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4MLL
Asym. Unit
Info
Asym.Unit (194 KB)
Biol.Unit 1 (50 KB)
Biol.Unit 2 (50 KB)
Biol.Unit 3 (50 KB)
Biol.Unit 4 (50 KB)
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(1)
Title
:
THE 1.4 A STRUCTURE OF THE CLASS D BETA-LACTAMASE OXA-1 K70D COMPLEXED WITH OXACILLIN
Authors
:
C. M. June, B. C. Vallier, R. A. Bonomo, D. A. Leonard, R. A. Powers
Date
:
06 Sep 13 (Deposition) - 09 Oct 13 (Release) - 08 Jan 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.37
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Biol. Unit 4: D (1x)
Keywords
:
Hydrolase, Oxacillinase, Antibiotic Resistance, Hydrolase-Antibiotic Complex
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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Reference
:
C. M. June, B. C. Vallier, R. A. Bonomo, D. A. Leonard, R. A. Powers
Structural Origins Of Oxacillinase Specificity In Class D Beta-Lactamases.
Antimicrob. Agents Chemother. V. 58 333 2014
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Hetero Components
(3, 14)
Info
All Hetero Components
1a: (2R,4S)-5,5-DIMETHYL-2-[(1R)-1-{[(... (1S6a)
1b: (2R,4S)-5,5-DIMETHYL-2-[(1R)-1-{[(... (1S6b)
1c: (2R,4S)-5,5-DIMETHYL-2-[(1R)-1-{[(... (1S6c)
1d: (2R,4S)-5,5-DIMETHYL-2-[(1R)-1-{[(... (1S6d)
2a: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDa)
2b: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDb)
2c: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDc)
3a: PHOSPHATE ION (PO4a)
3b: PHOSPHATE ION (PO4b)
3c: PHOSPHATE ION (PO4c)
3d: PHOSPHATE ION (PO4d)
3e: PHOSPHATE ION (PO4e)
3f: PHOSPHATE ION (PO4f)
3g: PHOSPHATE ION (PO4g)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
1S6
4
Ligand/Ion
(2R,4S)-5,5-DIMETHYL-2-[(1R)-1-{[(5-METHYL-3-PHENYL-1,2-OXAZOL-4-YL)CARBONYL]AMINO}-2-OXOETHYL]-1,3-THIAZOLIDINE-4-CARBOXYLIC ACID
2
MPD
3
Ligand/Ion
(4S)-2-METHYL-2,4-PENTANEDIOL
3
PO4
7
Ligand/Ion
PHOSPHATE ION
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Sites
(14, 14)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASP A:66 , SER A:67 , MET A:99 , TRP A:102 , SER A:115 , VAL A:117 , THR A:213 , GLY A:214 , ALA A:215 , LEU A:255 , SER A:258 , HOH A:458 , HOH A:477 , HOH A:502 , LYS B:236 , SER B:237 , GLY B:238
BINDING SITE FOR RESIDUE 1S6 A 301
02
AC2
SOFTWARE
GLU A:122 , HOH A:620
BINDING SITE FOR RESIDUE PO4 A 302
03
AC3
SOFTWARE
ASN A:193 , GLU A:196
BINDING SITE FOR RESIDUE PO4 A 303
04
AC4
SOFTWARE
ASN A:250 , GLY A:252 , ASN B:193 , GLU B:196
BINDING SITE FOR RESIDUE PO4 A 305
05
AC5
SOFTWARE
ASN A:130 , LYS A:133 , HOH A:632 , PHE C:114 , TYR C:199 , LEU C:200 , HOH C:476 , HOH C:511 , HOH C:624
BINDING SITE FOR RESIDUE MPD A 304
06
AC6
SOFTWARE
LYS A:236 , GLY A:238 , HOH A:505 , ASP B:66 , SER B:67 , MET B:99 , TRP B:102 , SER B:115 , VAL B:117 , GLY B:214 , ALA B:215 , LEU B:255 , SER B:258 , HOH B:414 , HOH B:424 , HOH B:450 , HOH B:452 , HOH B:494 , HOH B:587
BINDING SITE FOR RESIDUE 1S6 B 301
07
AC7
SOFTWARE
GLU B:122 , HOH B:545
BINDING SITE FOR RESIDUE PO4 B 302
08
AC8
SOFTWARE
ASP C:66 , SER C:67 , TRP C:102 , SER C:115 , VAL C:117 , THR C:213 , GLY C:214 , ALA C:215 , SER C:258 , HOH C:438 , HOH C:556 , HOH C:576 , HOH C:641 , LYS D:236 , GLY D:238
BINDING SITE FOR RESIDUE 1S6 C 301
09
AC9
SOFTWARE
ASN C:193 , GLU C:196 , ASN D:250 , LEU D:251 , GLY D:252
BINDING SITE FOR RESIDUE PO4 C 302
10
BC1
SOFTWARE
ILE C:82 , PHE C:90 , HOH D:576
BINDING SITE FOR RESIDUE PO4 C 303
11
BC2
SOFTWARE
LYS C:236 , SER C:237 , GLY C:238 , ASP D:66 , SER D:67 , MET D:99 , TRP D:102 , SER D:115 , VAL D:117 , THR D:213 , GLY D:214 , ALA D:215 , LEU D:255 , SER D:258 , HOH D:415 , HOH D:478 , HOH D:490
BINDING SITE FOR RESIDUE 1S6 D 301
12
BC3
SOFTWARE
GLU D:122 , LYS D:126 , HOH D:532
BINDING SITE FOR RESIDUE PO4 D 302
13
BC4
SOFTWARE
GLN B:113 , TYR B:199 , LEU B:200 , HOH B:500 , HOH B:569 , HOH B:591 , LYS D:133
BINDING SITE FOR RESIDUE MPD D 303
14
BC5
SOFTWARE
LEU C:251 , GLY C:252 , GLU D:192 , ASN D:193 , GLU D:196 , HOH D:619
BINDING SITE FOR RESIDUE MPD D 304
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d4mlla_ (A:)
1b: SCOP_d4mllb_ (B:)
1c: SCOP_d4mllc_ (C:)
1d: SCOP_d4mlld_ (D:)
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Protein Domains
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Organisms
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Class
:
Multi-domain proteins (alpha and beta)
(2421)
Fold
:
beta-lactamase/transpeptidase-like
(515)
Superfamily
:
beta-lactamase/transpeptidase-like
(515)
Family
:
beta-Lactamase/D-ala carboxypeptidase
(411)
Protein domain
:
Class D beta-lactamase
(32)
Escherichia coli, OXA-1 [TaxId: 562]
(3)
1a
d4mlla_
A:
1b
d4mllb_
B:
1c
d4mllc_
C:
1d
d4mlld_
D:
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CATH Domains
(0, 0)
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Pfam Domains
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Asymmetric Unit 1
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Asym.Unit (194 KB)
Header - Asym.Unit
Biol.Unit 1 (50 KB)
Header - Biol.Unit 1
Biol.Unit 2 (50 KB)
Header - Biol.Unit 2
Biol.Unit 3 (50 KB)
Header - Biol.Unit 3
Biol.Unit 4 (50 KB)
Header - Biol.Unit 4
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