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4MA9
Asym. Unit
Info
Asym.Unit (615 KB)
Biol.Unit 1, α-C (1.2 MB)
Biol.Unit 1 (1.2 MB)
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(1)
Title
:
WILD TYPE SALMONELLA ALKYL HYDROPEROXIDE REDUCTASE C IN ITS SUBSTRATE-READY CONFORMATION
Authors
:
A. Perkins, P. A. Karplus
Date
:
15 Aug 13 (Deposition) - 20 Nov 13 (Release) - 12 Feb 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.82
Chains
:
Asym. Unit : A,B,C,D,E
Biol. Unit 1: A,B,C,D,E (2x)
Keywords
:
Thioredoxin Fold, Peroxidase, Peroxiredoxin, Prx1 Ahpc, 2-Cys Prx, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. Perkins, K. J. Nelson, J. R. Williams, D. Parsonage, L. B. Poole, P. A. Karplus
The Sensitive Balance Between The Fully Folded And Locally Unfolded Conformations Of A Model Peroxiredoxin.
Biochemistry V. 52 8708 2013
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Hetero Components
(3, 12)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
1b: CHLORIDE ION (CLb)
1c: CHLORIDE ION (CLc)
1d: CHLORIDE ION (CLd)
1e: CHLORIDE ION (CLe)
2a: GLYCEROL (GOLa)
2b: GLYCEROL (GOLb)
2c: GLYCEROL (GOLc)
2d: GLYCEROL (GOLd)
3a: POTASSIUM ION (Ka)
3b: POTASSIUM ION (Kb)
3c: POTASSIUM ION (Kc)
View:
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Label:
No.
Name
Count
Type
Full Name
1
CL
5
Ligand/Ion
CHLORIDE ION
2
GOL
4
Ligand/Ion
GLYCEROL
3
K
3
Ligand/Ion
POTASSIUM ION
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Sites
(12, 12)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
View:
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
SER A:1 , LEU A:2 , HOH A:1006 , HOH A:1011 , HOH A:1089
BINDING SITE FOR RESIDUE CL A 201
02
AC2
SOFTWARE
THR A:72 , HOH A:1064 , HOH A:1087
BINDING SITE FOR RESIDUE K A 202
03
AC3
SOFTWARE
PRO A:39 , PHE A:44 , ARG A:111 , GLU A:138 , HOH A:1154
BINDING SITE FOR RESIDUE GOL A 203
04
AC4
SOFTWARE
HOH A:1011 , SER B:1 , LEU B:2 , HOH B:1073 , HOH B:1096
BINDING SITE FOR RESIDUE CL B 201
05
AC5
SOFTWARE
THR B:72 , HOH B:1014 , HOH B:1279 , THR C:72 , HOH C:1047 , HOH C:1234
BINDING SITE FOR RESIDUE K B 202
06
AC6
SOFTWARE
GLU B:59 , LEU B:63 , LYS B:152 , GLY D:30 , HOH D:1292
BINDING SITE FOR RESIDUE GOL B 203
07
AC7
SOFTWARE
SER C:1 , LEU C:2 , HOH C:1030 , HOH C:1052 , HOH D:1053
BINDING SITE FOR RESIDUE CL C 201
08
AC8
SOFTWARE
PHE B:76 , PRO C:39 , GLU C:114 , LEU C:116 , GLU C:138 , HOH C:1253
BINDING SITE FOR RESIDUE GOL C 202
09
AC9
SOFTWARE
SER D:1 , LEU D:2 , HOH D:1053 , HOH D:1054
BINDING SITE FOR RESIDUE CL D 201
10
BC1
SOFTWARE
THR D:72 , HOH D:1195 , HOH D:1373 , THR E:72 , HOH E:1106 , HOH E:1261
BINDING SITE FOR RESIDUE K D 202
11
BC2
SOFTWARE
LEU B:63 , GLN B:155 , HOH B:1114 , HOH B:1299 , ARG D:31 , GLN D:61 , GLY D:64 , HOH D:1141
BINDING SITE FOR RESIDUE GOL D 203
12
BC3
SOFTWARE
SER E:1 , LEU E:2 , ILE E:133 , HOH E:1218 , HOH E:1465
BINDING SITE FOR RESIDUE CL E 201
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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PROSITE Patterns/Profiles
(0, 0)
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 5)
Info
All SCOP Domains
1a: SCOP_d4ma9a_ (A:)
1b: SCOP_d4ma9b_ (B:)
1c: SCOP_d4ma9c_ (C:)
1d: SCOP_d4ma9d_ (D:)
1e: SCOP_d4ma9e_ (E:)
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)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Thioredoxin fold
(994)
Superfamily
:
Thioredoxin-like
(992)
Family
:
Glutathione peroxidase-like
(136)
Protein domain
:
Alkyl hydroperoxide reductase AhpC
(9)
Salmonella enterica [TaxId: 90371]
(2)
1a
d4ma9a_
A:
1b
d4ma9b_
B:
1c
d4ma9c_
C:
1d
d4ma9d_
D:
1e
d4ma9e_
E:
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
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Atom Selection
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Protein
Nucleic
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Sidechain
Hetero
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Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Chain B
Chain C
Chain D
Chain E
Asymmetric Unit 1
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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Asym.Unit (615 KB)
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