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4MCW
Asym. Unit
Info
Asym.Unit (266 KB)
Biol.Unit 1 (259 KB)
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(1)
Title
:
METALLO-ENZYME FROM P. MARINA
Authors
:
D. Bellini, M. A. Walsh, Oxford Protein Production Facility (Oppf
Date
:
21 Aug 13 (Deposition) - 19 Feb 14 (Release) - 19 Feb 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.03
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Structural Genomics, Oxford Protein Production Facility, Oppf, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
D. Bellini, D. L. Caly, Y. Mccarthy, M. Bumann, S. Q. An, J. M. Dow, R. P. Ryan, M. A. Walsh
Crystal Structure Of An Hd-Gyp Domain Cyclic-Di-Gmp Phosphodiesterase Reveals An Enzyme With A Novel Trinuclear Catalytic Iron Centre.
Mol. Microbiol. V. 91 26 2014
[
close entry info
]
Hetero Components
(4, 14)
Info
All Hetero Components
1a: 1,2-ETHANEDIOL (EDOa)
2a: FE (III) ION (FEa)
2b: FE (III) ION (FEb)
2c: FE (III) ION (FEc)
2d: FE (III) ION (FEd)
2e: FE (III) ION (FEe)
2f: FE (III) ION (FEf)
3a: IMIDAZOLE (IMDa)
4a: SUCCINIC ACID (SINa)
4b: SUCCINIC ACID (SINb)
4c: SUCCINIC ACID (SINc)
4d: SUCCINIC ACID (SINd)
4e: SUCCINIC ACID (SINe)
4f: SUCCINIC ACID (SINf)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
EDO
1
Ligand/Ion
1,2-ETHANEDIOL
2
FE
6
Ligand/Ion
FE (III) ION
3
IMD
1
Ligand/Ion
IMIDAZOLE
4
SIN
6
Ligand/Ion
SUCCINIC ACID
[
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Sites
(14, 14)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASP A:222 , HIS A:250 , HIS A:276 , HIS A:277 , FE A:402 , SIN A:404 , HOH A:575
BINDING SITE FOR RESIDUE FE A 401
02
AC2
SOFTWARE
GLU A:185 , ASP A:222 , LYS A:225 , FE A:401 , FE A:403 , SIN A:404 , SIN A:405 , HOH A:575 , HOH A:576
BINDING SITE FOR RESIDUE FE A 402
03
AC3
SOFTWARE
GLU A:185 , HIS A:189 , ASP A:305 , FE A:402 , SIN A:405 , IMD A:407 , HOH A:576
BINDING SITE FOR RESIDUE FE A 403
04
AC4
SOFTWARE
GLU A:185 , ASP A:222 , LYS A:225 , LYS A:238 , TRP A:244 , MET A:247 , HIS A:250 , HIS A:277 , TYR A:285 , FE A:401 , FE A:402 , SIN A:405 , HOH A:575 , HOH A:592 , HOH A:636
BINDING SITE FOR RESIDUE SIN A 404
05
AC5
SOFTWARE
GLU A:185 , HIS A:189 , GLY A:237 , LYS A:238 , ASP A:305 , ALA A:309 , FE A:402 , FE A:403 , SIN A:404 , HOH A:535 , HOH A:575 , HOH A:576 , HOH A:585 , HOH A:587 , HOH A:592 , HOH A:709 , HOH A:714
BINDING SITE FOR RESIDUE SIN A 405
06
AC6
SOFTWARE
SER A:176 , THR A:179 , ASP A:183 , GLU A:185 , ILE A:190 , PRO A:219 , MET A:220 , HIS A:221 , ASP A:222 , ILE A:223 , LYS A:225 , IMD A:407
BINDING SITE FOR RESIDUE SIN A 406
07
AC7
SOFTWARE
GLU A:185 , HIS A:189 , PRO A:219 , HIS A:221 , ASP A:222 , ASP A:305 , FE A:403 , SIN A:406 , HOH A:576
BINDING SITE FOR RESIDUE IMD A 407
08
AC8
SOFTWARE
TYR A:89 , ARG A:96 , ASP A:99 , LYS A:100 , TYR B:11 , LYS B:14 , PHE B:27 , ASP B:30
BINDING SITE FOR RESIDUE EDO A 408
09
AC9
SOFTWARE
ASP B:222 , HIS B:250 , HIS B:276 , HIS B:277 , SIN B:404 , HOH B:628
BINDING SITE FOR RESIDUE FE B 401
10
BC1
SOFTWARE
GLU B:185 , ASP B:222 , FE B:403 , SIN B:404 , SIN B:405 , HOH B:542 , HOH B:628
BINDING SITE FOR RESIDUE FE B 402
11
BC2
SOFTWARE
GLU B:185 , HIS B:189 , HIS B:221 , ASP B:305 , FE B:402 , SIN B:405 , HOH B:542 , HOH B:545
BINDING SITE FOR RESIDUE FE B 403
12
BC3
SOFTWARE
GLU B:185 , ASP B:222 , LYS B:225 , MET B:247 , HIS B:250 , HIS B:277 , TYR B:285 , FE B:401 , FE B:402 , SIN B:405 , HOH B:547 , HOH B:628 , HOH B:633 , HOH B:654
BINDING SITE FOR RESIDUE SIN B 404
13
BC4
SOFTWARE
GLU B:185 , ASP B:305 , VAL B:306 , ALA B:309 , FE B:402 , FE B:403 , SIN B:404 , HOH B:542 , HOH B:544 , HOH B:628
BINDING SITE FOR RESIDUE SIN B 405
14
BC5
SOFTWARE
ASP A:350 , TRP B:320 , ARG B:324 , ARG B:327 , PHE B:328 , GLU B:331 , HOH B:562
BINDING SITE FOR RESIDUE SIN B 406
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
Info
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;
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End label:
Sorry, no Info available
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
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CATH Domains
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Sorry, no Info available
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Pfam Domains
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all PFAM domains
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Asymmetric Unit 1
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Asym.Unit (266 KB)
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