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4MPY
Biol. Unit 2
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Asym.Unit (1.4 MB)
Biol.Unit 1 (695 KB)
Biol.Unit 2 (700 KB)
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(1)
Title
:
1.85 ANGSTROM RESOLUTION CRYSTAL STRUCTURE OF BETAINE ALDEHYDE DEHYDROGENASE (BETB) FROM STAPHYLOCOCCUS AUREUS (IDP00699) IN COMPLEX WITH NAD+
Authors
:
A. S. Halavaty, G. Minasov, L. Shuvalova, J. Winsor, S. N. Peterson, W. F. Anderson, Center For Structural Genomics Of Infectious D (Csgid)
Date
:
14 Sep 13 (Deposition) - 09 Oct 13 (Release) - 13 May 15 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.85
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: A,B,C,D (1x)
Biol. Unit 2: E,F,G,H (1x)
Keywords
:
Structural Genomics, Nad, Center For Structural Genomics Of Infectious Diseases, Csgid, Niaid, National Institute Of Allergy And Infectious Diseases, Rossmann Fold, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
C. Chen, J. C. Joo, G. Brown, E. Stolnikova, A. S. Halavaty, A. Savchenko, W. F. Anderson, A. F. Yakunin
Structure-Based Mutational Studies Of Substrate Inhibition Of Betaine Aldehyde Dehydrogenase Betb From Staphylococcus Aureus.
Appl. Environ. Microbiol. V. 80 3992 2014
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(2, 8)
Info
All Hetero Components
1a: S,S-(2-HYDROXYETHYL)THIOCYSTEINE (CMEa)
1b: S,S-(2-HYDROXYETHYL)THIOCYSTEINE (CMEb)
1c: S,S-(2-HYDROXYETHYL)THIOCYSTEINE (CMEc)
1d: S,S-(2-HYDROXYETHYL)THIOCYSTEINE (CMEd)
1e: S,S-(2-HYDROXYETHYL)THIOCYSTEINE (CMEe)
1f: S,S-(2-HYDROXYETHYL)THIOCYSTEINE (CMEf)
1g: S,S-(2-HYDROXYETHYL)THIOCYSTEINE (CMEg)
1h: S,S-(2-HYDROXYETHYL)THIOCYSTEINE (CMEh)
3a: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADa)
3b: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADb)
3c: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADc)
3d: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADd)
3e: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADe)
3f: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADf)
3g: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADg)
3h: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADh)
2a: SODIUM ION (NAa)
2b: SODIUM ION (NAb)
2c: SODIUM ION (NAc)
2d: SODIUM ION (NAd)
3e: SODIUM ION (NAe)
3f: SODIUM ION (NAf)
3g: SODIUM ION (NAg)
3h: SODIUM ION (NAh)
3i: SODIUM ION (NAi)
3j: SODIUM ION (NAj)
3k: SODIUM ION (NAk)
3l: SODIUM ION (NAl)
3m: SODIUM ION (NAm)
3n: SODIUM ION (NAn)
3o: SODIUM ION (NAo)
3p: SODIUM ION (NAp)
3q: SODIUM ION (NAq)
3r: SODIUM ION (NAr)
3s: SODIUM ION (NAs)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CME
4
Mod. Amino Acid
S,S-(2-HYDROXYETHYL)THIOCYSTEINE
2
NA
-1
Ligand/Ion
SODIUM ION
3
NAD
4
Ligand/Ion
NICOTINAMIDE-ADENINE-DINUCLEOTIDE
[
close Hetero Component info
]
Sites
(15, 15)
Info
All Sites
01: BC4 (SOFTWARE)
02: BC5 (SOFTWARE)
03: BC6 (SOFTWARE)
04: BC7 (SOFTWARE)
05: BC8 (SOFTWARE)
06: BC9 (SOFTWARE)
07: CC1 (SOFTWARE)
08: CC2 (SOFTWARE)
09: CC3 (SOFTWARE)
10: CC4 (SOFTWARE)
11: CC5 (SOFTWARE)
12: CC6 (SOFTWARE)
13: CC7 (SOFTWARE)
14: CC8 (SOFTWARE)
15: CC9 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
BC4
SOFTWARE
ILE E:153 , THR E:154 , PRO E:155 , TRP E:156 , ASN E:157 , GLN E:162 , LYS E:180 , SER E:182 , GLU E:183 , GLY E:213 , GLY E:217 , ASP E:218 , PHE E:231 , GLY E:233 , GLY E:234 , THR E:237 , HIS E:240 , ILE E:241 , GLU E:255 , GLY E:257 , CME E:289 , HIS E:336 , LYS E:339 , GLU E:390 , PHE E:392 , HOH E:628 , HOH E:678 , HOH E:728 , HOH E:770 , HOH E:792 , HOH E:806 , HOH E:933 , HOH E:965 , HOH E:1079 , HOH E:1214 , HOH E:1225
BINDING SITE FOR RESIDUE NAD E 501
02
BC5
SOFTWARE
NA E:503 , HOH E:925 , HOH E:993 , HOH F:602 , HOH F:605 , HOH F:845 , HOH F:1032
BINDING SITE FOR RESIDUE NA E 502
03
BC6
SOFTWARE
NA E:502 , HOH E:925 , HOH E:1050 , HOH E:1227 , HOH F:602 , HOH F:845 , HOH F:936
BINDING SITE FOR RESIDUE NA E 503
04
BC7
SOFTWARE
