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4ML5
Biol. Unit 1
Info
Asym.Unit (85 KB)
Biol.Unit 1, α-C (1.7 MB)
Biol.Unit 1 (1.7 MB)
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(1)
Title
:
ONE MINUTE IRON LOADED FROG M FERRITIN MUTANT H54Q
Authors
:
S. Mangani, F. Di Pisa, C. Pozzi, P. Turano, D. Lalli
Date
:
06 Sep 13 (Deposition) - 10 Sep 14 (Release) - 15 Apr 15 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.22
Chains
:
Asym. Unit : A
Biol. Unit 1: A (24x)
Keywords
:
One Minute Iron Soaking, Four Helix Bundle, Oxidoreductase, Ferroxidase,
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
C. Pozzi, F. Di Pisa, D. Lalli, C. Rosa, E. Theil, P. Turano, S. Mangani
Time-Lapse Anomalous X-Ray Diffraction Shows How Fe(2+) Substrate Ions Move Through Ferritin Protein Nanocages To Oxidoreductase Sites.
Acta Crystallogr. , Sect. D V. 71 941 2015
[
close entry info
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Hetero Components
(1, 96)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
1b: CHLORIDE ION (CLb)
1c: CHLORIDE ION (CLc)
1d: CHLORIDE ION (CLd)
1e: CHLORIDE ION (CLe)
1f: CHLORIDE ION (CLf)
1g: CHLORIDE ION (CLg)
1h: CHLORIDE ION (CLh)
1i: CHLORIDE ION (CLi)
1j: CHLORIDE ION (CLj)
1k: CHLORIDE ION (CLk)
1l: CHLORIDE ION (CLl)
1m: CHLORIDE ION (CLm)
1n: CHLORIDE ION (CLn)
1o: CHLORIDE ION (CLo)
1p: CHLORIDE ION (CLp)
2a: FE (II) ION (FE2a)
2b: FE (II) ION (FE2b)
2c: FE (II) ION (FE2c)
2d: FE (II) ION (FE2d)
3a: MAGNESIUM ION (MGa)
3b: MAGNESIUM ION (MGb)
3c: MAGNESIUM ION (MGc)
3d: MAGNESIUM ION (MGd)
3e: MAGNESIUM ION (MGe)
3f: MAGNESIUM ION (MGf)
3g: MAGNESIUM ION (MGg)
3h: MAGNESIUM ION (MGh)
3i: MAGNESIUM ION (MGi)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CL
-1
Ligand/Ion
CHLORIDE ION
2
FE2
96
Ligand/Ion
FE (II) ION
3
MG
-1
Ligand/Ion
MAGNESIUM ION
[
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Sites
(29, 29)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLU A:23 , GLU A:58 , HIS A:61 , HOH A:663 , HOH A:673
BINDING SITE FOR RESIDUE FE2 A 201
02
AC2
SOFTWARE
GLU A:57 , GLU A:136 , ASP A:140 , ARG A:143 , HOH A:484 , HOH A:669
BINDING SITE FOR RESIDUE FE2 A 202
03
AC3
SOFTWARE
GLU A:53 , GLU A:57 , HOH A:437 , HOH A:484 , HOH A:489 , HOH A:546
BINDING SITE FOR RESIDUE FE2 A 203
04
AC4
SOFTWARE
GLN A:54 , GLU A:103 , ASP A:140 , HOH A:589 , HOH A:649 , HOH A:669
BINDING SITE FOR RESIDUE FE2 A 204
05
AC5
SOFTWARE
SER A:10 , HOH A:362 , HOH A:441 , HOH A:529 , HOH A:530 , HOH A:591
BINDING SITE FOR RESIDUE MG A 205
06
AC6
SOFTWARE
HOH A:312 , HOH A:337
BINDING SITE FOR RESIDUE MG A 206
07
AC7
SOFTWARE
ASP A:127 , HOH A:378 , HOH A:674
BINDING SITE FOR RESIDUE MG A 207
08
AC8
SOFTWARE
HOH A:471 , HOH A:475 , HOH A:590 , HOH A:593 , HOH A:664 , HOH A:676
BINDING SITE FOR RESIDUE MG A 208
09
AC9
SOFTWARE
HOH A:396 , HOH A:456 , HOH A:680 , HOH A:681
BINDING SITE FOR RESIDUE MG A 209
10
BC1
SOFTWARE
HOH A:399 , HOH A:438 , HOH A:460 , HOH A:644 , HOH A:665 , HOH A:679
BINDING SITE FOR RESIDUE MG A 210
11
BC2
SOFTWARE
HOH A:365 , HOH A:447 , HOH A:533 , HOH A:555 , HOH A:561 , HOH A:601
BINDING SITE FOR RESIDUE MG A 211
12
BC3
SOFTWARE
HOH A:490 , HOH A:567 , HOH A:578 , HOH A:587
BINDING SITE FOR RESIDUE MG A 212
13
BC4
SOFTWARE
