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Biol. Unit 2
Info
Asym.Unit (135 KB)
Biol.Unit 1 (65 KB)
Biol.Unit 2 (65 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THIT WITH SMALL MOLECULE BAT-25
Authors
:
L. J. Y. M. Swier, A. Guskov, D. J. Slotboom
Date
:
30 Aug 13 (Deposition) - 03 Sep 14 (Release) - 03 Sep 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.50
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
S-Component, Ecf Transporter, Abc Transporter, Substrate Binding Domain For Thiamin, Transport Protein, Thiamine Binding Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
L. J. Y. M. Swier, L. Gomez, A. Guskov, A. K. H. Hirsch, D. J. Slotboom
Crystal Structure Of Thit With Small Molecules Modulators
To Be Published
[
close entry info
]
Hetero Components
(6, 20)
Info
All Hetero Components
1a: 2-{4-[(4-AMINO-2-METHYLPYRIMIDIN-5... (0YNa)
1b: 2-{4-[(4-AMINO-2-METHYLPYRIMIDIN-5... (0YNb)
2a: PENTAETHYLENE GLYCOL (1PEa)
2b: PENTAETHYLENE GLYCOL (1PEb)
3a: B-NONYLGLUCOSIDE (BNGa)
3b: B-NONYLGLUCOSIDE (BNGb)
3c: B-NONYLGLUCOSIDE (BNGc)
4a: HEXAETHYLENE GLYCOL (P6Ga)
4b: HEXAETHYLENE GLYCOL (P6Gb)
5a: 2-{2-[2-(2-{2-[2-(2-ETHOXY-ETHOXY)... (PE4a)
6a: DI(HYDROXYETHYL)ETHER (PEGa)
6b: DI(HYDROXYETHYL)ETHER (PEGb)
6c: DI(HYDROXYETHYL)ETHER (PEGc)
6d: DI(HYDROXYETHYL)ETHER (PEGd)
6e: DI(HYDROXYETHYL)ETHER (PEGe)
6f: DI(HYDROXYETHYL)ETHER (PEGf)
6g: DI(HYDROXYETHYL)ETHER (PEGg)
6h: DI(HYDROXYETHYL)ETHER (PEGh)
6i: DI(HYDROXYETHYL)ETHER (PEGi)
6j: DI(HYDROXYETHYL)ETHER (PEGj)
6k: DI(HYDROXYETHYL)ETHER (PEGk)
6l: DI(HYDROXYETHYL)ETHER (PEGl)
6m: DI(HYDROXYETHYL)ETHER (PEGm)
6n: DI(HYDROXYETHYL)ETHER (PEGn)
6o: DI(HYDROXYETHYL)ETHER (PEGo)
6p: DI(HYDROXYETHYL)ETHER (PEGp)
7a: 2-(2-METHOXYETHOXY)ETHANOL (PG0a)
7b: 2-(2-METHOXYETHOXY)ETHANOL (PG0b)
7c: 2-(2-METHOXYETHOXY)ETHANOL (PG0c)
7d: 2-(2-METHOXYETHOXY)ETHANOL (PG0d)
7e: 2-(2-METHOXYETHOXY)ETHANOL (PG0e)
8a: TETRAETHYLENE GLYCOL (PG4a)
8b: TETRAETHYLENE GLYCOL (PG4b)
8c: TETRAETHYLENE GLYCOL (PG4c)
8d: TETRAETHYLENE GLYCOL (PG4d)
8e: TETRAETHYLENE GLYCOL (PG4e)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
0YN
1
Ligand/Ion
2-{4-[(4-AMINO-2-METHYLPYRIMIDIN-5-YL)METHYL]-3-METHYLTHIOPHEN-2-YL}ETHANOL
2
1PE
1
Ligand/Ion
PENTAETHYLENE GLYCOL
3
BNG
2
Ligand/Ion
B-NONYLGLUCOSIDE
4
P6G
-1
Ligand/Ion
HEXAETHYLENE GLYCOL
5
PE4
-1
Ligand/Ion
2-{2-[2-(2-{2-[2-(2-ETHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHOXY]-ETHOXY}-ETHANOL
6
PEG
10
Ligand/Ion
DI(HYDROXYETHYL)ETHER
7
PG0
4
Ligand/Ion
2-(2-METHOXYETHOXY)ETHANOL
8
PG4
2
Ligand/Ion
TETRAETHYLENE GLYCOL
[
close Hetero Component info
]
Sites
(22, 22)
Info
All Sites
01: AC2 (SOFTWARE)
02: AC3 (SOFTWARE)
03: AC4 (SOFTWARE)
04: AC5 (SOFTWARE)
05: AC6 (SOFTWARE)
06: BC2 (SOFTWARE)
07: BC8 (SOFTWARE)
08: BC9 (SOFTWARE)
09: CC1 (SOFTWARE)
10: CC2 (SOFTWARE)
11: CC3 (SOFTWARE)
12: CC5 (SOFTWARE)
13: CC6 (SOFTWARE)
14: CC7 (SOFTWARE)
15: CC9 (SOFTWARE)
16: DC1 (SOFTWARE)
17: DC2 (SOFTWARE)
18: DC3 (SOFTWARE)
19: DC4 (SOFTWARE)
20: DC5 (SOFTWARE)
21: DC6 (SOFTWARE)
22: DC7 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC2
SOFTWARE
ILE A:153 , LEU B:112 , BNG B:202 , PEG B:206
BINDING SITE FOR RESIDUE BNG A 202
02
AC3
SOFTWARE
ILE A:94 , LEU A:97 , PHE A:98 , VAL A:116 , LEU A:119 , PHE A:123 , 1PE B:204
