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Asym. Unit
Info
Asym.Unit (221 KB)
Biol.Unit 1 (214 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE COMPLEX OF GOAT LACTOPEROXIDASE WITH 3-HYDROXYMETHYL PHENOL AT 1.98 ANGSTROM RESOLUTION
Authors
:
A. Singh, R. P. Singh, M. Sinha, A. K. Singh, A. Bhushan, P. Kaur, S. Sharm T. P. Singh
Date
:
18 Sep 13 (Deposition) - 23 Oct 13 (Release) - 23 Oct 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.98
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Peroxidase, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. Singh, R. P. Singh, M. Sinha, A. K. Singh, A. Bhushan, P. Kaur, S. Sharma, T. P. Singh
Crystal Structure Of The Complex Of Goat Lactoperoxidase With 3-Hydroxymethyl Phenol At 1. 98 Angstrom Resolution
To Be Published
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Hetero Components
(9, 28)
Info
All Hetero Components
1a: 3-(HYDROXYMETHYL)PHENOL (3HYa)
2a: CALCIUM ION (CAa)
3a: 1,2-ETHANEDIOL (EDOa)
3b: 1,2-ETHANEDIOL (EDOb)
4a: PROTOPORPHYRIN IX CONTAINING FE (HEMa)
5a: IODIDE ION (IODa)
5b: IODIDE ION (IODb)
5c: IODIDE ION (IODc)
5d: IODIDE ION (IODd)
5e: IODIDE ION (IODe)
5f: IODIDE ION (IODf)
5g: IODIDE ION (IODg)
5h: IODIDE ION (IODh)
5i: IODIDE ION (IODi)
5j: IODIDE ION (IODj)
5k: IODIDE ION (IODk)
5l: IODIDE ION (IODl)
5m: IODIDE ION (IODm)
5n: IODIDE ION (IODn)
5o: IODIDE ION (IODo)
6a: N-ACETYL-D-GLUCOSAMINE (NAGa)
6b: N-ACETYL-D-GLUCOSAMINE (NAGb)
6c: N-ACETYL-D-GLUCOSAMINE (NAGc)
6d: N-ACETYL-D-GLUCOSAMINE (NAGd)
7a: DI(HYDROXYETHYL)ETHER (PEGa)
7b: DI(HYDROXYETHYL)ETHER (PEGb)
8a: THIOCYANATE ION (SCNa)
9a: PHOSPHOSERINE (SEPa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
3HY
1
Ligand/Ion
3-(HYDROXYMETHYL)PHENOL
2
CA
1
Ligand/Ion
CALCIUM ION
3
EDO
2
Ligand/Ion
1,2-ETHANEDIOL
4
HEM
1
Ligand/Ion
PROTOPORPHYRIN IX CONTAINING FE
5
IOD
15
Ligand/Ion
IODIDE ION
6
NAG
4
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
7
PEG
2
Ligand/Ion
DI(HYDROXYETHYL)ETHER
8
SCN
1
Ligand/Ion
THIOCYANATE ION
9
SEP
1
Mod. Amino Acid
PHOSPHOSERINE
[
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]
Sites
(23, 23)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
MET A:101 , GLY A:104 , GLN A:105 , ASP A:108 , ASP A:112 , PHE A:113 , ALA A:114 , GLU A:258 , GLN A:259 , THR A:344 , PHE A:347 , ARG A:348 , GLY A:350 , HIS A:351 , VAL A:354 , PHE A:380 , LEU A:417 , LEU A:433 , ILE A:436 , ARG A:440 , 3HY A:627 , HOH A:713 , HOH A:930 , HOH A:1130 , HOH A:1194
BINDING SITE FOR RESIDUE HEM A 601
02
AC2
SOFTWARE
ASP A:110 , THR A:184 , PHE A:186 , ASP A:188 , SER A:190
BINDING SITE FOR RESIDUE CA A 602
03
AC3
SOFTWARE
ASN A:95 , ILE A:315 , HOH A:823 , HOH A:977 , HOH A:1147
BINDING SITE FOR RESIDUE NAG A 603
04
AC4
SOFTWARE
ASN A:205 , SER A:208 , ALA A:214 , VAL A:215 , GLN A:217 , HOH A:745 , HOH A:991 , HOH A:1002 , HOH A:1022
BINDING SITE FOR RESIDUE NAG A 604
05
AC5
SOFTWARE
ASN A:241 , TRP A:384 , LYS A:388 , HOH A:889 , HOH A:936 , HOH A:950 , HOH A:1027
BINDING SITE FOR RESIDUE NAG A 605
06
AC6
SOFTWARE
ASN A:332 , HOH A:1188
BINDING SITE FOR RESIDUE NAG A 606
07
AC7
SOFTWARE
TRP A:46 , VAL A:342 , TRP A:452
BINDING SITE FOR RESIDUE IOD A 607
08
AC8
SOFTWARE
ASN A:80
BINDING SITE FOR RESIDUE IOD A 608
09
AC9
SOFTWARE
ARG A:96
BINDING SITE FOR RESIDUE IOD A 609
10
BC1
SOFTWARE
TRP A:530
BINDING SITE FOR RESIDUE IOD A 610
11
BC2
SOFTWARE
ARG A:397 , THR A:560
BINDING SITE FOR RESIDUE IOD A 611
12
BC3
SOFTWARE
HIS A:565 , ALA A:566 , PHE A:567 , HOH A:823
BINDING SITE FOR RESIDUE IOD A 612
13
BC4
SOFTWARE
ALA A:225 , HOH A:723 , HOH A:1007
BINDING SITE FOR RESIDUE IOD A 614
14
BC5
SOFTWARE
SER A:359 , HOH A:807 , HOH A:1003
BINDING SITE FOR RESIDUE IOD A 615
15
BC6
SOFTWARE
PRO A:236 , THR A:425 , HOH A:1131
BINDING SITE FOR RESIDUE IOD A 616
16
BC7
SOFTWARE
LYS A:462 , HOH A:788
BINDING SITE FOR RESIDUE IOD A 617
17
BC8
SOFTWARE
GLU A:373
BINDING SITE FOR RESIDUE IOD A 619
18
BC9
SOFTWARE
PRO A:236 , CYS A:248 , PHE A:381 , PRO A:424 , 3HY A:627 , HOH A:933 , HOH A:1129
BINDING SITE FOR RESIDUE SCN A 622
19
CC1
SOFTWARE
ARG A:76 , ASN A:80 , PRO A:149 , LYS A:150 , ARG A:418 , ASN A:419 , HOH A:794 , HOH A:1056 , HOH A:1113
BINDING SITE FOR RESIDUE PEG A 623
20
CC2
SOFTWARE
ARG A:45 , TRP A:46 , LEU A:47 , PRO A:48 , HOH A:774 , HOH A:777 , HOH A:932
BINDING SITE FOR RESIDUE PEG A 624
21
CC3
SOFTWARE
HIS A:377 , HIS A:429
BINDING SITE FOR RESIDUE EDO A 625
22
CC4
SOFTWARE
ALA A:35 , LEU A:36 , ARG A:41 , HOH A:762 , HOH A:861
BINDING SITE FOR RESIDUE EDO A 626
23
CC5
SOFTWARE
HIS A:109 , ARG A:255 , GLU A:258 , PHE A:381 , HEM A:601 , SCN A:622 , HOH A:1194
BINDING SITE FOR RESIDUE 3HY A 627
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
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CATH Domains
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Pfam Domains
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Chain A
Asymmetric Unit 1
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select all 'ALA' residues (Alanines) in chain 'A'
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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Asym.Unit (221 KB)
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