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4MSD
Biol. Unit 1
Info
Asym.Unit (71 KB)
Biol.Unit 1 (34 KB)
Biol.Unit 2 (34 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF SCHIZOSACCHAROMYCES POMBE AMSH-LIKE PROTEIN SST2 T319I MUTANT
Authors
:
R. K. Shrestha, J. A. Ronau, C. Das
Date
:
18 Sep 13 (Deposition) - 18 Jun 14 (Release) - 18 Jun 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.90
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Helix-Beta-Helix Sandwich, Ubiquitin, Deubiquitination, Zinc Metalloprotease, Amsh, Lysine 63-Linked Polyubiquitin, Cytosol, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
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)
Reference
:
R. K. Shrestha, J. A. Ronau, C. W. Davies, R. G. Guenette, E. R. Strieter L. N. Paul, C. Das
Insights Into The Mechanism Of Deubiquitination By Jamm Deubiquitinases From Cocrystal Structures Of The Enzyme Wit The Substrate And Product.
Biochemistry V. 53 3199 2014
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Hetero Components
(2, 8)
Info
All Hetero Components
1a: 2,3-DIHYDROXY-1,4-DITHIOBUTANE (DTTa)
2a: 1,2-ETHANEDIOL (EDOa)
2b: 1,2-ETHANEDIOL (EDOb)
2c: 1,2-ETHANEDIOL (EDOc)
2d: 1,2-ETHANEDIOL (EDOd)
2e: 1,2-ETHANEDIOL (EDOe)
2f: 1,2-ETHANEDIOL (EDOf)
2g: 1,2-ETHANEDIOL (EDOg)
2h: 1,2-ETHANEDIOL (EDOh)
2i: 1,2-ETHANEDIOL (EDOi)
2j: 1,2-ETHANEDIOL (EDOj)
2k: 1,2-ETHANEDIOL (EDOk)
2l: 1,2-ETHANEDIOL (EDOl)
2m: 1,2-ETHANEDIOL (EDOm)
2n: 1,2-ETHANEDIOL (EDOn)
3a: ZINC ION (ZNa)
3b: ZINC ION (ZNb)
3c: ZINC ION (ZNc)
3d: ZINC ION (ZNd)
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No.
Name
Count
Type
Full Name
1
DTT
1
Ligand/Ion
2,3-DIHYDROXY-1,4-DITHIOBUTANE
2
EDO
7
Ligand/Ion
1,2-ETHANEDIOL
3
ZN
-1
Ligand/Ion
ZINC ION
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Sites
(10, 10)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
HIS A:341 , HIS A:343 , ASP A:354 , HOH A:621
BINDING SITE FOR RESIDUE ZN A 501
02
AC2
SOFTWARE
HIS A:356 , CYS A:397 , HIS A:404 , HIS A:406
BINDING SITE FOR RESIDUE ZN A 502
03
AC3
SOFTWARE
CYS A:317 , GLY A:318 , ILE A:319 , THR A:357 , TYR A:361 , EDO A:509
BINDING SITE FOR RESIDUE EDO A 503
04
AC4
SOFTWARE
LYS A:409 , TYR A:411 , MET A:413 , EDO A:508
BINDING SITE FOR RESIDUE EDO A 504
05
AC5
SOFTWARE
GLN A:346 , EDO A:507 , HOH A:603 , HOH A:635
BINDING SITE FOR RESIDUE EDO A 505
06
AC6
SOFTWARE
SER A:360 , HOH A:647
BINDING SITE FOR RESIDUE EDO A 506
07
AC7
SOFTWARE
PHE A:349 , SER A:351 , SER A:352 , PHE A:403 , EDO A:505
BINDING SITE FOR RESIDUE EDO A 507
08
AC8
SOFTWARE
LYS A:409 , THR A:412 , MET A:413 , EDO A:504
BINDING SITE FOR RESIDUE EDO A 508
09
AC9
SOFTWARE
THR A:316 , CYS A:317 , VAL A:353 , THR A:357 , EDO A:503 , HOH A:637
BINDING SITE FOR RESIDUE EDO A 509
10
BC1
SOFTWARE
ARG A:296 , HOH A:632
BINDING SITE FOR RESIDUE DTT A 510
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
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Exons
(0, 0)
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SCOP Domains
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CATH Domains
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Pfam Domains
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Asymmetric Unit 1
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Asym.Unit (71 KB)
Header - Asym.Unit
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Header - Biol.Unit 1
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Header - Biol.Unit 2
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