BINDING SITE FOR RESIDUE P6G A 203
03
AC4
SOFTWARE
LEU A:148 , GLY A:152 , ILE A:153 , ILE A:156 , PEG B:209 , PG4 B:220
BINDING SITE FOR RESIDUE P6G A 204
04
AC5
SOFTWARE
PRO A:28 , THR A:30 , PG4 A:216 , PEG B:210
BINDING SITE FOR RESIDUE 1PE A 205
05
AC6
SOFTWARE
TYR A:122 , LEU A:148 , ASN A:151 , GLY A:152 , PEG B:209
BINDING SITE FOR RESIDUE PEG A 206
06
BC2
SOFTWARE
LEU A:157 , ILE A:160 , PG4 A:216 , PEG B:206 , PEG B:210
BINDING SITE FOR RESIDUE PEG A 211
07
BC8
SOFTWARE
TRP B:34 , GLU B:38 , GLU B:84 , TYR B:85 , HIS B:125 , GLY B:129 , TRP B:133 , TYR B:146 , ASN B:151 , HOH B:302 , HOH B:303 , HOH B:307
BINDING SITE FOR RESIDUE 0YN B 201
08
BC9
SOFTWARE
BNG A:202 , LEU B:97 , PHE B:98 , ARG B:99 , PRO B:109
BINDING SITE FOR RESIDUE BNG B 202
09
CC1
SOFTWARE
ALA B:15
BINDING SITE FOR RESIDUE BNG B 203
10
CC2
SOFTWARE
LEU A:119 , P6G A:203 , TRP B:141 , ALA B:145
BINDING SITE FOR RESIDUE 1PE B 204
11
CC3
SOFTWARE
ILE B:75 , LEU B:78 , LEU B:86 , PG4 B:219
BINDING SITE FOR RESIDUE PEG B 205
12
CC5
SOFTWARE
ALA A:108 , TYR B:32 , TRP B:138
BINDING SITE FOR RESIDUE PEG B 207
13
CC6
SOFTWARE
PG4 B:219
BINDING SITE FOR RESIDUE PEG B 208
14
CC7
SOFTWARE
P6G A:204 , PEG A:206 , PG4 B:220
BINDING SITE FOR RESIDUE PEG B 209
15
CC9
SOFTWARE
ILE B:39 , ILE B:42
BINDING SITE FOR RESIDUE PEG B 211
16
DC1
SOFTWARE
LEU B:157 , ILE B:160
BINDING SITE FOR RESIDUE PEG B 212
17
DC2
SOFTWARE
ARG B:99 , PEG B:214
BINDING SITE FOR RESIDUE PEG B 213
18
DC3
SOFTWARE
LEU B:11 , PEG B:213
BINDING SITE FOR RESIDUE PEG B 214
19
DC4
SOFTWARE
VAL B:87 , SER B:91
BINDING SITE FOR RESIDUE PG0 B 215
20
DC5
SOFTWARE
ASN B:29 , THR B:30 , GLY B:33 , TRP B:34 , ILE B:36
BINDING SITE FOR RESIDUE PG0 B 216
21
DC6
SOFTWARE
MET B:68 , ILE B:69 , PEG B:205 , PEG B:208
BINDING SITE FOR RESIDUE PG4 B 219
22
DC7
SOFTWARE
P6G A:204 , LEU B:119 , GLY B:152 , GLY B:155 , PEG B:209
BINDING SITE FOR RESIDUE PG4 B 220
[
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]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
View:
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Sorry, no Info available
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PROSITE Patterns/Profiles
(, 0)
Info
All PROSITE Patterns/Profiles
;
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End label:
Sorry, no Info available
[
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Exons
(0, 0)
Info
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(0, 0)
Info
All SCOP Domains
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Sorry, no Info available
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
[
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
[
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Chain B
Asymmetric Unit 1
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select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
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select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
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Show PDB file:
Asym.Unit (135 KB)
Header - Asym.Unit
Biol.Unit 1 (65 KB)
Header - Biol.Unit 1
Biol.Unit 2 (65 KB)
Header - Biol.Unit 2
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