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Asym. Unit
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Asym.Unit (259 KB)
Biol.Unit 1 (252 KB)
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(1)
Title
:
METALLO-ENZYME FROM P. MARINA
Authors
:
D. Bellini, M. A. Walsh, Oxford Protein Production Facility (Oppf
Date
:
23 Aug 13 (Deposition) - 19 Feb 14 (Release) - 19 Feb 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.68
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Structural Genomics, Oxford Protein Production Facility, Oppf, Phosphohydrolase, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
D. Bellini, D. L. Caly, Y. Mccarthy, M. Bumann, S. Q. An, J. M. Dow, R. P. Ryan, M. A. Walsh
Crystal Structure Of An Hd-Gyp Domain Cyclic-Di-Gmp Phosphodiesterase Reveals An Enzyme With A Novel Trinuclear Catalytic Iron Centre.
Mol. Microbiol. V. 91 26 2014
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Hetero Components
(3, 10)
Info
All Hetero Components
1a: 9,9'-[(2R,3R,3AS,5S,7AR,9R,10R,10A... (C2Ea)
2a: FE (III) ION (FEa)
2b: FE (III) ION (FEb)
2c: FE (III) ION (FEc)
2d: FE (III) ION (FEd)
3a: SUCCINIC ACID (SINa)
3b: SUCCINIC ACID (SINb)
3c: SUCCINIC ACID (SINc)
3d: SUCCINIC ACID (SINd)
3e: SUCCINIC ACID (SINe)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
C2E
1
Ligand/Ion
9,9'-[(2R,3R,3AS,5S,7AR,9R,10R,10AS,12S,14AR)-3,5,10,12-TETRAHYDROXY-5,12-DIOXIDOOCTAHYDRO-2H,7H-DIFURO[3,2-D:3',2'-J][1,3,7,9,2,8]TETRAOXADIPHOSPHACYCLODODECINE-2,9-DIYL]BIS(2-AMINO-1,9-DIHYDRO-6H-PURIN-6-ONE)
2
FE
4
Ligand/Ion
FE (III) ION
3
SIN
5
Ligand/Ion
SUCCINIC ACID
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Sites
(10, 10)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASP A:222 , HIS A:250 , HIS A:276 , HIS A:277 , FE A:402 , SIN A:404 , HOH A:501
BINDING SITE FOR RESIDUE FE A 401
02
AC2
SOFTWARE
GLU A:185 , ASP A:222 , LYS A:225 , FE A:401 , FE A:403 , SIN A:404 , SIN A:405 , HOH A:501
BINDING SITE FOR RESIDUE FE A 402
03
AC3
SOFTWARE
GLU A:185 , HIS A:189 , HIS A:221 , ASP A:222 , ASP A:305 , FE A:402 , SIN A:405 , HOH A:508
BINDING SITE FOR RESIDUE FE A 403
04
AC4
SOFTWARE
ASP A:222 , LYS A:225 , LYS A:238 , HIS A:250 , HIS A:277 , TYR A:285 , FE A:401 , FE A:402 , HOH A:501 , HOH A:509
BINDING SITE FOR RESIDUE SIN A 404
05
AC5
SOFTWARE
GLU A:185 , LYS A:238 , ASP A:305 , ALA A:309 , FE A:402 , FE A:403 , HOH A:501 , HOH A:506 , HOH A:507 , HOH A:510
BINDING SITE FOR RESIDUE SIN A 405
06
AC6
SOFTWARE
SER A:176 , HIS A:177 , THR A:179 , LYS A:180 , ASP A:183 , GLU A:185 , ILE A:190 , ASP A:222 , HOH A:503 , HOH A:504 , HOH A:508 , HOH A:511
BINDING SITE FOR RESIDUE SIN A 406
07
AC7
SOFTWARE
GLU A:275 , GLU A:278 , TRP A:280 , ILE A:294 , GLY A:298 , ARG A:299 , SER A:302 , HIS A:336 , PHE A:337 , ASP A:338
BINDING SITE FOR RESIDUE SIN A 407
08
AC8
SOFTWARE
LYS A:182 , LYS A:225 , VAL A:226 , ASP A:230 , HOH A:530 , HOH A:531 , LYS B:182 , LYS B:225 , VAL B:226 , LEU B:233 , HOH B:536 , HOH B:541
BINDING SITE FOR RESIDUE SIN A 408
09
AC9
SOFTWARE
ASP B:222 , HIS B:250 , HIS B:276 , HIS B:277 , HOH B:546
BINDING SITE FOR RESIDUE FE B 401
10
BC1
SOFTWARE
LYS B:235 , GLY B:237 , LEU B:239 , TRP B:244 , HIS B:277 , TYR B:285 , ASP B:305 , ALA B:309 , LEU B:310 , ARG B:314 , PHE B:328 , HIS B:336 , HOH B:502 , HOH B:504 , HOH B:511
BINDING SITE FOR RESIDUE C2E B 402
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
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CATH Domains
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Pfam Domains
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Asymmetric Unit 1
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Asym.Unit (259 KB)
Header - Asym.Unit
Biol.Unit 1 (252 KB)
Header - Biol.Unit 1
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