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4MLR
Asym. Unit
Info
Asym.Unit (773 KB)
Biol.Unit 1 (388 KB)
Biol.Unit 2 (385 KB)
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(1)
Title
:
DIHYDRODIPICOLINATE SYNTHASE FROM C. JEJUNI, Y110F MUTATION WITH PYRUVATE AND LYSINE
Authors
:
C. J. T. Conly
Date
:
06 Sep 13 (Deposition) - 14 Jan 15 (Release) - 01 Apr 15 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.20
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: A,B,C,D (1x)
Biol. Unit 2: E,F,G,H (1x)
Keywords
:
Schiff-Base, Aldolase, Tim Barrel, Lyase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
C. J. Conly, Y. V. Skovpen, S. Li, D. R. Palmer, D. A. Sanders
Tyrosine 110 Plays A Critical Role In Regulating The Allosteric Inhibition Of Campylobacter Jejuni Dihydrodipicolinate Synthase By Lysine.
Biochemistry V. 53 7396 2014
[
close entry info
]
Hetero Components
(7, 35)
Info
All Hetero Components
1a: ACETATE ION (ACTa)
1b: ACETATE ION (ACTb)
2a: 1,2-ETHANEDIOL (EDOa)
2b: 1,2-ETHANEDIOL (EDOb)
2c: 1,2-ETHANEDIOL (EDOc)
2d: 1,2-ETHANEDIOL (EDOd)
2e: 1,2-ETHANEDIOL (EDOe)
2f: 1,2-ETHANEDIOL (EDOf)
2g: 1,2-ETHANEDIOL (EDOg)
2h: 1,2-ETHANEDIOL (EDOh)
2i: 1,2-ETHANEDIOL (EDOi)
3a: GLYCEROL (GOLa)
4a: (2S)-2-AMINO-6-[(1-HYDROXY-1-OXO-P... (KPIa)
4b: (2S)-2-AMINO-6-[(1-HYDROXY-1-OXO-P... (KPIb)
4c: (2S)-2-AMINO-6-[(1-HYDROXY-1-OXO-P... (KPIc)
4d: (2S)-2-AMINO-6-[(1-HYDROXY-1-OXO-P... (KPId)
4e: (2S)-2-AMINO-6-[(1-HYDROXY-1-OXO-P... (KPIe)
4f: (2S)-2-AMINO-6-[(1-HYDROXY-1-OXO-P... (KPIf)
4g: (2S)-2-AMINO-6-[(1-HYDROXY-1-OXO-P... (KPIg)
4h: (2S)-2-AMINO-6-[(1-HYDROXY-1-OXO-P... (KPIh)
5a: LYSINE (LYSa)
5b: LYSINE (LYSb)
5c: LYSINE (LYSc)
5d: LYSINE (LYSd)
5e: LYSINE (LYSe)
5f: LYSINE (LYSf)
5g: LYSINE (LYSg)
5h: LYSINE (LYSh)
6a: TETRAETHYLENE GLYCOL (PG4a)
6b: TETRAETHYLENE GLYCOL (PG4b)
7a: TRIETHYLENE GLYCOL (PGEa)
7b: TRIETHYLENE GLYCOL (PGEb)
7c: TRIETHYLENE GLYCOL (PGEc)
7d: TRIETHYLENE GLYCOL (PGEd)
7e: TRIETHYLENE GLYCOL (PGEe)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ACT
2
Ligand/Ion
ACETATE ION
2
EDO
9
Ligand/Ion
1,2-ETHANEDIOL
3
GOL
1
Ligand/Ion
GLYCEROL
4
KPI
8
Mod. Amino Acid
(2S)-2-AMINO-6-[(1-HYDROXY-1-OXO-PROPAN-2-YLIDENE)AMINO]HEXANOIC ACID
5
LYS
8
Mod. Amino Acid
LYSINE
6
PG4
2
Ligand/Ion
TETRAETHYLENE GLYCOL
7
PGE
5
Ligand/Ion
TRIETHYLENE GLYCOL
[
close Hetero Component info
]
Sites
(25, 25)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
SER A:51 , ALA A:52 , LEU A:54 , HIS A:59 , PHE A:110 , LYS A:302 , ASN D:84 , GLU D:88
BINDING SITE FOR RESIDUE LYS A 301
02
AC2
SOFTWARE
ASN A:84 , GLU A:88 , LYS A:301 , SER D:51 , ALA D:52 , LEU D:54 , HIS D:59 , PHE D:110
BINDING SITE FOR RESIDUE LYS A 302
03
AC3
SOFTWARE
TYR A:261
BINDING SITE FOR RESIDUE EDO A 303
04
AC4
SOFTWARE
THR A:149 , ASP A:177
BINDING SITE FOR RESIDUE ACT A 304
05
AC5
SOFTWARE
LYS A:204
BINDING SITE FOR RESIDUE EDO A 305
06
AC6
SOFTWARE
HIS A:223 , PHE A:224 , ASP A:227
BINDING SITE FOR RESIDUE EDO A 306
07
AC7
SOFTWARE
SER B:51 , ALA B:52 , LEU B:54 , HIS B:59 , ASN C:84 , GLU C:88 , LYS C:301
BINDING SITE FOR RESIDUE LYS B 301
08
AC8
SOFTWARE