LYS E:460 , GLY E:463 , HOH E:619 , VAL F:249 , HOH F:666
BINDING SITE FOR RESIDUE NA E 504
05
BC8
SOFTWARE
ILE E:28 , ILE E:29 , ASP E:97 , ILE E:184 , HOH E:849
BINDING SITE FOR RESIDUE NA E 505
06
BC9
SOFTWARE
ILE F:153 , THR F:154 , PRO F:155 , TRP F:156 , ASN F:157 , GLN F:162 , LYS F:180 , SER F:182 , GLU F:183 , GLY F:213 , GLY F:217 , PHE F:231 , GLY F:233 , GLY F:234 , THR F:237 , HIS F:240 , ILE F:241 , GLU F:255 , GLY F:257 , CME F:289 , HIS F:336 , LYS F:339 , GLU F:390 , PHE F:392 , HOH F:616 , HOH F:671 , HOH F:692 , HOH F:708 , HOH F:729 , HOH F:780 , HOH F:809 , HOH F:859 , HOH F:976 , HOH F:1169 , HOH F:1200 , HOH F:1217 , HOH F:1235
BINDING SITE FOR RESIDUE NAD F 501
07
CC1
SOFTWARE
SER C:342 , HOH C:661 , LEU F:7 , GLN F:9 , HOH F:765
BINDING SITE FOR RESIDUE NA F 502
08
CC2
SOFTWARE
ILE F:28 , ILE F:29 , ASP F:97 , ILE F:184 , HOH F:783
BINDING SITE FOR RESIDUE NA F 503
09
CC3
SOFTWARE
VAL E:249 , HOH E:635 , LYS F:460 , GLY F:463 , HOH F:670
BINDING SITE FOR RESIDUE NA F 504
10
CC4
SOFTWARE
ILE G:153 , THR G:154 , PRO G:155 , TRP G:156 , ASN G:157 , LYS G:180 , PRO G:181 , SER G:182 , GLU G:183 , GLY G:213 , GLY G:217 , PHE G:231 , GLY G:233 , GLY G:234 , THR G:237 , HIS G:240 , GLU G:255 , GLY G:257 , CME G:289 , HIS G:336 , LYS G:339 , GLU G:390 , PHE G:392 , HOH G:692 , HOH G:701 , HOH G:845 , HOH G:957 , HOH G:983 , HOH G:987 , HOH G:991 , HOH G:1148 , HOH G:1152
BINDING SITE FOR RESIDUE NAD G 501
11
CC5
SOFTWARE
LYS G:460 , GLY G:463 , HOH G:702 , VAL H:249 , HOH H:683
BINDING SITE FOR RESIDUE NA G 502
12
CC6
SOFTWARE
ILE G:29 , ASP G:97 , ILE G:184 , HOH G:1062
BINDING SITE FOR RESIDUE NA G 503
13
CC7
SOFTWARE
ILE H:153 , THR H:154 , PRO H:155 , TRP H:156 , ASN H:157 , LYS H:180 , SER H:182 , GLU H:183 , GLY H:213 , GLY H:217 , PHE H:231 , GLY H:233 , GLY H:234 , THR H:237 , HIS H:240 , ILE H:241 , GLU H:255 , GLY H:257 , CME H:289 , HIS H:336 , LYS H:339 , GLU H:390 , PHE H:392 , HOH H:717 , HOH H:771 , HOH H:785 , HOH H:856 , HOH H:887 , HOH H:940 , HOH H:1054 , HOH H:1060 , HOH H:1186
BINDING SITE FOR RESIDUE NAD H 501
14
CC8
SOFTWARE
VAL G:249 , HOH G:684 , LYS H:460 , GLY H:463 , HOH H:699
BINDING SITE FOR RESIDUE NA H 502
15
CC9
SOFTWARE
ILE H:29 , ASP H:97 , ILE H:184 , HOH H:947
BINDING SITE FOR RESIDUE NA H 503
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
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PROSITE Patterns/Profiles
(, 0)
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Exons
(0, 0)
Info
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 8)
Info
All SCOP Domains
1a: SCOP_d4mpya_ (A:)
1b: SCOP_d4mpyb_ (B:)
1c: SCOP_d4mpyc_ (C:)
1d: SCOP_d4mpyd_ (D:)
1e: SCOP_d4mpye_ (E:)
1f: SCOP_d4mpyf_ (F:)
1g: SCOP_d4mpyg_ (G:)
1h: SCOP_d4mpyh_ (H:)
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Protein Domains
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(
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Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
ALDH-like
(168)
Superfamily
:
ALDH-like
(168)
Family
:
automated matches
(88)
Protein domain
:
automated matches
(88)
Staphylococcus aureus [TaxId: 93062]
(4)
1a
d4mpya_
A:
1b
d4mpyb_
B:
1c
d4mpyc_
C:
1d
d4mpyd_
D:
1e
d4mpye_
E:
1f
d4mpyf_
F:
1g
d4mpyg_
G:
1h
d4mpyh_
H:
[
close SCOP info
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CATH Domains
(0, 0 ; only for superseded entry 3FG0: 2,16)
Info
all CATH domains
1a: CATH_3fg0D01 ()
1b: CATH_3fg0F01 ()
1c: CATH_3fg0A01 ()
1d: CATH_3fg0B01 ()
1e: CATH_3fg0H01 ()
1f: CATH_3fg0E01 ()
1g: CATH_3fg0C01 ()
1h: CATH_3fg0G01 ()
2a: CATH_3fg0A02 ()
2b: CATH_3fg0B02 ()
2c: CATH_3fg0C02 ()
2d: CATH_3fg0D02 ()
2e: CATH_3fg0E02 ()
2f: CATH_3fg0F02 ()
2g: CATH_3fg0G02 ()
2h: CATH_3fg0H02 ()
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Sorry, no Info available
[
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Chain H
Asymmetric Unit 1
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