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4MMY
Asym. Unit
Info
Asym.Unit (576 KB)
Biol.Unit 1 (561 KB)
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(1)
Title
:
INTEGRIN ALPHAVBETA3 ECTODOMAIN BOUND TO THE TENTH DOMAIN OF FIBRONECTIN WITH THE IAKGDWND MOTIF
Authors
:
J. Van Agthoven, J. Xiong, M. A. Arnaout
Date
:
09 Sep 13 (Deposition) - 26 Mar 14 (Release) - 30 Apr 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.18
Chains
:
Asym. Unit : A,B,C
Biol. Unit 1: A,B,C (1x)
Keywords
:
Integrin, A Domain, Hybrid Domain, Psi, Egf Repeats, Beta Ta Thigh, Beta Propeller, Rgd Motif, Fibronectin, Vitronectin, Cell Adhesion
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. F. Van Agthoven, J. P. Xiong, J. L. Alonso, X. Rui, B. D. Adair, S. L. Goodman, M. A. Arnaout
Structural Basis For Pure Antagonism Of Integrin Alpha V Beta 3 By A High-Affinity Form Of Fibronectin.
Nat. Struct. Mol. Biol. V. 21 383 2014
[
close entry info
]
Hetero Components
(4, 41)
Info
All Hetero Components
1a: BETA-D-MANNOSE (BMAa)
1b: BETA-D-MANNOSE (BMAb)
1c: BETA-D-MANNOSE (BMAc)
1d: BETA-D-MANNOSE (BMAd)
1e: BETA-D-MANNOSE (BMAe)
1f: BETA-D-MANNOSE (BMAf)
2a: ALPHA-D-MANNOSE (MANa)
2b: ALPHA-D-MANNOSE (MANb)
2c: ALPHA-D-MANNOSE (MANc)
2d: ALPHA-D-MANNOSE (MANd)
3a: MANGANESE (II) ION (MNa)
3b: MANGANESE (II) ION (MNb)
3c: MANGANESE (II) ION (MNc)
3d: MANGANESE (II) ION (MNd)
3e: MANGANESE (II) ION (MNe)
3f: MANGANESE (II) ION (MNf)
3g: MANGANESE (II) ION (MNg)
3h: MANGANESE (II) ION (MNh)
4a: N-ACETYL-D-GLUCOSAMINE (NAGa)
4b: N-ACETYL-D-GLUCOSAMINE (NAGb)
4c: N-ACETYL-D-GLUCOSAMINE (NAGc)
4d: N-ACETYL-D-GLUCOSAMINE (NAGd)
4e: N-ACETYL-D-GLUCOSAMINE (NAGe)
4f: N-ACETYL-D-GLUCOSAMINE (NAGf)
4g: N-ACETYL-D-GLUCOSAMINE (NAGg)
4h: N-ACETYL-D-GLUCOSAMINE (NAGh)
4i: N-ACETYL-D-GLUCOSAMINE (NAGi)
4j: N-ACETYL-D-GLUCOSAMINE (NAGj)
4k: N-ACETYL-D-GLUCOSAMINE (NAGk)
4l: N-ACETYL-D-GLUCOSAMINE (NAGl)
4m: N-ACETYL-D-GLUCOSAMINE (NAGm)
4n: N-ACETYL-D-GLUCOSAMINE (NAGn)
4o: N-ACETYL-D-GLUCOSAMINE (NAGo)
4p: N-ACETYL-D-GLUCOSAMINE (NAGp)
4q: N-ACETYL-D-GLUCOSAMINE (NAGq)
4r: N-ACETYL-D-GLUCOSAMINE (NAGr)
4s: N-ACETYL-D-GLUCOSAMINE (NAGs)
4t: N-ACETYL-D-GLUCOSAMINE (NAGt)
4u: N-ACETYL-D-GLUCOSAMINE (NAGu)
4v: N-ACETYL-D-GLUCOSAMINE (NAGv)
4w: N-ACETYL-D-GLUCOSAMINE (NAGw)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BMA
6
Ligand/Ion
BETA-D-MANNOSE
2
MAN
4
Ligand/Ion
ALPHA-D-MANNOSE
3
MN
8
Ligand/Ion
MANGANESE (II) ION
4
NAG
23
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
[
close Hetero Component info
]
Sites
(22, 22)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASP A:230 , ASN A:232 , ASP A:234 , ILE A:236 , ASP A:238
BINDING SITE FOR RESIDUE MN A 1027
02
AC2
SOFTWARE
ASP A:284 , ASN A:286 , ASP A:288 , TYR A:290 , ASP A:292
BINDING SITE FOR RESIDUE MN A 1028
03
AC3
SOFTWARE
ASP A:349 , ASP A:351 , ASP A:353 , PHE A:355 , ASP A:357
BINDING SITE FOR RESIDUE MN A 1029
04
AC4
SOFTWARE
ASP A:413 , ASP A:415 , ASN A:417 , TYR A:419 , ASP A:421
BINDING SITE FOR RESIDUE MN A 1030
05
AC5
SOFTWARE
CYS A:596 , ASP A:599 , VAL A:601 , GLU A:636
