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4MUR
Asym. Unit
Info
Asym.Unit (154 KB)
Biol.Unit 1 (147 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF VANCOMYCIN RESISTANCE D,D-DIPEPTIDASE/D,D-PENTAPEPTIDASE VANXYC D59S MUTANT
Authors
:
P. J. Stogios, E. Evdokimova, D. Meziane-Cherif, R. Di Leo, V. Yim, P. C A. Savchenko, W. F. Anderson, Center For Structural Genomics Of Infectious Diseases (Csgid)
Date
:
23 Sep 13 (Deposition) - 02 Oct 13 (Release) - 14 May 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.65
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Center For Structural Genomics Of Infectious Diseases, Csgid, National Institute Of Allergy And Infectious Diseases, Niaid, Alpha+Beta Protein, Metallopeptidase, Hedgehog/Dd-Peptidase Fold, Merops M15B Subfamily, Zn2+-Dependent D, D-Dipeptidase, Zn2+- Dependent D, D-Pentapeptidase, Vancomycin Resistance, Antibiotic Resistance, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
D. Meziane-Cherif, P. J. Stogios, E. Evdokimova, A. Savchenko, P. Courvalin
Structural Basis For The Evolution Of Vancomycin Resistance D, D-Peptidases.
Proc. Natl. Acad. Sci. Usa V. 111 5872 2014
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Hetero Components
(4, 13)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
1b: CHLORIDE ION (CLb)
1c: CHLORIDE ION (CLc)
1d: CHLORIDE ION (CLd)
1e: CHLORIDE ION (CLe)
1f: CHLORIDE ION (CLf)
2a: 3,6,9,12,15,18,21,24,27,30,33,36,3... (PE3a)
2b: 3,6,9,12,15,18,21,24,27,30,33,36,3... (PE3b)
2c: 3,6,9,12,15,18,21,24,27,30,33,36,3... (PE3c)
2d: 3,6,9,12,15,18,21,24,27,30,33,36,3... (PE3d)
3a: SULFATE ION (SO4a)
4a: ZINC ION (ZNa)
4b: ZINC ION (ZNb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CL
6
Ligand/Ion
CHLORIDE ION
2
PE3
4
Ligand/Ion
3,6,9,12,15,18,21,24,27,30,33,36,39-TRIDECAOXAHENTETRACONTANE-1,41-DIOL
3
SO4
1
Ligand/Ion
SULFATE ION
4
ZN
2
Ligand/Ion
ZINC ION
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Sites
(13, 13)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
HIS A:95 , ASP A:102 , HIS A:156 , HOH A:383 , HOH A:465
BINDING SITE FOR RESIDUE ZN A 201
02
AC2
SOFTWARE
GLN A:67 , ALA A:88 , SER A:93 , HOH A:598
BINDING SITE FOR RESIDUE CL A 202
03
AC3
SOFTWARE
ARG A:69 , HOH A:528 , LEU B:22
BINDING SITE FOR RESIDUE CL A 203
04
AC4
SOFTWARE
ASN A:8 , ASN A:10 , HIS A:11 , HOH A:470
BINDING SITE FOR RESIDUE CL A 204
05
AC5
SOFTWARE
HIS A:179
BINDING SITE FOR RESIDUE PE3 A 205
06
AC6
SOFTWARE
MET A:1 , ASN A:2 , GLN A:5 , LYS A:14 , GLN A:17
BINDING SITE FOR RESIDUE PE3 A 206
07
AC7
SOFTWARE
GLU A:37 , LYS A:40 , GLN A:41 , ARG A:44
BINDING SITE FOR RESIDUE PE3 A 207
08
AC8
SOFTWARE
PHE A:189 , HIS B:179 , ALA B:183 , HOH B:574
BINDING SITE FOR RESIDUE PE3 A 208
09
AC9
SOFTWARE
HIS B:95 , ASP B:102 , HIS B:156 , HOH B:353 , HOH B:385
BINDING SITE FOR RESIDUE ZN B 201
10
BC1
SOFTWARE
ARG A:119 , LYS B:65 , ARG B:68 , ARG B:69 , HOH B:411 , HOH B:480 , HOH B:563
BINDING SITE FOR RESIDUE SO4 B 202
11
BC2
SOFTWARE
GLN B:67 , ALA B:88 , HOH B:583
BINDING SITE FOR RESIDUE CL B 203
12
BC3
SOFTWARE
HIS A:21 , LEU A:22 , HOH A:580 , ARG B:69
BINDING SITE FOR RESIDUE CL B 204
13
BC4
SOFTWARE
HOH A:538 , THR B:63 , HOH B:436
BINDING SITE FOR RESIDUE CL B 205
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
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;
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
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CATH Domains
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Pfam Domains
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Asymmetric Unit 1
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Asym.Unit (154 KB)
Header - Asym.Unit
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