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4MIY
Asym. Unit
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Asym.Unit (250 KB)
Biol.Unit 1 (243 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF MYO-INOSITOL DEHYDROGENASE FROM LACTOBACILLUS CASEI IN COMPLEX WITH NAD AND MYO-INOSITOL
Authors
:
D. Bertwistle, D. A. R. Sanders, D. R. J. Palmer
Date
:
02 Sep 13 (Deposition) - 04 Mar 15 (Release) - 04 Mar 15 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.42
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D (1x)
Keywords
:
Nad, Sugar Alcohol Dehydrogenases, Rossmann Fold, Dehydrogenase, Nad Binding, Myo-Inositol Binding, Dehydrogenate, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
D. Bertwistle, H. Aamudalapalli, D. A. R. Sanders, D. R. J. Palmer
Crystal Structure Of Myo-Inositol Dehydrogenase From Lactobacillus Casei In Complex With Nad And Myo-Inositol
To Be Published
[
close entry info
]
Hetero Components
(4, 24)
Info
All Hetero Components
1a: GLYCEROL (GOLa)
1b: GLYCEROL (GOLb)
1c: GLYCEROL (GOLc)
1d: GLYCEROL (GOLd)
1e: GLYCEROL (GOLe)
1f: GLYCEROL (GOLf)
1g: GLYCEROL (GOLg)
1h: GLYCEROL (GOLh)
1i: GLYCEROL (GOLi)
1j: GLYCEROL (GOLj)
1k: GLYCEROL (GOLk)
1l: GLYCEROL (GOLl)
2a: 1,2,3,4,5,6-HEXAHYDROXY-CYCLOHEXAN... (INSa)
3a: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADa)
3b: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADb)
3c: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADc)
3d: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADd)
4a: SULFATE ION (SO4a)
4b: SULFATE ION (SO4b)
4c: SULFATE ION (SO4c)
4d: SULFATE ION (SO4d)
4e: SULFATE ION (SO4e)
4f: SULFATE ION (SO4f)
4g: SULFATE ION (SO4g)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
GOL
12
Ligand/Ion
GLYCEROL
2
INS
1
Ligand/Ion
1,2,3,4,5,6-HEXAHYDROXY-CYCLOHEXANE
3
NAD
4
Ligand/Ion
NICOTINAMIDE-ADENINE-DINUCLEOTIDE
4
SO4
7
Ligand/Ion
SULFATE ION
[
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]
Sites
(24, 24)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLY A:11 , ALA A:12 , MET A:13 , ASP A:35 , ILE A:36 , VAL A:73 , SER A:74 , PHE A:75 , HIS A:79 , GLU A:96 , LYS A:97 , GLY A:124 , HIS A:176 , TYR A:282 , HOH A:565 , HOH A:653 , HOH A:720 , HOH A:731 , HOH A:746
BINDING SITE FOR RESIDUE NAD A 401
02
AC2
SOFTWARE
ALA A:12 , MET A:13 , ALA A:16 , ILE A:275 , HOH A:579 , HOH A:731
BINDING SITE FOR RESIDUE GOL A 402
03
AC3
SOFTWARE
ARG A:152 , ALA A:153 , SER A:154 , GLU A:241 , HOH A:529 , ARG C:152 , GLU C:241
BINDING SITE FOR RESIDUE GOL A 403
04
AC4
SOFTWARE
HOH A:520 , LEU B:140 , ASP B:141 , GLY B:143 , GLY B:146 , PRO B:148 , HOH B:608 , HOH B:745
BINDING SITE FOR RESIDUE GOL A 404
05
AC5
SOFTWARE
THR A:26 , GLY A:27 , HOH A:577 , HOH A:682 , THR D:26 , GLY D:27
BINDING SITE FOR RESIDUE SO4 A 405
06
AC6
SOFTWARE
ARG A:198 , HOH A:542 , HOH A:708 , HOH A:711 , ALA C:147 , PRO C:148 , LYS C:220
BINDING SITE FOR RESIDUE SO4 A 406
07
AC7
SOFTWARE