BINDING SITE FOR RESIDUE MN A 1031
06
AC6
SOFTWARE
SER B:121 , SER B:123 , GLU B:220 , HOH B:801 , HOH B:802 , ASP C:1495
BINDING SITE FOR RESIDUE MN B 708
07
AC7
SOFTWARE
SER B:123 , ASP B:126 , ASP B:127 , ASP B:251 , ASN C:1497
BINDING SITE FOR RESIDUE MN B 709
08
AC8
SOFTWARE
ASP B:158 , ASN B:215 , ASP B:217 , PRO B:219 , GLU B:220
BINDING SITE FOR RESIDUE MN B 710
09
AC9
SOFTWARE
GLU A:15 , GLY A:16 , LYS A:42 , ASN A:44 , GLU A:52
BINDING SITE FOR CHAIN A OF SUGAR BOUND TO ASN A 44 RESIDUES 1001 TO 1004
10
BC1
SOFTWARE
ASP A:257 , ASN A:260 , SER A:262
BINDING SITE FOR CHAIN A OF SUGAR BOUND TO ASN A 260 RESIDUES 1005 TO 1006
11
BC2
SOFTWARE
GLN A:214 , PHE A:217 , TYR A:254 , SER A:263 , LEU A:264 , ASN A:266
BINDING SITE FOR CHAIN A OF SUGAR BOUND TO ASN A 266 RESIDUES 1007 TO 1012
12
BC3
SOFTWARE
TYR A:450 , ASN A:458 , THR A:460 , CYS A:472 , ASN B:48
BINDING SITE FOR CHAIN A OF SUGAR BOUND TO ASN A 458 RESIDUES 1013 TO 1016
13
BC4
SOFTWARE
ASN A:524
BINDING SITE FOR MONO-SACCHARIDE NAG A1017 BOUND TO ASN A 524
14
BC5
SOFTWARE
PHE A:558 , ASN A:585
BINDING SITE FOR CHAIN A OF SUGAR BOUND TO ASN A 585 RESIDUES 1018 TO 1019
15
BC6
SOFTWARE
ASN A:674
BINDING SITE FOR MONO-SACCHARIDE NAG A1020 BOUND TO ASN A 674
16
BC7
SOFTWARE
ASN A:821 , GLN A:885
BINDING SITE FOR MONO-SACCHARIDE NAG A1021 BOUND TO ASN A 821
17
BC8
SOFTWARE
ASN A:943
BINDING SITE FOR CHAIN A OF SUGAR BOUND TO ASN A 943 RESIDUES 1022 TO 1023
18
BC9
SOFTWARE
ASP A:751 , ILE A:869 , ASN A:950
BINDING SITE FOR CHAIN A OF SUGAR BOUND TO ASN A 950 RESIDUES 1024 TO 1026
19
CC1
SOFTWARE
LYS B:98 , ASN B:99
BINDING SITE FOR MONO-SACCHARIDE NAG B 701 BOUND TO ASN B 99
20
CC2
SOFTWARE
ARG A:248 , ASN B:320
BINDING SITE FOR MONO-SACCHARIDE NAG B 702 BOUND TO ASN B 320
21
CC3
SOFTWARE
ASN B:371 , SER B:398 , GLU B:400
BINDING SITE FOR CHAIN B OF SUGAR BOUND TO ASN B 371 RESIDUES 703 TO 704
22
CC4
SOFTWARE
ASP A:621 , PRO A:624 , TYR B:531 , TYR B:557 , ASN B:559
BINDING SITE FOR CHAIN B OF SUGAR BOUND TO ASN B 559 RESIDUES 705 TO 707
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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PROSITE Patterns/Profiles
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Info
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Exons
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Info
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
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CATH Domains
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all CATH domains
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Sorry, no Info available
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Pfam Domains
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Asymmetric Unit 1
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select all 'ALA' residues (Alanines) in chain 'A'
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select residue range 5 to 10 in chain 'A'
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Asym.Unit (576 KB)
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