Ion
(2S)-2-(NAPHTHALEN-1-YLOXY)-N-[2-(PYRIDIN-4-YL)-1,3-BENZOXAZOL-5-YL]PROPANAMIDE
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Sites
(22, 22)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ALA A:49 , MET A:51 , ASN A:280 , GLY A:305 , SER A:306 , ILE A:307 , CYS A:308 , ASP A:341 , GLY A:342 , GLY A:343 , MET A:362 , GLY A:364 , SER A:365 , TYR A:388 , GLY A:390 , MET A:391 , GLY A:392 , GLU A:416 , GLY A:417 , Q21 A:502 , HOH A:606 , HOH A:638 , HOH A:653 , HOH A:654
BINDING SITE FOR RESIDUE IMP A 501
02
AC2
SOFTWARE
ALA A:253 , SER A:257 , MET A:391 , GLY A:392 , GLU A:416 , IMP A:501 , HOH A:609
BINDING SITE FOR RESIDUE Q21 A 502
03
AC3
SOFTWARE
VAL A:30 , SER A:31 , VAL A:32 , LYS A:33 , ARG A:440
BINDING SITE FOR RESIDUE EDO A 503
04
AC4
SOFTWARE
ALA A:62 , ARG A:65 , GLU A:372
BINDING SITE FOR RESIDUE EDO A 504
05
AC5
SOFTWARE
ALA A:64 , GLY A:67 , GLY A:68 , LEU A:222
BINDING SITE FOR RESIDUE FMT A 505
06
AC6
SOFTWARE
SER A:273 , ASN A:275
BINDING SITE FOR RESIDUE FMT A 506
07
AC7
SOFTWARE
TYR A:346 , SER A:347 , VAL D:312
BINDING SITE FOR RESIDUE ACY A 507
08
AC8
SOFTWARE
ALA B:49 , MET B:51 , ASN B:280 , GLY B:305 , SER B:306 , ILE B:307 , CYS B:308 , ASP B:341 , GLY B:343 , LEU B:363 , GLY B:364 , SER B:365 , TYR B:388 , GLY B:390 , MET B:391 , GLY B:392 , GLU B:416 , GLY B:417 , Q21 B:502 , HOH B:609 , HOH B:613 , HOH B:619 , HOH B:637
BINDING SITE FOR RESIDUE IMP B 501
09
AC9
SOFTWARE
ALA B:253 , SER B:257 , MET B:391 , GLY B:392 , MET B:397 , LEU B:413 , GLU B:416 , IMP B:501
BINDING SITE FOR RESIDUE Q21 B 502
10
BC1
SOFTWARE
ARG B:268
BINDING SITE FOR RESIDUE EDO B 503
11
BC2
SOFTWARE
ASN B:275 , ASN B:296
BINDING SITE FOR RESIDUE FMT B 504
12
BC3
SOFTWARE
GLU B:9 , THR B:322
BINDING SITE FOR RESIDUE EDO B 505
13
BC4
SOFTWARE
TYR B:424 , LYS B:425 , GLY B:426 , HOH B:656 , HOH B:676
BINDING SITE FOR RESIDUE FMT B 506
14
BC5
SOFTWARE
SER B:23 , VAL B:25 , PRO B:27 , ALA B:441 , GLY B:444 , TYR B:445 , ALA C:253 , SER C:257 , MET C:391 , GLY C:392 , LEU C:413 , GLU C:416 , IMP C:501
BINDING SITE FOR RESIDUE Q21 B 507
15
BC6
SOFTWARE
Q21 B:507 , ALA C:49 , MET C:51 , ASN C:280 , GLY C:305 , SER C:306 , CYS C:308 , ASP C:341 , GLY C:343 , GLY C:364 , SER C:365 , TYR C:388 , GLY C:390 , MET C:391 , GLY C:392 , GLU C:416 , GLY C:417 , HOH C:601 , HOH C:608 , HOH C:621 , HOH C:660
BINDING SITE FOR RESIDUE IMP C 501
16
BC7
SOFTWARE
GLN C:41 , LEU C:42 , ASN C:43 , HOH C:646 , HOH C:649
BINDING SITE FOR RESIDUE FMT C 502
17
BC8
SOFTWARE
LEU C:11 , THR C:322 , TYR C:325
BINDING SITE FOR RESIDUE ACY C 503
18
BC9
SOFTWARE
GLY A:437 , LYS D:412 , LEU D:413 , VAL D:414 , HOH D:644
BINDING SITE FOR RESIDUE EDO D 501
19
CC1
SOFTWARE
ALA D:49 , MET D:51 , ASN D:280 , SER D:306 , ILE D:307 , CYS D:308 , ASP D:341 , GLY D:342 , GLY D:343 , LEU D:363 , GLY D:364 , SER D:365 , TYR D:388 , GLY D:390 , MET D:391 , GLY D:392 , GLU D:416 , GLY D:417 , Q21 D:503 , HOH D:601 , HOH D:606 , HOH D:609 , HOH D:635
BINDING SITE FOR RESIDUE IMP D 502
20
CC2
SOFTWARE
SER A:23 , LEU A:26 , ALA A:441 , TYR A:445 , ALA D:253 , SER D:257 , MET D:391 , GLY D:392 , LEU D:413 , VAL D:414 , GLU D:416 , IMP D:502 , HOH D:621
BINDING SITE FOR RESIDUE Q21 D 503
21
CC3
SOFTWARE
THR D:322
BINDING SITE FOR RESIDUE FMT D 504
22
CC4
SOFTWARE
ARG D:268 , SER D:273 , ASN D:275 , ASN D:296
BINDING SITE FOR RESIDUE FMT D 506
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
Info
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d4my8a_ (A:)
1b: SCOP_d4my8b_ (B:)
1c: SCOP_d4my8c_ (C:)
1d: SCOP_d4my8d_ (D:)
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Protein Domains
(
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(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
TIM beta/alpha-barrel
(3956)
Superfamily
:
Inosine monophosphate dehydrogenase (IMPDH)
(29)
Family
:
automated matches
(11)
Protein domain
:
automated matches
(11)
Bacillus anthracis [TaxId: 198094]
(4)
1a
d4my8a_
A:
1b
d4my8b_
B:
1c
d4my8c_
C:
1d
d4my8d_
D:
[
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
(0, 0)
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Asymmetric Unit 1
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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