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4MP2
Asym. Unit
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Asym.Unit (140 KB)
Biol.Unit 1 (268 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF PYRUVATE DEHYDROGENASE KINASE ISOFORM 2 IN COMPLEX WITH INHIBITOR PA1
Authors
:
W. J. Gui, S. C. Tso, J. L. Chuang, C. Y. Wu, X. Qi, U. K. Tambar, R. M. Wynn, D
Date
:
12 Sep 13 (Deposition) - 01 Jan 14 (Release) - 05 Mar 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.75
Chains
:
Asym. Unit : A
Biol. Unit 1: A (2x)
Keywords
:
Ghkl Protein Kinase, Pyruvate Dehydrogenase Complex, Mitochondrial Protein Kinases, Impaired Glucose Oxidation, Hepatic Steatosis, Type 2 Diabetes, Cancer, Bergerat Nucleotide-Binding Fold, Protein Kinase, Transferase-Transferase Inhibitor Complex
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Gene Ontology, PubMed, Web (Google)
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Reference
:
S. C. Tso, X. Qi, W. J. Gui, C. Y. Wu, J. L. Chuang, I. Wernstedt-Asterholm, L. K. Morlock, K. R. Owens, P. E. Scherer, N. S. Williams, U. K. Tambar, R. M. Wynn, D. T. Chuang
Structure-Guided Development Of Specific Pyruvate Dehydrogenase Kinase Inhibitors Targeting The Atp-Binding Pocket.
J. Biol. Chem. V. 289 4432 2014
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Hetero Components
(2, 2)
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All Hetero Components
1a: (5-BROMO-2,4-DIHYDROXYPHENYL)(1,3-... (PV1a)
2a: L(+)-TARTARIC ACID (TLAa)
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No.
Name
Count
Type
Full Name
1
PV1
1
Ligand/Ion
(5-BROMO-2,4-DIHYDROXYPHENYL)(1,3-DIHYDRO-2H-ISOINDOL-2-YL)METHANONE
2
TLA
1
Ligand/Ion
L(+)-TARTARIC ACID
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Sites
(2, 2)
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1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ASN A:255 , ALA A:259 , GLU A:262 , ASP A:290 , GLY A:294 , VAL A:295 , LEU A:303 , LEU A:330 , LEU A:346 , THR A:354 , HOH A:604 , HOH A:615 , HOH A:681
BINDING SITE FOR RESIDUE PV1 A 501
2
AC2
SOFTWARE
GLU A:262 , SER A:263 , HIS A:264 , GLU A:265 , SER A:266
BINDING SITE FOR RESIDUE TLA A 502
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SAPs(SNPs)/Variants
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Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 2)
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All SCOP Domains
1a: SCOP_d4mp2a1 (A:12-177)
2a: SCOP_d4mp2a2 (A:182-392)
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Class
:
All alpha proteins
(14657)
Fold
:
Bromodomain-like
(339)
Superfamily
:
alpha-ketoacid dehydrogenase kinase, N-terminal domain
(40)
Family
:
alpha-ketoacid dehydrogenase kinase, N-terminal domain
(20)
Protein domain
:
automated matches
(11)
Human (Homo sapiens) [TaxId: 9606]
(11)
1a
d4mp2a1
A:12-177
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
(364)
Superfamily
:
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
(364)
Family
:
alpha-ketoacid dehydrogenase kinase, C-terminal domain
(31)
Protein domain
:
automated matches
(22)
Human (Homo sapiens) [TaxId: 9606]
(11)
2a
d4mp2a2
A:182-392
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CATH Domains
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Chain A
Asymmetric Unit 1
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