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4MUU
Biol. Unit 1
Info
Asym.Unit (140 KB)
Biol.Unit 1 (66 KB)
Biol.Unit 2 (67 KB)
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(1)
Title
:
STRUCTURE OF THIT WITH PYRITHIAMINE BOUND
Authors
:
L. J. Y. M. Swier, A. Guskov, D. J. Slotboom
Date
:
23 Sep 13 (Deposition) - 17 Sep 14 (Release) - 17 Sep 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.10
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
S-Component, Ecf Transporter, Abc Transporter, Thiamine Binding Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
L. J. Y. M. Swier, L. Gomez, A. Guskov, A. K. H. Hirsch, D. J. Slotboom
Structural Studies On The Thiamin Binding Protein Thit
To Be Published
[
close entry info
]
Hetero Components
(7, 22)
Info
All Hetero Components
1a: PENTAETHYLENE GLYCOL (1PEa)
2a: 1-[(4-AMINO-2-METHYLPYRIMIDIN-5-YL... (218a)
2b: 1-[(4-AMINO-2-METHYLPYRIMIDIN-5-YL... (218b)
3a: B-NONYLGLUCOSIDE (BNGa)
3b: B-NONYLGLUCOSIDE (BNGb)
3c: B-NONYLGLUCOSIDE (BNGc)
4a: HEXAETHYLENE GLYCOL (P6Ga)
4b: HEXAETHYLENE GLYCOL (P6Gb)
4c: HEXAETHYLENE GLYCOL (P6Gc)
4d: HEXAETHYLENE GLYCOL (P6Gd)
5a: 3,6,9,12,15,18,21,24-OCTAOXAHEXACO... (PE5a)
6a: DI(HYDROXYETHYL)ETHER (PEGa)
6b: DI(HYDROXYETHYL)ETHER (PEGb)
6c: DI(HYDROXYETHYL)ETHER (PEGc)
6d: DI(HYDROXYETHYL)ETHER (PEGd)
6e: DI(HYDROXYETHYL)ETHER (PEGe)
6f: DI(HYDROXYETHYL)ETHER (PEGf)
6g: DI(HYDROXYETHYL)ETHER (PEGg)
6h: DI(HYDROXYETHYL)ETHER (PEGh)
6i: DI(HYDROXYETHYL)ETHER (PEGi)
6j: DI(HYDROXYETHYL)ETHER (PEGj)
7a: 2-(2-METHOXYETHOXY)ETHANOL (PG0a)
7b: 2-(2-METHOXYETHOXY)ETHANOL (PG0b)
7c: 2-(2-METHOXYETHOXY)ETHANOL (PG0c)
7d: 2-(2-METHOXYETHOXY)ETHANOL (PG0d)
7e: 2-(2-METHOXYETHOXY)ETHANOL (PG0e)
7f: 2-(2-METHOXYETHOXY)ETHANOL (PG0f)
7g: 2-(2-METHOXYETHOXY)ETHANOL (PG0g)
7h: 2-(2-METHOXYETHOXY)ETHANOL (PG0h)
8a: TETRAETHYLENE GLYCOL (PG4a)
8b: TETRAETHYLENE GLYCOL (PG4b)
8c: TETRAETHYLENE GLYCOL (PG4c)
8d: TETRAETHYLENE GLYCOL (PG4d)
8e: TETRAETHYLENE GLYCOL (PG4e)
8f: TETRAETHYLENE GLYCOL (PG4f)
8g: TETRAETHYLENE GLYCOL (PG4g)
8h: TETRAETHYLENE GLYCOL (PG4h)
8i: TETRAETHYLENE GLYCOL (PG4i)
9a: TRIETHYLENE GLYCOL (PGEa)
9b: TRIETHYLENE GLYCOL (PGEb)
9c: TRIETHYLENE GLYCOL (PGEc)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
1PE
1
Ligand/Ion
PENTAETHYLENE GLYCOL
2
218
1
Ligand/Ion
1-[(4-AMINO-2-METHYLPYRIMIDIN-5-YL)METHYL]-3-(2-HYDROXYETHYL)-2-METHYLPYRIDINIUM
3
BNG
1
Ligand/Ion
B-NONYLGLUCOSIDE
4
P6G
-1
Ligand/Ion
HEXAETHYLENE GLYCOL
5
PE5
-1
Ligand/Ion
3,6,9,12,15,18,21,24-OCTAOXAHEXACOSAN-1-OL
6
PEG
7
Ligand/Ion
DI(HYDROXYETHYL)ETHER
7
PG0
6
Ligand/Ion
2-(2-METHOXYETHOXY)ETHANOL
8
PG4
5
Ligand/Ion
TETRAETHYLENE GLYCOL
9
PGE
1
Ligand/Ion
TRIETHYLENE GLYCOL
[
close Hetero Component info
]
Sites
(27, 27)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC7 (SOFTWARE)
24: CC8 (SOFTWARE)
25: DC5 (SOFTWARE)
26: EC2 (SOFTWARE)
27: EC5 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
TRP A:44 , ILE A:46 , GLU A:48 , GLU A:94 , TYR A:95 , HIS A:135 , GLY A:139 , TRP A:143 , TYR A:156 , ASN A:161 , 1PE A:221 , HOH A:320
BINDING SITE FOR RESIDUE 218 A 201
02
AC2
SOFTWARE
ALA A:25 , ALA A:29 , ILE A:75 , LEU A:76 , ILE A:79 , PG4 A:218
BINDING SITE FOR RESIDUE BNG A 202
03
AC3
SOFTWARE
PHE A:108 , ALA A:118 , LEU A:122 , PG4 A:220 , TRP B:148
BINDING SITE FOR RESIDUE PEG A 203
04
AC4
SOFTWARE
LEU A:88 , LEU A:96 , PEG A:205
BINDING SITE FOR RESIDUE PEG A 204
05
AC5
SOFTWARE
LEU A:86 , SER A:87 , PEG A:204
BINDING SITE FOR RESIDUE PEG A 205
06
AC6
SOFTWARE
