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4MVH
Biol. Unit 1
Info
Asym.Unit (218 KB)
Biol.Unit 1 (210 KB)
Biol.Unit 2 (316 KB)
Biol.Unit 3 (312 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF PDE10A WITH NOVEL KETO-BENZIMIDAZOLE INHIBITOR
Authors
:
S. Chmait, S. Jordan
Date
:
24 Sep 13 (Deposition) - 23 Oct 13 (Release) - 15 Jan 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.50
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Biol. Unit 2: A (3x)
Biol. Unit 3: B (3x)
Keywords
:
Pde10A, Phosphodiesterase 10A, Inhibitors, Keto-Benzimidazoles, Hydrolase-Hydrolase Inhibitor Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
E. Hu, R. K. Kunz, N. Chen, S. Rumfelt, A. Siegmund, K. Andrews, S. Chmait, S. Zhao, C. Davis, H. Chen, D. Lester-Zeiner, J. Ma, C. Biorn J. Shi, A. Porter, J. Treanor, J. R. Allen
Design, Optimization, And Biological Evaluation Of Novel Keto-Benzimidazoles As Potent And Selective Inhibitors Of Phosphodiesterase 10A (Pde10A).
J. Med. Chem. V. 56 8781 2013
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Hetero Components
(2, 14)
Info
All Hetero Components
1a: 1H-BENZIMIDAZOL-2-YL(4-{[3-(MORPHO... (2F5a)
1b: 1H-BENZIMIDAZOL-2-YL(4-{[3-(MORPHO... (2F5b)
2a: SULFATE ION (SO4a)
2b: SULFATE ION (SO4b)
2c: SULFATE ION (SO4c)
2d: SULFATE ION (SO4d)
2e: SULFATE ION (SO4e)
2f: SULFATE ION (SO4f)
2g: SULFATE ION (SO4g)
2h: SULFATE ION (SO4h)
2i: SULFATE ION (SO4i)
2j: SULFATE ION (SO4j)
2k: SULFATE ION (SO4k)
2l: SULFATE ION (SO4l)
3a: ZINC ION (ZNa)
3b: ZINC ION (ZNb)
3c: ZINC ION (ZNc)
3d: ZINC ION (ZNd)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
2F5
2
Ligand/Ion
1H-BENZIMIDAZOL-2-YL(4-{[3-(MORPHOLIN-4-YL)PYRAZIN-2-YL]OXY}PHENYL)METHANONE
2
SO4
12
Ligand/Ion
SULFATE ION
3
ZN
-1
Ligand/Ion
ZINC ION
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Sites
(18, 18)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
HIS A:519 , HIS A:553 , ASP A:554 , ASP A:664 , ZN A:1002
BINDING SITE FOR RESIDUE ZN A 1001
02
AC2
SOFTWARE
ASP A:554 , ZN A:1001
BINDING SITE FOR RESIDUE ZN A 1002
03
AC3
SOFTWARE
PHE A:472 , GLU A:473 , ASN A:474 , MET A:475 , ARG A:510 , ARG A:558 , HIS A:570
BINDING SITE FOR RESIDUE SO4 A 1003
04
AC4
SOFTWARE
LYS A:497 , GLY A:597 , HIS A:598 , ASN A:599 , HOH A:1159
BINDING SITE FOR RESIDUE SO4 A 1004
05
AC5
SOFTWARE
ASN A:647 , ARG A:652 , LEU B:537 , LEU B:646 , ASN B:647 , ARG B:652
BINDING SITE FOR RESIDUE SO4 A 1005
06
AC6
SOFTWARE
ARG A:510 , ARG A:511
BINDING SITE FOR RESIDUE SO4 A 1006
07
AC7
SOFTWARE
SER A:577 , THR A:578 , GLN A:583
BINDING SITE FOR RESIDUE SO4 A 1007
08
AC8
SOFTWARE
ASN A:508 , GLN A:588 , SER A:591
BINDING SITE FOR RESIDUE SO4 A 1008
09
AC9
SOFTWARE
ASP A:468 , LYS A:518 , THR A:678 , LYS A:695 , HOH A:1144
BINDING SITE FOR RESIDUE SO4 A 1009
10
BC1
SOFTWARE
TYR A:514 , SER A:667 , VAL A:668 , ILE A:682 , TYR A:683 , PHE A:686 , PRO A:702 , MET A:703 , LYS A:708 , GLY A:715 , GLN A:716 , PHE A:719 , HOH A:1140
BINDING SITE FOR RESIDUE 2F5 A 1010
11
BC2
SOFTWARE
HIS B:519 , HIS B:553 , ASP B:554 , ASP B:664 , ZN B:802 , HOH B:901
BINDING SITE FOR RESIDUE ZN B 801
12
BC3
SOFTWARE
ASP B:554 , ZN B:801 , HOH B:927
BINDING SITE FOR RESIDUE ZN B 802
13
BC4
SOFTWARE
PHE B:472 , GLU B:473 , ASN B:474 , MET B:475 , ARG B:510 , ARG B:558 , HIS B:570
BINDING SITE FOR RESIDUE SO4 B 803
14
BC5
SOFTWARE
ARG B:510 , ARG B:511
BINDING SITE FOR RESIDUE SO4 B 804
15
BC6
SOFTWARE
LYS B:497 , GLY B:597 , HIS B:598 , ASN B:599
BINDING SITE FOR RESIDUE SO4 B 805
16
BC7
SOFTWARE
ASN A:645 , ASN A:647 , ASN A:648 , THR B:539 , ASP B:540
BINDING SITE FOR RESIDUE SO4 B 806
17
BC8
SOFTWARE
ASN B:508 , GLN B:588 , SER B:591 , ILE B:592
BINDING SITE FOR RESIDUE SO4 B 807
18
BC9
SOFTWARE
SER B:667 , VAL B:668 , ILE B:682 , TYR B:683 , PHE B:686 , PRO B:702 , MET B:703 , GLU B:711 , VAL B:712 , GLY B:715 , GLN B:716 , PHE B:719
BINDING SITE FOR RESIDUE 2F5 B 808
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
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PROSITE Patterns/Profiles
(, 0)
Info
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Exons
(0, 0)
Info
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d4mvha_ (A:)
1b: SCOP_d4mvhb_ (B:)
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Class
:
All alpha proteins
(14657)
Fold
:
HD-domain/PDEase-like
(204)
Superfamily
:
HD-domain/PDEase-like
(204)
Family
:
automated matches
(60)
Protein domain
:
automated matches
(60)
Human (Homo sapiens) [TaxId: 9606]
(44)
1a
d4mvha_
A:
1b
d4mvhb_
B:
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CATH Domains
(0, 0)
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Pfam Domains
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Asymmetric Unit 1
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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Show PDB file:
Asym.Unit (218 KB)
Header - Asym.Unit
Biol.Unit 1 (210 KB)
Header - Biol.Unit 1
Biol.Unit 2 (316 KB)
Header - Biol.Unit 2
Biol.Unit 3 (312 KB)
Header - Biol.Unit 3
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