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4MES
Biol. Unit 2
Info
Asym.Unit (144 KB)
Biol.Unit 1 (68 KB)
Biol.Unit 2 (69 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THIT COMPLEXED WITH LMG116
Authors
:
L. J. Y. M. Swier, A. Guskov, D. J. Slotboom
Date
:
27 Aug 13 (Deposition) - 27 Aug 14 (Release) - 27 Aug 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.00
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
S-Component, Ecf Transporter, Abc Transporter, Thiamine Binding Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
L. J. Y. M. Swier, L. Gomez, A. Guskov, A. K. H. Hirsch, D. J. Slotboom
Crystal Structures Of Thit With Small Molecule Modulators
To Be Published
[
close entry info
]
Hetero Components
(7, 26)
Info
All Hetero Components
1a: PENTAETHYLENE GLYCOL (1PEa)
2a: 2-{3-[(4-AMINO-2-METHYLPYRIMIDIN-5... (26Ga)
2b: 2-{3-[(4-AMINO-2-METHYLPYRIMIDIN-5... (26Gb)
3a: B-NONYLGLUCOSIDE (BNGa)
3b: B-NONYLGLUCOSIDE (BNGb)
3c: B-NONYLGLUCOSIDE (BNGc)
3d: B-NONYLGLUCOSIDE (BNGd)
3e: B-NONYLGLUCOSIDE (BNGe)
3f: B-NONYLGLUCOSIDE (BNGf)
3g: B-NONYLGLUCOSIDE (BNGg)
4a: HEXAETHYLENE GLYCOL (P6Ga)
4b: HEXAETHYLENE GLYCOL (P6Gb)
4c: HEXAETHYLENE GLYCOL (P6Gc)
4d: HEXAETHYLENE GLYCOL (P6Gd)
4e: HEXAETHYLENE GLYCOL (P6Ge)
4f: HEXAETHYLENE GLYCOL (P6Gf)
4g: HEXAETHYLENE GLYCOL (P6Gg)
5a: DI(HYDROXYETHYL)ETHER (PEGa)
5b: DI(HYDROXYETHYL)ETHER (PEGb)
5c: DI(HYDROXYETHYL)ETHER (PEGc)
5d: DI(HYDROXYETHYL)ETHER (PEGd)
5e: DI(HYDROXYETHYL)ETHER (PEGe)
5f: DI(HYDROXYETHYL)ETHER (PEGf)
5g: DI(HYDROXYETHYL)ETHER (PEGg)
5h: DI(HYDROXYETHYL)ETHER (PEGh)
5i: DI(HYDROXYETHYL)ETHER (PEGi)
5j: DI(HYDROXYETHYL)ETHER (PEGj)
5k: DI(HYDROXYETHYL)ETHER (PEGk)
5l: DI(HYDROXYETHYL)ETHER (PEGl)
5m: DI(HYDROXYETHYL)ETHER (PEGm)
5n: DI(HYDROXYETHYL)ETHER (PEGn)
5o: DI(HYDROXYETHYL)ETHER (PEGo)
5p: DI(HYDROXYETHYL)ETHER (PEGp)
5q: DI(HYDROXYETHYL)ETHER (PEGq)
6a: 2-(2-METHOXYETHOXY)ETHANOL (PG0a)
6b: 2-(2-METHOXYETHOXY)ETHANOL (PG0b)
7a: TETRAETHYLENE GLYCOL (PG4a)
7b: TETRAETHYLENE GLYCOL (PG4b)
7c: TETRAETHYLENE GLYCOL (PG4c)
7d: TETRAETHYLENE GLYCOL (PG4d)
7e: TETRAETHYLENE GLYCOL (PG4e)
7f: TETRAETHYLENE GLYCOL (PG4f)
7g: TETRAETHYLENE GLYCOL (PG4g)
7h: TETRAETHYLENE GLYCOL (PG4h)
7i: TETRAETHYLENE GLYCOL (PG4i)
7j: TETRAETHYLENE GLYCOL (PG4j)
7k: TETRAETHYLENE GLYCOL (PG4k)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
1PE
1
Ligand/Ion
PENTAETHYLENE GLYCOL
2
26G
1
Ligand/Ion
2-{3-[(4-AMINO-2-METHYLPYRIMIDIN-5-YL)METHYL]PHENYL}ETHANOL
3
BNG
5
Ligand/Ion
B-NONYLGLUCOSIDE
4
P6G
3
Ligand/Ion
HEXAETHYLENE GLYCOL
5
PEG
12
Ligand/Ion
DI(HYDROXYETHYL)ETHER
6
PG0
1
Ligand/Ion
