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4M93
Asym. Unit
Info
Asym.Unit (295 KB)
Biol.Unit 1 (146 KB)
Biol.Unit 2 (147 KB)
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(1)
Title
:
UNLIGANDED 2 CRYSTAL STRUCTURE OF S25-26 FAB
Authors
:
O. Haji-Ghassemi, S. V. Evans
Date
:
14 Aug 13 (Deposition) - 09 Apr 14 (Release) - 09 Jul 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.09
Chains
:
Asym. Unit : B,C,H,L
Biol. Unit 1: H,L (1x)
Biol. Unit 2: B,C (1x)
Keywords
:
Carbohydrate/Sugar Binding, Immune System
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
O. Haji-Ghassemi, S. Muller-Loennies, R. Saldova, M. Muniyappa, L. Brade, P. M. Rudd, D. J. Harvey, P. Kosma, H. Brade, S. V. Evans
Groove-Type Recognition Of Chlamydiaceae-Specific Lipopolysaccharide Antigen By A Family Of Antibodies Possessing An Unusual Variable Heavy Chain N-Linked Glycan.
J. Biol. Chem. V. 289 16644 2014
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Hetero Components
(4, 8)
Info
All Hetero Components
1a: ACETATE ION (ACTa)
1b: ACETATE ION (ACTb)
1c: ACETATE ION (ACTc)
2a: CALCIUM ION (CAa)
3a: N-ACETYL-D-GLUCOSAMINE (NAGa)
3b: N-ACETYL-D-GLUCOSAMINE (NAGb)
4a: PYROGLUTAMIC ACID (PCAa)
4b: PYROGLUTAMIC ACID (PCAb)
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No.
Name
Count
Type
Full Name
1
ACT
3
Ligand/Ion
ACETATE ION
2
CA
1
Ligand/Ion
CALCIUM ION
3
NAG
2
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
4
PCA
2
Mod. Amino Acid
PYROGLUTAMIC ACID
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Sites
(6, 6)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
THR B:57 , ASP B:58 , HOH B:462 , HOH B:470 , HOH B:471 , THR C:202
BINDING SITE FOR RESIDUE CA B 302
2
AC2
SOFTWARE
GLY B:127 , SER B:128 , ALA B:129 , ALA B:130 , ACT B:304 , PHE C:209 , ASN C:210 , GLU C:213
BINDING SITE FOR RESIDUE ACT B 303
3
AC3
SOFTWARE
GLY B:127 , SER B:128 , ARG B:213 , ACT B:303 , HOH B:463 , PRO C:119 , ASN C:210 , GLU C:213
BINDING SITE FOR RESIDUE ACT B 304
4
AC4
SOFTWARE
SER B:19 , ILE B:20 , THR B:21 , PHE B:79 , PHE B:80 , LYS B:81
BINDING SITE FOR RESIDUE ACT B 305
5
AC5
SOFTWARE
LYS B:43 , GLN B:83 , ASN B:85
BINDING SITE FOR MONO-SACCHARIDE NAG B 301 BOUND TO ASN B 85
6
AC6
SOFTWARE
LYS H:43 , ASN H:85 , HOH H:456
BINDING SITE FOR MONO-SACCHARIDE NAG H 301 BOUND TO ASN H 85
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 4)
Info
All SCOP Domains
1a: SCOP_d4m93c2 (C:108-213)
1b: SCOP_d4m93l2 (L:108-213)
2a: SCOP_d4m93c1 (C:1-107)
2b: SCOP_d4m93l1 (L:1-107)
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Protein Domains
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Organisms
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(
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Class
:
All beta proteins
(24004)
Fold
:
Immunoglobulin-like beta-sandwich
(7299)
Superfamily
:
Immunoglobulin
(5995)
Family
:
C1 set domains (antibody constant domain-like)
(3013)
Protein domain
:
automated matches
(652)
Mouse (Mus musculus) [TaxId: 10090]
(309)
1a
d4m93c2
C:108-213
1b
d4m93l2
L:108-213
Family
:
V set domains (antibody variable domain-like)
(1919)
Protein domain
:
automated matches
(311)
Mouse (Mus musculus) [TaxId: 10090]
(112)
2a
d4m93c1
C:1-107
2b
d4m93l1
L:1-107
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CATH Domains
(0, 0)
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Pfam Domains
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Asymmetric Unit 1
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Asym.Unit (295 KB)
Header - Asym.Unit
Biol.Unit 1 (146 KB)
Header - Biol.Unit 1
Biol.Unit 2 (147 KB)
Header - Biol.Unit 2
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