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4M8R
Biol. Unit 1
Info
Asym.Unit (290 KB)
Biol.Unit 1 (560 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF A DUF4784 FAMILY PROTEIN (BACCAC_01631) FROM BACTEROIDES CACCAE ATCC 43185 AT 2.50 A RESOLUTION
Authors
:
Joint Center For Structural Genomics (Jcsg)
Date
:
13 Aug 13 (Deposition) - 09 Oct 13 (Release) - 24 Dec 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.50
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (2x)
Keywords
:
Pf16023 Family Protein, Duf4784, Structural Genomics, Joint Center For Structural Genomics, Jcsg, Protein Structure Initiative, Psi- Biology, Unknown Function
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
Joint Center For Structural Genomics (Jcsg)
Crystal Structure Of A Hypothetical Protein (Baccac_01631) From Bacteroides Caccae Atcc 43185 At 2. 50 A Resolution
To Be Published
[
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Hetero Components
(3, 80)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
1b: CHLORIDE ION (CLb)
2a: 1,2-ETHANEDIOL (EDOa)
2b: 1,2-ETHANEDIOL (EDOb)
2c: 1,2-ETHANEDIOL (EDOc)
2d: 1,2-ETHANEDIOL (EDOd)
2e: 1,2-ETHANEDIOL (EDOe)
2f: 1,2-ETHANEDIOL (EDOf)
2g: 1,2-ETHANEDIOL (EDOg)
2h: 1,2-ETHANEDIOL (EDOh)
2i: 1,2-ETHANEDIOL (EDOi)
3a: SELENOMETHIONINE (MSEa)
3b: SELENOMETHIONINE (MSEb)
3c: SELENOMETHIONINE (MSEc)
3d: SELENOMETHIONINE (MSEd)
3e: SELENOMETHIONINE (MSEe)
3f: SELENOMETHIONINE (MSEf)
3g: SELENOMETHIONINE (MSEg)
3h: SELENOMETHIONINE (MSEh)
3i: SELENOMETHIONINE (MSEi)
3j: SELENOMETHIONINE (MSEj)
3k: SELENOMETHIONINE (MSEk)
3l: SELENOMETHIONINE (MSEl)
3m: SELENOMETHIONINE (MSEm)
3n: SELENOMETHIONINE (MSEn)
3o: SELENOMETHIONINE (MSEo)
3p: SELENOMETHIONINE (MSEp)
3q: SELENOMETHIONINE (MSEq)
3r: SELENOMETHIONINE (MSEr)
3s: SELENOMETHIONINE (MSEs)
3t: SELENOMETHIONINE (MSEt)
4a: PHOSPHATE ION (PO4a)
4b: PHOSPHATE ION (PO4b)
4c: PHOSPHATE ION (PO4c)
4d: PHOSPHATE ION (PO4d)
4e: PHOSPHATE ION (PO4e)
4f: PHOSPHATE ION (PO4f)
4g: PHOSPHATE ION (PO4g)
4h: PHOSPHATE ION (PO4h)
4i: PHOSPHATE ION (PO4i)
4j: PHOSPHATE ION (PO4j)
4k: PHOSPHATE ION (PO4k)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CL
-1
Ligand/Ion
CHLORIDE ION
2
EDO
18
Ligand/Ion
1,2-ETHANEDIOL
3
MSE
40
Mod. Amino Acid
SELENOMETHIONINE
4
PO4
22
Ligand/Ion
PHOSPHATE ION
[
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]
Sites
(22, 22)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ARG A:70 , ARG A:234 , PRO A:263
BINDING SITE FOR RESIDUE PO4 A 501
02
AC2
SOFTWARE
ARG A:110 , LYS A:126 , TYR A:213 , ARG A:234 , ASN A:259
BINDING SITE FOR RESIDUE PO4 A 502
03
AC3
SOFTWARE
THR A:254 , LYS A:255 , THR A:256 , ARG A:257 , HOH A:625
BINDING SITE FOR RESIDUE PO4 A 503
04
AC4
SOFTWARE
ILE A:51 , HIS A:53 , GLU A:92 , SER A:99 , GLN B:233
BINDING SITE FOR RESIDUE PO4 A 504
05
AC5
SOFTWARE
LEU A:247 , TYR A:252
BINDING SITE FOR RESIDUE EDO A 505
06
AC6
SOFTWARE
ILE A:222 , PRO A:282 , PRO A:327 , PHE A:328 , TYR A:329 , ILE A:393 , ASN A:395 , HOH A:653
BINDING SITE FOR RESIDUE EDO A 506
07
AC7
SOFTWARE
TYR A:154 , TYR B:154
BINDING SITE FOR RESIDUE CL A 507
08
AC8
SOFTWARE
ARG B:70 , ARG B:234 , PRO B:263 , EDO B:508 , HOH B:685
BINDING SITE FOR RESIDUE PO4 B 501
09
AC9
SOFTWARE
ARG B:110 , LYS B:126 , TYR B:213 , ARG B:234 , ASN B:259 , HOH B:618 , HOH B:642 , HOH B:732
BINDING SITE FOR RESIDUE PO4 B 502
10
BC1
SOFTWARE
GLU B:92 , HIS B:94 , SER B:99 , ARG B:365 , GLU B:380
BINDING SITE FOR RESIDUE PO4 B 503
11
BC2
SOFTWARE
LYS A:47 , GLY B:235 , LYS B:236 , GLN B:266
BINDING SITE FOR RESIDUE PO4 B 504
12
BC3
SOFTWARE
GLU B:191 , ASN B:192 , ASP B:214 , ARG B:257
BINDING SITE FOR RESIDUE PO4 B 505
13
BC4
SOFTWARE
THR B:254 , LYS B:255 , THR B:256 , ARG B:257
BINDING SITE FOR RESIDUE PO4 B 506
14
BC5
SOFTWARE
ARG B:105 , THR B:182 , LEU B:247 , TYR B:252
BINDING SITE FOR RESIDUE PO4 B 507
15
BC6
SOFTWARE
ARG B:110 , PO4 B:501
BINDING SITE FOR RESIDUE EDO B 508
16
BC7
SOFTWARE
HIS B:94 , SER B:95
BINDING SITE FOR RESIDUE EDO B 509
17
BC8
SOFTWARE
LEU B:366 , GLN B:379 , GLU B:380 , PHE B:382
BINDING SITE FOR RESIDUE EDO B 510
18
BC9
SOFTWARE
ILE B:222 , PRO B:282 , PRO B:327 , PHE B:328 , TYR B:329 , ILE B:393 , ASN B:395 , HOH B:643
BINDING SITE FOR RESIDUE EDO B 511
19
CC1
SOFTWARE
GLY B:223 , GLY B:225 , ASP B:227 , TYR B:329 , LEU B:397
BINDING SITE FOR RESIDUE EDO B 512
20
CC2
SOFTWARE
SER B:250
BINDING SITE FOR RESIDUE EDO B 513
21
CC3
SOFTWARE
TYR B:104 , ARG B:105 , TYR B:252
BINDING SITE FOR RESIDUE EDO B 514
22
CC4
SOFTWARE
GLY B:299
BINDING SITE FOR RESIDUE CL B 515
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
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PROSITE Patterns/Profiles
(, 0)
Info
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;
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Sorry, no Info available
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Exons
(0, 0)
Info
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(0, 0)
Info
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Sorry, no Info available
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
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Info
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Sorry, no Info available
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Asymmetric Unit 1
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Example Command
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select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
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Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
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Asym.Unit (290 KB)
Header - Asym.Unit
Biol.Unit 1 (560 KB)
Header - Biol.Unit 1
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