2-(2-METHOXYETHOXY)ETHANOL
7
PG4
3
Ligand/Ion
TETRAETHYLENE GLYCOL
[
close Hetero Component info
]
Sites
(33, 33)
Info
All Sites
01: AC2 (SOFTWARE)
02: AC4 (SOFTWARE)
03: AC6 (SOFTWARE)
04: BC4 (SOFTWARE)
05: BC5 (SOFTWARE)
06: BC6 (SOFTWARE)
07: CC3 (SOFTWARE)
08: CC4 (SOFTWARE)
09: CC5 (SOFTWARE)
10: CC6 (SOFTWARE)
11: CC7 (SOFTWARE)
12: CC8 (SOFTWARE)
13: CC9 (SOFTWARE)
14: DC1 (SOFTWARE)
15: DC2 (SOFTWARE)
16: DC3 (SOFTWARE)
17: DC4 (SOFTWARE)
18: DC5 (SOFTWARE)
19: DC6 (SOFTWARE)
20: DC7 (SOFTWARE)
21: DC8 (SOFTWARE)
22: DC9 (SOFTWARE)
23: EC1 (SOFTWARE)
24: EC2 (SOFTWARE)
25: EC3 (SOFTWARE)
26: EC4 (SOFTWARE)
27: EC5 (SOFTWARE)
28: EC6 (SOFTWARE)
29: EC7 (SOFTWARE)
30: EC8 (SOFTWARE)
31: EC9 (SOFTWARE)
32: FC1 (SOFTWARE)
33: FC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC2
SOFTWARE
ILE A:94 , LEU A:97 , PHE A:98 , VAL A:116 , HOH A:345 , BNG B:201 , BNG B:202
BINDING SITE FOR RESIDUE BNG A 202
02
AC4
SOFTWARE
VAL A:37 , LEU A:157 , ALA A:161 , PG4 A:208 , LEU B:111
BINDING SITE FOR RESIDUE PG4 A 204
03
AC6
SOFTWARE
VAL A:164 , ILE A:167 , ILE A:168 , LYS A:172 , VAL B:164
BINDING SITE FOR RESIDUE PG4 A 206
04
BC4
SOFTWARE
LEU A:105 , LYS A:106 , LEU A:107 , ALA A:108 , LYS A:171 , TYR B:32
BINDING SITE FOR RESIDUE PEG A 213
05
BC5
SOFTWARE
TRP A:138 , P6G A:221 , PEG B:212
BINDING SITE FOR RESIDUE PEG A 214
06
BC6
SOFTWARE
VAL A:31 , ILE A:153 , LEU B:112 , BNG B:205 , PEG B:212
BINDING SITE FOR RESIDUE PEG A 215
07
CC3
SOFTWARE
PHE A:115 , TRP A:141 , ALA A:145 , LEU A:148 , ILE A:156 , PG4 A:205 , PEG A:214 , PEG B:217 , P6G B:225
BINDING SITE FOR RESIDUE P6G A 221
08
CC4
SOFTWARE
ALA A:108 , LEU A:112 , BNG A:202 , VAL B:31 , TYR B:32 , ILE B:35 , TRP B:138 , HOH B:331 , HOH B:341 , HOH B:379
BINDING SITE FOR RESIDUE BNG B 201
09
CC5
SOFTWARE
LEU A:119 , BNG A:202 , LYS B:139 , GLY B:140 , TRP B:141 , ALA B:145 , PEG B:215 , HOH B:341 , HOH B:375 , HOH B:380
BINDING SITE FOR RESIDUE BNG B 202
10
CC6
SOFTWARE
PHE B:22 , ILE B:69 , 1PE B:222 , HOH B:376 , HOH B:377
BINDING SITE FOR RESIDUE BNG B 203
11
CC7
SOFTWARE
LEU B:97 , PHE B:98 , PRO B:109 , VAL B:116 , BNG B:205 , HOH B:323 , HOH B:378
BINDING SITE FOR RESIDUE BNG B 204
12
CC8
SOFTWARE
PEG A:215 , PHE B:98 , LEU B:112 , BNG B:204 , HOH B:388 , HOH B:389
BINDING SITE FOR RESIDUE BNG B 205
13
CC9
SOFTWARE
GLU B:38 , GLU B:84 , TYR B:85 , HIS B:125 , GLY B:129 , TRP B:133 , TYR B:146 , ASN B:151 , PG4 B:209 , HOH B:307 , HOH B:308 , HOH B:335
BINDING SITE FOR RESIDUE 26G B 206
14
DC1
SOFTWARE
THR B:54 , LEU B:57
BINDING SITE FOR RESIDUE PG4 B 207
15
DC2
SOFTWARE
PHE B:163 , ILE B:167 , LYS B:171