GLN B:117 , ASP B:150 , THR B:151 , LYS B:154
BINDING SITE FOR RESIDUE PG4 B 302
09
AC9
SOFTWARE
PRO B:183 , MET B:186 , GLY B:202 , LYS B:204
BINDING SITE FOR RESIDUE PGE B 303
10
BC1
SOFTWARE
ASN B:84 , GLU B:88 , LYS B:301 , SER C:51 , ALA C:52 , LEU C:54 , HIS C:59
BINDING SITE FOR RESIDUE LYS C 301
11
BC2
SOFTWARE
GLN C:117 , TYR C:120 , ASP C:150 , THR C:151 , LYS C:154
BINDING SITE FOR RESIDUE PG4 C 302
12
BC3
SOFTWARE
PRO C:183 , MET C:186 , LYS C:204
BINDING SITE FOR RESIDUE PGE C 303
13
BC4
SOFTWARE
PRO C:140
BINDING SITE FOR RESIDUE GOL C 304
14
BC5
SOFTWARE
ARG D:272
BINDING SITE FOR RESIDUE EDO D 301
15
BC6
SOFTWARE
SER E:51 , ALA E:52 , LEU E:54 , HIS E:56 , HIS E:59 , PHE E:110 , HOH E:422 , ASN F:84 , GLU F:88 , LYS F:301
BINDING SITE FOR RESIDUE LYS E 301
16
BC7
SOFTWARE
PRO E:140 , GLY E:144
BINDING SITE FOR RESIDUE PGE E 302
17
BC8
SOFTWARE
ALA E:263 , ILE E:295 , GLY E:297
BINDING SITE FOR RESIDUE EDO E 303
18
BC9
SOFTWARE
TYR E:120 , LYS E:154
BINDING SITE FOR RESIDUE EDO E 304
19
CC1
SOFTWARE
ASN E:84 , GLU E:88 , LYS E:301 , SER F:51 , ALA F:52 , LEU F:54 , HIS F:56 , HIS F:59 , PHE F:110
BINDING SITE FOR RESIDUE LYS F 301
20
CC2
SOFTWARE
GLN F:117 , LYS F:154
BINDING SITE FOR RESIDUE PGE F 302
21
CC3
SOFTWARE
HIS E:56 , GLU E:88 , HIS F:56
BINDING SITE FOR RESIDUE ACT F 303
22
CC4
SOFTWARE
SER G:51 , ALA G:52 , LEU G:54 , HIS G:56 , HIS G:59 , ASN H:84 , GLU H:88 , LYS H:301
BINDING SITE FOR RESIDUE LYS G 301
23
CC5
SOFTWARE
GLU G:287
BINDING SITE FOR RESIDUE EDO G 303
24
CC6
SOFTWARE
ASN G:84 , GLU G:88 , LYS G:301 , SER H:51 , ALA H:52 , LEU H:54 , HIS H:59 , PHE H:110
BINDING SITE FOR RESIDUE LYS H 301
25
CC7
SOFTWARE
GLN H:117 , TYR H:120 , LYS H:154
BINDING SITE FOR RESIDUE PGE H 302
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
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Sorry, no Info available
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
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End label:
Sorry, no Info available
[
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(0, 0)
Info
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Sorry, no Info available
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
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Atom Selection
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Protein
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All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Chain B
Chain C
Chain D
Chain E
Chain F
Chain G
Chain H
Asymmetric Unit 1
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select chains 'A' and 'C'
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select all 'ALA' residues (Alanines) in chain 'A'
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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set fontsize 20
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show SS bonds with a radius of 100 units (=0.4Å)
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Asym.Unit (773 KB)
Header - Asym.Unit
Biol.Unit 1 (388 KB)
Header - Biol.Unit 1
Biol.Unit 2 (385 KB)
Header - Biol.Unit 2
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