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4MCQ
Asym. Unit
Info
Asym.Unit (278 KB)
Biol.Unit 1 (536 KB)
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(1)
Title
:
A HIGH RESOLUTION STRUCTURE OF HUMAN GLUTAMATE CARBOXYPEPTIDASE II (GCPII) IN COMPLEX WITH FOLYLDI-GAMMA-L-GLUTAMIC ACID (PTEROYLTRI-GAMMA-L-GLUTAMIC ACID)
Authors
:
M. Navratil, C. Barinka
Date
:
21 Aug 13 (Deposition) - 18 Jun 14 (Release) - 13 Aug 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.00
Chains
:
Asym. Unit : A
Biol. Unit 1: A (2x)
Keywords
:
Hydrolase, Metallopeptidase, Hydrolase-Hydrolase Inhibitor Complex, Prostate Specific Membrane Antigen, Folate Hydrolase 1, Folh1
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
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)
Reference
:
M. Navratil, J. Ptacek, P. Sacha, J. Starkova, J. Lubkowski, C. Barinka, J. Konvalinka
Structural And Biochemical Characterization Of The Folyl-Poly-Gamma-L-Glutamate Hydrolyzing Activity Of Human Glutamate Carboxypeptidase Ii.
Febs J. V. 281 3228 2014
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Hetero Components
(7, 18)
Info
All Hetero Components
1a: N-(4-{[(2-AMINO-4-OXO-3,4-DIHYDROP... (29Ca)
2a: BETA-D-MANNOSE (BMAa)
3a: CALCIUM ION (CAa)
4a: CHLORIDE ION (CLa)
5a: ALPHA-D-MANNOSE (MANa)
6a: N-ACETYL-D-GLUCOSAMINE (NAGa)
6b: N-ACETYL-D-GLUCOSAMINE (NAGb)
6c: N-ACETYL-D-GLUCOSAMINE (NAGc)
6d: N-ACETYL-D-GLUCOSAMINE (NAGd)
6e: N-ACETYL-D-GLUCOSAMINE (NAGe)
6f: N-ACETYL-D-GLUCOSAMINE (NAGf)
6g: N-ACETYL-D-GLUCOSAMINE (NAGg)
6h: N-ACETYL-D-GLUCOSAMINE (NAGh)
6i: N-ACETYL-D-GLUCOSAMINE (NAGi)
6j: N-ACETYL-D-GLUCOSAMINE (NAGj)
6k: N-ACETYL-D-GLUCOSAMINE (NAGk)
7a: ZINC ION (ZNa)
7b: ZINC ION (ZNb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
29C
1
Ligand/Ion
N-(4-{[(2-AMINO-4-OXO-3,4-DIHYDROPTERIDIN-6-YL)METHYL]AMINO}BENZOYL)-L-GAMMA-GLUTAMYL-L-GAMMA-GLUTAMYL-L-GLUTAMIC ACID
2
BMA
1
Ligand/Ion
BETA-D-MANNOSE
3
CA
1
Ligand/Ion
CALCIUM ION
4
CL
1
Ligand/Ion
CHLORIDE ION
5
MAN
1
Ligand/Ion
ALPHA-D-MANNOSE
6
NAG
11
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
7
ZN
2
Ligand/Ion
ZINC ION
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Sites
(18, 18)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
View:
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASP A:387 , GLU A:425 , HIS A:553 , ZN A:802 , 29C A:818 , HOH A:1309
BINDING SITE FOR RESIDUE ZN A 801
02
AC2
SOFTWARE
HIS A:377 , ASP A:387 , GLU A:425 , ASP A:453 , ZN A:801 , HOH A:1309
BINDING SITE FOR RESIDUE ZN A 802
03
AC3
SOFTWARE
THR A:269 , TYR A:272 , GLU A:433 , GLU A:436 , HOH A:906
BINDING SITE FOR RESIDUE CA A 803
04
AC4
SOFTWARE
ASN A:451 , ASP A:453 , ARG A:534 , ARG A:536 , HOH A:921
BINDING SITE FOR RESIDUE CL A 804
05
AC5
SOFTWARE
ASN A:76 , GLN A:95 , GLN A:99 , NAG A:806 , HOH A:1124 , HOH A:1255
BINDING SITE FOR RESIDUE NAG A 805
06
AC6
SOFTWARE
NAG A:805
BINDING SITE FOR RESIDUE NAG A 806
07
AC7
SOFTWARE
ASN A:121 , HIS A:124 , THR A:349 , HOH A:1100
BINDING SITE FOR RESIDUE NAG A 807
08
AC8
SOFTWARE
TYR A:127 , GLU A:137 , ILE A:138 , ASN A:140 , NAG A:809
BINDING SITE FOR RESIDUE NAG A 808
09
AC9
SOFTWARE
NAG A:808 , HOH A:1342
BINDING SITE FOR RESIDUE NAG A 809
10
BC1
SOFTWARE
ASN A:195 , SER A:197
BINDING SITE FOR RESIDUE NAG A 810
11
BC2
SOFTWARE
TRP A:246 , ASN A:459 , PHE A:565 , TYR A:566 , HOH A:978 , HOH A:1140 , HOH A:1299 , HOH A:1322 , HOH A:1374
BINDING SITE FOR RESIDUE NAG A 811
12
BC3
SOFTWARE
SER A:472 , ASN A:476 , PRO A:594 , NAG A:813 , HOH A:1406 , HOH A:1420
BINDING SITE FOR RESIDUE NAG A 812
13
BC4
SOFTWARE
GLN A:651 , NAG A:812 , HOH A:1262
BINDING SITE FOR RESIDUE NAG A 813
14
BC5
SOFTWARE
TYR A:277 , SER A:631 , SER A:634 , ASN A:638 , GLN A:740 , NAG A:815 , HOH A:1024 , HOH A:1057 , HOH A:1183
BINDING SITE FOR RESIDUE NAG A 814
15
BC6
SOFTWARE
GLU A:276 , NAG A:814 , BMA A:816
BINDING SITE FOR RESIDUE NAG A 815
16
BC7
SOFTWARE
HIS A:112 , GLU A:276 , ARG A:354 , NAG A:815 , MAN A:817
BINDING SITE FOR RESIDUE BMA A 816
17
BC8
SOFTWARE
PHE A:235 , LYS A:240 , SER A:241 , GLU A:276 , ARG A:354 , BMA A:816 , HOH A:1261 , HOH A:1277
BINDING SITE FOR RESIDUE MAN A 817
18
BC9
SOFTWARE
LYS A:207 , ARG A:210 , ASN A:257 , ASP A:387 , ALA A:424 , GLU A:425 , GLY A:427 , ARG A:463 , ARG A:511 , GLY A:518 , ASN A:519 , ARG A:534 , ARG A:536 , TRP A:541 , GLU A:542 , TYR A:552 , HIS A:553 , ASN A:698 , LYS A:699 , TYR A:700 , ZN A:801 , HOH A:909 , HOH A:1060 , HOH A:1067 , HOH A:1260 , HOH A:1268 , HOH A:1276 , HOH A:1309 , HOH A:1373 , HOH A:1415
BINDING SITE FOR RESIDUE 29C A 818
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
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CATH Domains
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Pfam Domains
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Chain A
Asymmetric Unit 1
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In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
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Asym.Unit (278 KB)
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Biol.Unit 1 (536 KB)
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