BINDING SITE FOR RESIDUE PG4 B 208
16
DC3
SOFTWARE
THR B:30 , GLY B:33 , TRP B:34 , ILE B:36 , TYR B:74 , 26G B:206 , PEG B:211 , HOH B:352
BINDING SITE FOR RESIDUE PG4 B 209
17
DC4
SOFTWARE
LEU B:78 , PHE B:82 , LEU B:86 , 1PE B:222
BINDING SITE FOR RESIDUE PEG B 210
18
DC5
SOFTWARE
TYR B:74 , LEU B:76 , TYR B:136 , PG4 B:209
BINDING SITE FOR RESIDUE PEG B 211
19
DC6
SOFTWARE
PEG A:214 , PEG A:215 , LEU B:112 , VAL B:116
BINDING SITE FOR RESIDUE PEG B 212
20
DC7
SOFTWARE
P6G B:226
BINDING SITE FOR RESIDUE PEG B 213
21
DC8
SOFTWARE
ASN B:29 , P6G B:226
BINDING SITE FOR RESIDUE PEG B 214
22
DC9
SOFTWARE
BNG B:202
BINDING SITE FOR RESIDUE PEG B 215
23
EC1
SOFTWARE
PHE B:173 , PRO B:174 , LYS B:175 , PEG B:218
BINDING SITE FOR RESIDUE PEG B 216
24
EC2
SOFTWARE
P6G A:221 , LEU B:119 , P6G B:225
BINDING SITE FOR RESIDUE PEG B 217
25
EC3
SOFTWARE
PHE B:173 , PEG B:216 , P6G B:226
BINDING SITE FOR RESIDUE PEG B 218
26
EC4
SOFTWARE
ILE B:131 , PEG B:220
BINDING SITE FOR RESIDUE PEG B 219
27
EC5
SOFTWARE
ILE B:130 , PEG B:219 , HOH B:337
BINDING SITE FOR RESIDUE PEG B 220
28
EC6
SOFTWARE
LEU B:11 , THR B:54
BINDING SITE FOR RESIDUE PEG B 221
29
EC7
SOFTWARE
MET B:68 , ILE B:69 , THR B:70 , BNG B:203 , PEG B:210
BINDING SITE FOR RESIDUE 1PE B 222
30
EC8
SOFTWARE
ILE B:23 , LEU B:26
BINDING SITE FOR RESIDUE PG0 B 223
31
EC9
SOFTWARE
VAL B:87 , VAL B:90
BINDING SITE FOR RESIDUE P6G B 224
32
FC1
SOFTWARE
LEU A:148 , P6G A:221 , LEU B:119 , PHE B:123 , PHE B:126 , LEU B:148 , PEG B:217
BINDING SITE FOR RESIDUE P6G B 225
33
FC2
SOFTWARE
ILE B:24 , LEU B:46 , PHE B:169 , PEG B:213 , PEG B:214 , PEG B:218
BINDING SITE FOR RESIDUE P6G B 226
[
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]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
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PROSITE Patterns/Profiles
(, 0)
Info
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;
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[
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Exons
(0, 0)
Info
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(0, 0)
Info
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Sorry, no Info available
[
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CATH Domains
(0, 0)
Info
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Sorry, no Info available
[
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Pfam Domains
(0, 0)
Info
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Sorry, no Info available
[
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Chain B
Asymmetric Unit 1
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