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4ME4
Asym. Unit
Info
Asym.Unit (260 KB)
Biol.Unit 1 (252 KB)
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(1)
Title
:
METALLO-ENZYME FROM P. MARINA
Authors
:
D. Bellini, M. A. Walsh, Oxford Protein Production Facility (Oppf
Date
:
24 Aug 13 (Deposition) - 19 Feb 14 (Release) - 19 Feb 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.55
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Structural Genomics, Oxford Protein Production Facility, Oppf, Phosphohydrolase, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
D. Bellini, D. L. Caly, Y. Mccarthy, M. Bumann, S. Q. An, J. M. Dow, R. P. Ryan, M. A. Walsh
Crystal Structure Of An Hd-Gyp Domain Cyclic-Di-Gmp Phosphodiesterase Reveals An Enzyme With A Novel Trinuclear Catalytic Iron Centre.
Mol. Microbiol. V. 91 26 2014
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Hetero Components
(4, 14)
Info
All Hetero Components
1a: GUANOSINE-5'-MONOPHOSPHATE (5GPa)
2a: FE (III) ION (FEa)
2b: FE (III) ION (FEb)
2c: FE (III) ION (FEc)
2d: FE (III) ION (FEd)
2e: FE (III) ION (FEe)
2f: FE (III) ION (FEf)
3a: IMIDAZOLE (IMDa)
3b: IMIDAZOLE (IMDb)
4a: SUCCINIC ACID (SINa)
4b: SUCCINIC ACID (SINb)
4c: SUCCINIC ACID (SINc)
4d: SUCCINIC ACID (SINd)
4e: SUCCINIC ACID (SINe)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
5GP
1
Ligand/Ion
GUANOSINE-5'-MONOPHOSPHATE
2
FE
6
Ligand/Ion
FE (III) ION
3
IMD
2
Ligand/Ion
IMIDAZOLE
4
SIN
5
Ligand/Ion
SUCCINIC ACID
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Sites
(14, 14)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASP A:222 , HIS A:250 , HIS A:276 , HIS A:277 , FE A:402 , SIN A:404 , HOH A:501
BINDING SITE FOR RESIDUE FE A 401
02
AC2
SOFTWARE
GLU A:185 , ASP A:222 , LYS A:225 , FE A:401 , FE A:403 , SIN A:404 , SIN A:405 , IMD A:407 , HOH A:501 , HOH A:502
BINDING SITE FOR RESIDUE FE A 402
03
AC3
SOFTWARE
GLU A:185 , HIS A:189 , ASP A:305 , FE A:402 , SIN A:405 , IMD A:407 , HOH A:502 , HOH A:513
BINDING SITE FOR RESIDUE FE A 403
04
AC4
SOFTWARE
GLU A:185 , ASP A:222 , LYS A:225 , LYS A:238 , TRP A:244 , MET A:247 , HIS A:250 , HIS A:277 , TYR A:285 , FE A:401 , FE A:402 , SIN A:405 , HOH A:501 , HOH A:510 , HOH A:562
BINDING SITE FOR RESIDUE SIN A 404
05
AC5
SOFTWARE
GLU A:185 , HIS A:189 , GLY A:237 , LYS A:238 , ASP A:305 , ALA A:309 , FE A:402 , FE A:403 , SIN A:404 , HOH A:502 , HOH A:503 , HOH A:510 , HOH A:513 , HOH A:546 , HOH A:554 , HOH A:562
BINDING SITE FOR RESIDUE SIN A 405
06
AC6
SOFTWARE
GLU A:275 , GLU A:278 , TRP A:280 , ILE A:294 , GLY A:298 , ARG A:299 , SER A:302 , HIS A:336 , PHE A:337 , ASP A:338
BINDING SITE FOR RESIDUE SIN A 406
07
AC7
SOFTWARE
GLU A:185 , HIS A:189 , ILE A:190 , HIS A:221 , ASP A:222 , ASP A:305 , FE A:402 , FE A:403 , HOH A:502 , HOH A:506
BINDING SITE FOR RESIDUE IMD A 407
08
AC8
SOFTWARE
ASP B:222 , HIS B:250 , HIS B:276 , HIS B:277 , FE B:402 , SIN B:405 , HOH B:501
BINDING SITE FOR RESIDUE FE B 401
09
AC9
SOFTWARE
GLU B:185 , ASP B:222 , LYS B:225 , FE B:401 , 5GP B:404 , SIN B:405 , IMD B:407 , HOH B:501 , HOH B:502
BINDING SITE FOR RESIDUE FE B 402
10
BC1
SOFTWARE
GLU B:185 , HIS B:189 , HIS B:221 , ASP B:305 , 5GP B:404 , IMD B:407 , HOH B:502
BINDING SITE FOR RESIDUE FE B 403
11
BC2
SOFTWARE
GLU B:185 , HIS B:189 , HIS B:277 , ASP B:305 , ALA B:309 , ARG B:314 , FE B:402 , FE B:403 , SIN B:405 , IMD B:407 , HOH B:504 , HOH B:509
BINDING SITE FOR RESIDUE 5GP B 404
12
BC3
SOFTWARE
ASP B:222 , LYS B:225 , HIS B:250 , HIS B:277 , TYR B:285 , FE B:401 , FE B:402 , 5GP B:404 , HOH B:501 , HOH B:506
BINDING SITE FOR RESIDUE SIN B 405
13
BC4
SOFTWARE
GLU B:275 , GLU B:278 , ILE B:294 , GLY B:298 , ARG B:299 , SER B:302 , ILE B:303 , HIS B:336 , PHE B:337 , ASP B:338
BINDING SITE FOR RESIDUE SIN B 406
14
BC5
SOFTWARE
GLU B:185 , HIS B:189 , ILE B:190 , HIS B:221 , ASP B:222 , ASP B:305 , FE B:402 , FE B:403 , 5GP B:404 , HOH B:502 , HOH B:507
BINDING SITE FOR RESIDUE IMD B 407
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
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CATH Domains
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Pfam Domains
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Asymmetric Unit 1
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Asym.Unit (260 KB)
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