TRP A:148 , ILE A:163 , PEG A:207 , PEG B:204
BINDING SITE FOR RESIDUE PEG A 206
07
AC7
SOFTWARE
ILE A:163 , PEG A:206 , PG4 A:216 , LEU B:122 , PEG B:204
BINDING SITE FOR RESIDUE PEG A 207
08
AC8
SOFTWARE
VAL A:174 , ILE A:177 , ILE B:170
BINDING SITE FOR RESIDUE PEG A 208
09
AC9
SOFTWARE
LYS A:181 , LEU B:167 , ILE B:170
BINDING SITE FOR RESIDUE PEG A 209
10
BC1
SOFTWARE
PRO A:38 , THR A:40 , VAL A:47 , ILE A:49
BINDING SITE FOR RESIDUE PG0 A 210
11
BC2
SOFTWARE
PG4 A:218
BINDING SITE FOR RESIDUE PG0 A 211
12
BC3
SOFTWARE
LEU A:129 , LEU A:130 , P6G B:210
BINDING SITE FOR RESIDUE PG0 A 212
13
BC4
SOFTWARE
LEU A:129 , BNG B:203
BINDING SITE FOR RESIDUE PG0 A 213
14
BC5
SOFTWARE
LEU A:20 , HOH A:346
BINDING SITE FOR RESIDUE PG0 A 214
15
BC6
SOFTWARE
ILE A:170 , PHE B:173 , ILE B:177
BINDING SITE FOR RESIDUE PG0 A 215
16
BC7
SOFTWARE
VAL A:41 , PEG A:207 , LEU B:122 , PGE B:219
BINDING SITE FOR RESIDUE PG4 A 216
17
BC8
SOFTWARE
GLY A:150 , TRP A:151 , GLY A:152 , ALA A:155
BINDING SITE FOR RESIDUE PG4 A 217
18
BC9
SOFTWARE
PHE A:32 , MET A:78 , ILE A:79 , THR A:80 , GLY A:81 , BNG A:202 , PG0 A:211
BINDING SITE FOR RESIDUE PG4 A 218
19
CC1
SOFTWARE
LEU A:30 , ILE A:34
BINDING SITE FOR RESIDUE PG4 A 219
20
CC2
SOFTWARE
LEU A:107 , PHE A:108 , ARG A:109 , GLN A:110 , PEG A:203 , HOH A:309 , P6G B:210
BINDING SITE FOR RESIDUE PG4 A 220
21
CC3
SOFTWARE
SER A:35 , ASN A:39 , THR A:40 , GLY A:43 , TRP A:44 , ILE A:46 , GLU A:48 , ALA A:50 , TYR A:84 , 218 A:201 , PGE A:222 , HOH A:317 , HOH A:330 , HOH A:335
BINDING SITE FOR RESIDUE 1PE A 221
22
CC4
SOFTWARE
THR A:40 , GLY A:43 , 1PE A:221
BINDING SITE FOR RESIDUE PGE A 222
23
CC7
SOFTWARE
LEU A:158 , GLY A:162 , ILE A:166 , PG0 A:213 , LEU B:129 , PHE B:133
BINDING SITE FOR RESIDUE BNG B 203
24
CC8
SOFTWARE
PEG A:206 , PEG A:207 , VAL B:126
BINDING SITE FOR RESIDUE PEG B 204
25
DC5
SOFTWARE
PG0 A:212 , PG4 A:220 , GLY B:150 , TRP B:151 , VAL B:154 , ALA B:155
BINDING SITE FOR RESIDUE P6G B 210
26
EC2
SOFTWARE
LEU A:115 , LYS A:116 , HOH A:308 , THR B:40 , VAL B:41 , TYR B:42 , GLY B:43 , HOH B:343
BINDING SITE FOR RESIDUE PG4 B 216
27
EC5
SOFTWARE
PG4 A:216 , PHE B:108 , PRO B:119 , LEU B:122 , BNG B:202
BINDING SITE FOR RESIDUE PGE B 219
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
View:
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Sorry, no Info available
[
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PROSITE Patterns/Profiles
(, 0)
Info
All PROSITE Patterns/Profiles
;
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[
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Exons
(0, 0)
Info
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(0, 0)
Info
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Sorry, no Info available
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CATH Domains
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Info
all CATH domains
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Pfam Domains
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Info
all PFAM domains
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Sorry, no Info available
[
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Atom Selection
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Chain A
Asymmetric Unit 1
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select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
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show SS bonds with a radius of 100 units (=0.4Å)
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