GLY B:11 , ALA B:12 , MET B:13 , ASP B:35 , ILE B:36 , VAL B:73 , SER B:74 , PHE B:75 , ALA B:78 , HIS B:79 , GLU B:96 , LYS B:97 , GLY B:124 , MET B:126 , HIS B:176 , TYR B:282 , HOH B:607 , HOH B:615 , HOH B:620 , HOH B:632 , HOH B:638 , HOH B:698 , HOH B:729 , HOH B:753 , HOH B:760
BINDING SITE FOR RESIDUE NAD B 401
08
AC8
SOFTWARE
ALA B:12 , MET B:13 , ALA B:16 , ILE B:275 , HOH B:615 , HOH B:652
BINDING SITE FOR RESIDUE GOL B 402
09
AC9
SOFTWARE
GLN A:266 , THR A:268 , GLN B:266 , THR B:268
BINDING SITE FOR RESIDUE GOL B 403
10
BC1
SOFTWARE
THR B:26 , GLY B:27 , HOH B:743 , THR C:26 , GLY C:27
BINDING SITE FOR RESIDUE SO4 B 404
11
BC2
SOFTWARE
ARG B:198 , HOH B:606 , HOH B:747 , PRO D:148 , LYS D:220
BINDING SITE FOR RESIDUE SO4 B 405
12
BC3
SOFTWARE
GLY C:11 , ALA C:12 , MET C:13 , ASP C:35 , ILE C:36 , VAL C:73 , SER C:74 , PHE C:75 , GLY C:76 , ALA C:78 , HIS C:79 , GLU C:96 , LYS C:97 , GLY C:124 , HIS C:176 , TYR C:282 , HOH C:511 , HOH C:590 , HOH C:606 , HOH C:615 , HOH C:617 , HOH C:626 , HOH C:704 , HOH C:751 , HOH C:754
BINDING SITE FOR RESIDUE NAD C 401
13
BC4
SOFTWARE
ALA C:16 , HOH C:528 , HOH C:581 , HOH C:702 , ILE D:36 , ASP D:37 , HIS D:38 , HOH D:691
BINDING SITE FOR RESIDUE GOL C 402
14
BC5
SOFTWARE
ILE C:259 , GLN C:266 , THR C:268 , HOH C:774 , GLN D:266
BINDING SITE FOR RESIDUE GOL C 403
15
BC6
SOFTWARE
ARG A:152 , GLU A:241 , ARG C:152 , ALA C:153 , SER C:154 , GLU C:241 , HOH C:595
BINDING SITE FOR RESIDUE GOL C 404
16
BC7
SOFTWARE
HOH C:546 , HOH C:558 , HOH C:672 , HOH C:691 , HOH C:701
BINDING SITE FOR RESIDUE GOL C 405
17
BC8
SOFTWARE
ALA A:147 , LYS A:220 , ARG C:198 , HOH C:570
BINDING SITE FOR RESIDUE SO4 C 406
18
BC9
SOFTWARE
PHE C:75 , GLY C:76 , GLY C:77 , HOH C:624
BINDING SITE FOR RESIDUE SO4 C 407
19
CC1
SOFTWARE
GLY D:11 , ALA D:12 , MET D:13 , ASP D:35 , ILE D:36 , VAL D:73 , SER D:74 , PHE D:75 , ALA D:78 , HIS D:79 , GLU D:96 , LYS D:97 , MET D:126 , ASP D:172 , HIS D:176 , TRP D:274 , TYR D:282 , INS D:402 , HOH D:501 , HOH D:580 , HOH D:608 , HOH D:619 , HOH D:644 , HOH D:651 , HOH D:671 , HOH D:707 , HOH D:738 , HOH D:744 , HOH D:758 , HOH D:762
BINDING SITE FOR RESIDUE NAD D 401
20
CC2
SOFTWARE
LYS D:97 , HIS D:155 , ASN D:157 , ASP D:172 , THR D:173 , HIS D:176 , TYR D:236 , NAD D:401 , HOH D:517 , HOH D:549 , HOH D:651
BINDING SITE FOR RESIDUE INS D 402
21
CC3
SOFTWARE
ARG B:152 , GLU B:241 , ARG D:152 , ALA D:153 , SER D:154 , GLU D:241 , HOH D:532
BINDING SITE FOR RESIDUE GOL D 403
22
CC4
SOFTWARE
TYR D:129 , ARG D:134 , GLU D:288 , SO4 D:406 , HOH D:694 , HOH D:789 , HOH D:805
BINDING SITE FOR RESIDUE GOL D 404
23
CC5
SOFTWARE
ARG C:46 , SER D:162 , ASN D:163 , TYR D:164 , ASN D:205 , GLU D:206 , HOH D:535 , HOH D:734
BINDING SITE FOR RESIDUE GOL D 405
24
CC6
SOFTWARE
ARG D:134 , TRP D:183 , GOL D:404
BINDING SITE FOR RESIDUE SO4 D 406
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
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CATH Domains
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Pfam Domains
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