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4MY8
Biol. Unit 2
Info
Asym.Unit (436 KB)
Biol.Unit 1 (423 KB)
Biol.Unit 2 (420 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE INOSINE 5'-MONOPHOSPHATE DEHYDROGENASE WITH AN INTERNAL DELETION OF THE CBS DOMAIN FROM BACILLUS ANTHRACIS STR. AMES COMPLEXED WITH INHIBITOR Q21
Authors
:
Y. Kim, M. Makowska-Grzyska, M. Gu, S. K. Gorla, M. Kavitha, G. Cuny, L. H W. F. Anderson, A. Joachimiak, Csgid, Center For Structural Genom Infectious Diseases (Csgid)
Date
:
27 Sep 13 (Deposition) - 13 Nov 13 (Release) - 13 Nov 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.29
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,D (2x)
Biol. Unit 2: B,C (2x)
Keywords
:
Structural Genomics, Niaid, National Institute Of Allergy And Infectious Diseases, Center For Structural Genomics Of Infectious Diseases, Csgid, Tim Barrel, Alpha-Beta Structure, Oxidoreductase- Oxidoreductase Inhibitor Complex
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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Reference
:
Y. Kim, M. Makowska-Grzyska, M. Gu, S. K. Gorla, M. Kavitha, G. Cuny, L. Hedstrom, W. F. Anderson, A. Joachimiak
Crystal Structure Of The Inosine 5'-Monophosphate Dehydrogenase With An Internal Deletion Of The Cbs Domain From Bacillus Anthracis Str. Ames Complexed With Inhibitor Q21
To Be Published 2013
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Hetero Components
(5, 22)
Info
All Hetero Components
1a: ACETIC ACID (ACYa)
1b: ACETIC ACID (ACYb)
2a: 1,2-ETHANEDIOL (EDOa)
2b: 1,2-ETHANEDIOL (EDOb)
2c: 1,2-ETHANEDIOL (EDOc)
2d: 1,2-ETHANEDIOL (EDOd)
2e: 1,2-ETHANEDIOL (EDOe)
2f: 1,2-ETHANEDIOL (EDOf)
3a: FORMIC ACID (FMTa)
3b: FORMIC ACID (FMTb)
3c: FORMIC ACID (FMTc)
3d: FORMIC ACID (FMTd)
3e: FORMIC ACID (FMTe)
3f: FORMIC ACID (FMTf)
3g: FORMIC ACID (FMTg)
3h: FORMIC ACID (FMTh)
4a: INOSINIC ACID (IMPa)
4b: INOSINIC ACID (IMPb)
4c: INOSINIC ACID (IMPc)
4d: INOSINIC ACID (IMPd)
5a: (2S)-2-(NAPHTHALEN-1-YLOXY)-N-[2-(... (Q21a)
5b: (2S)-2-(NAPHTHALEN-1-YLOXY)-N-[2-(... (Q21b)
5c: (2S)-2-(NAPHTHALEN-1-YLOXY)-N-[2-(... (Q21c)
5d: (2S)-2-(NAPHTHALEN-1-YLOXY)-N-[2-(... (Q21d)
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Label:
No.
Name
Count
Type
Full Name
1
ACY
2
Ligand/Ion
ACETIC ACID
2
EDO
4
Ligand/Ion
1,2-ETHANEDIOL
3
FMT
8
Ligand/Ion
FORMIC ACID
4
IMP
4
Ligand/Ion
INOSINIC ACID
5
Q21
4
Ligand/Ion
(2S)-2-(NAPHTHALEN-1-YLOXY)-N-[2-(PYRIDIN-4-YL)-1,3-BENZOXAZOL-5-YL]PROPANAMIDE
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Sites
(10, 10)
Info
All Sites
01: AC8 (SOFTWARE)
02: AC9 (SOFTWARE)
03: BC1 (SOFTWARE)
04: BC2 (SOFTWARE)
05: BC3 (SOFTWARE)
06: BC4 (SOFTWARE)
07: BC5 (SOFTWARE)
08: BC6 (SOFTWARE)
09: BC7 (SOFTWARE)
10: BC8 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
01
AC8
SOFTWARE
ALA B:49 , MET B:51 , ASN B:280 , GLY B:305 , SER B:306 , ILE B:307 , CYS B:308 , ASP B:341 , GLY B:343 , LEU B:363 , GLY B:364 , SER B:365 , TYR B:388 , GLY B:390 , MET B:391 , GLY B:392 , GLU B:416 , GLY B:417 , Q21 B:502 , HOH B:609 , HOH B:613 , HOH B:619 , HOH B:637
BINDING SITE FOR RESIDUE IMP B 501
02
AC9
SOFTWARE
ALA B:253 , SER B:257 , MET B:391 , GLY B:392 , MET B:397 , LEU B:413 , GLU B:416 , IMP B:501
BINDING SITE FOR RESIDUE Q21 B 502
03
BC1
SOFTWARE
ARG B:268
BINDING SITE FOR RESIDUE EDO B 503
04
BC2
SOFTWARE
ASN B:275 , ASN B:296
BINDING SITE FOR RESIDUE FMT B 504
05
BC3
SOFTWARE
GLU B:9 , THR B:322
BINDING SITE FOR RESIDUE EDO B 505
06
BC4
SOFTWARE
TYR B:424 , LYS B:425 , GLY B:426 , HOH B:656 , HOH B:676
BINDING SITE FOR RESIDUE FMT B 506
07
BC5
SOFTWARE
SER B:23 , VAL B:25 , PRO B:27 , ALA B:441 , GLY B:444 , TYR B:445 , ALA C:253 , SER C:257 , MET C:391 , GLY C:392 , LEU C:413 , GLU C:416 , IMP C:501
BINDING SITE FOR RESIDUE Q21 B 507
08
BC6
SOFTWARE
Q21 B:507 , ALA C:49 , MET C:51 , ASN C:280 , GLY C:305 , SER C:306 , CYS C:308 , ASP C:341 , GLY C:343 , GLY C:364 , SER C:365 , TYR C:388 , GLY C:390 , MET C:391 , GLY C:392 , GLU C:416 , GLY C:417 , HOH C:601 , HOH C:608 , HOH C:621 , HOH C:660
BINDING SITE FOR RESIDUE IMP C 501
09
BC7
SOFTWARE
GLN C:41 , LEU C:42 , ASN C:43 , HOH C:646 , HOH C:649
BINDING SITE FOR RESIDUE FMT C 502
10
BC8
SOFTWARE
LEU C:11 , THR C:322 , TYR C:325
BINDING SITE FOR RESIDUE ACY C 503
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d4my8a_ (A:)
1b: SCOP_d4my8b_ (B:)
1c: SCOP_d4my8c_ (C:)
1d: SCOP_d4my8d_ (D:)
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Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
TIM beta/alpha-barrel
(3956)
Superfamily
:
Inosine monophosphate dehydrogenase (IMPDH)
(29)
Family
:
automated matches
(11)
Protein domain
:
automated matches
(11)
Bacillus anthracis [TaxId: 198094]
(4)
1a
d4my8a_
A:
1b
d4my8b_
B:
1c
d4my8c_
C:
1d
d4my8d_
D:
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CATH Domains
(0, 0)
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Pfam Domains
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Show PDB file:
Asym.Unit (436 KB)
Header - Asym.Unit
Biol.Unit 1 (423 KB)
Header - Biol.Unit 1
Biol.Unit 2 (420 KB)
Header - Biol.Unit 2
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