HOH A:348 , HOH A:429 , HOH A:553 , HOH A:600 , HOH A:623 , HOH A:650
BINDING SITE FOR RESIDUE MG A 213
14
BC5
SOFTWARE
SER A:131 , GLU A:132 , TYR A:133 , GLU A:135 , GLU A:136
BINDING SITE FOR RESIDUE CL A 214
15
BC6
SOFTWARE
ASP A:87 , GLU A:88 , HOH A:519
BINDING SITE FOR RESIDUE CL A 215
16
BC7
SOFTWARE
LYS A:82 , HOH A:307 , HOH A:394
BINDING SITE FOR RESIDUE CL A 216
17
BC8
SOFTWARE
ASN A:7 , GLN A:108 , LYS A:115 , HOH A:371 , HOH A:418
BINDING SITE FOR RESIDUE CL A 217
18
BC9
SOFTWARE
HOH A:373 , HOH A:402 , HOH A:436
BINDING SITE FOR RESIDUE CL A 218
19
CC1
SOFTWARE
GLN A:101 , LEU A:102 , THR A:105 , HOH A:500
BINDING SITE FOR RESIDUE CL A 219
20
CC2
SOFTWARE
HIS A:169
BINDING SITE FOR RESIDUE CL A 220
21
CC3
SOFTWARE
HIS A:169
BINDING SITE FOR RESIDUE CL A 221
22
CC4
SOFTWARE
ARG A:5 , ASN A:7 , TYR A:8 , HOH A:543
BINDING SITE FOR RESIDUE CL A 222
23
CC5
SOFTWARE
ASN A:17 , HOH A:361
BINDING SITE FOR RESIDUE CL A 223
24
CC6
SOFTWARE
SER A:10 , HOH A:544 , HOH A:682
BINDING SITE FOR RESIDUE CL A 224
25
CC7
SOFTWARE
ASN A:150 , LYS A:168 , SER A:170 , CL A:226 , HOH A:313
BINDING SITE FOR RESIDUE CL A 225
26
CC8
SOFTWARE
ASP A:146 , PHE A:147 , ASN A:150 , CL A:225 , HOH A:331 , HOH A:403
BINDING SITE FOR RESIDUE CL A 226
27
CC9
SOFTWARE
GLY A:155 , ASN A:159 , HOH A:656
BINDING SITE FOR RESIDUE CL A 227
28
DC1
SOFTWARE
HOH A:570
BINDING SITE FOR RESIDUE CL A 228
29
DC2
SOFTWARE
LYS A:67 , LYS A:71 , LYS A:139 , HOH A:381
BINDING SITE FOR RESIDUE CL A 229
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
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PROSITE Patterns/Profiles
(, 0)
Info
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Sorry, no Info available
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Exons
(0, 0)
Info
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(0, 0)
Info
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CATH Domains
(0, 0)
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Sorry, no Info available
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Pfam Domains
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Sorry, no Info available
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Atom Selection
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Protein
Nucleic
Backbone
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Hetero
Ligand
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All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Asymmetric Unit 1
Asymmetric Unit 2
Asymmetric Unit 3
Asymmetric Unit 4
Asymmetric Unit 5
Asymmetric Unit 6
Asymmetric Unit 7
Asymmetric Unit 8
Asymmetric Unit 9
Asymmetric Unit 10
Asymmetric Unit 11
Asymmetric Unit 12
Asymmetric Unit 13
Asymmetric Unit 14
Asymmetric Unit 15
Asymmetric Unit 16
Asymmetric Unit 17
Asymmetric Unit 18
Asymmetric Unit 19
Asymmetric Unit 20
Asymmetric Unit 21
Asymmetric Unit 22
Asymmetric Unit 23
Asymmetric Unit 24
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Example Command
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select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
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Asym.Unit (85 KB)
Header - Asym.Unit
Biol.Unit 1 (1.7 MB)
Header - Biol.Unit 1
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