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4M8L
Biol. Unit 2
Info
Asym.Unit (153 KB)
Biol.Unit 1 (76 KB)
Biol.Unit 2 (75 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF RPIA-R5P COMPLEX
Authors
:
R. Rostankowski, D. Borek, M. Orlikowska, C. Nakka, S. Grimshaw, Z. Otw Center For Structural Genomics Of Infectious Diseases (Csgi
Date
:
13 Aug 13 (Deposition) - 02 Oct 13 (Release) - 09 Oct 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.37
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,C (1x)
Biol. Unit 2: B,D (1x)
Keywords
:
Structural Genomics, Center For Structural Genomics Of Infectious Diseases, Csgid, Isomerase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
R. Rostankowski, D. Borek, M. Orlikowska, C. Nakka, S. Grimshaw, Z. Otwinowski, Center For Structural Genomics Of Infectious Diseases (Csgid)
Crystal Structure Of Rpia-R5P Complex
To Be Published
[
close entry info
]
Hetero Components
(2, 17)
Info
All Hetero Components
1a: RIBULOSE-5-PHOSPHATE (5RPa)
1b: RIBULOSE-5-PHOSPHATE (5RPb)
1c: RIBULOSE-5-PHOSPHATE (5RPc)
1d: RIBULOSE-5-PHOSPHATE (5RPd)
2a: FORMAMIDE (ARFa)
2aa: FORMAMIDE (ARFaa)
2ab: FORMAMIDE (ARFab)
2ac: FORMAMIDE (ARFac)
2ad: FORMAMIDE (ARFad)
2ae: FORMAMIDE (ARFae)
2af: FORMAMIDE (ARFaf)
2ag: FORMAMIDE (ARFag)
2ah: FORMAMIDE (ARFah)
2ai: FORMAMIDE (ARFai)
2aj: FORMAMIDE (ARFaj)
2ak: FORMAMIDE (ARFak)
2al: FORMAMIDE (ARFal)
2am: FORMAMIDE (ARFam)
2an: FORMAMIDE (ARFan)
2ao: FORMAMIDE (ARFao)
2b: FORMAMIDE (ARFb)
2c: FORMAMIDE (ARFc)
2d: FORMAMIDE (ARFd)
2e: FORMAMIDE (ARFe)
2f: FORMAMIDE (ARFf)
2g: FORMAMIDE (ARFg)
2h: FORMAMIDE (ARFh)
2i: FORMAMIDE (ARFi)
2j: FORMAMIDE (ARFj)
2k: FORMAMIDE (ARFk)
2l: FORMAMIDE (ARFl)
2m: FORMAMIDE (ARFm)
2n: FORMAMIDE (ARFn)
2o: FORMAMIDE (ARFo)
2p: FORMAMIDE (ARFp)
2q: FORMAMIDE (ARFq)
2r: FORMAMIDE (ARFr)
2s: FORMAMIDE (ARFs)
2t: FORMAMIDE (ARFt)
2u: FORMAMIDE (ARFu)
2v: FORMAMIDE (ARFv)
2w: FORMAMIDE (ARFw)
2x: FORMAMIDE (ARFx)
2y: FORMAMIDE (ARFy)
2z: FORMAMIDE (ARFz)
3a: CHLORIDE ION (CLa)
3b: CHLORIDE ION (CLb)
3c: CHLORIDE ION (CLc)
3d: CHLORIDE ION (CLd)
3e: CHLORIDE ION (CLe)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
5RP
2
Ligand/Ion
RIBULOSE-5-PHOSPHATE
2
ARF
15
Ligand/Ion
FORMAMIDE
3
CL
-1
Ligand/Ion
CHLORIDE ION
[
close Hetero Component info
]
Sites
(21, 21)
Info
All Sites
01: BC6 (SOFTWARE)
02: BC7 (SOFTWARE)
03: BC8 (SOFTWARE)
04: BC9 (SOFTWARE)
05: CC1 (SOFTWARE)
06: CC2 (SOFTWARE)
07: CC3 (SOFTWARE)
08: CC4 (SOFTWARE)
09: CC5 (SOFTWARE)
10: CC6 (SOFTWARE)
11: CC7 (SOFTWARE)
12: CC8 (SOFTWARE)
13: CC9 (SOFTWARE)
14: DC1 (SOFTWARE)
15: DC2 (SOFTWARE)
16: DC3 (SOFTWARE)
17: DC4 (SOFTWARE)
18: DC5 (SOFTWARE)
19: EC9 (SOFTWARE)
20: FC1 (SOFTWARE)
21: FC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
BC6
SOFTWARE
ARG A:146 , GLN B:159
BINDING SITE FOR RESIDUE CL A 317
02
BC7
SOFTWARE
THR B:34 , GLY B:35 , SER B:36 , THR B:37 , ASP B:87 , GLY B:88 , ALA B:89 , ASP B:90 , LYS B:100 , GLY B:101 , GLY B:102 , GLY B:103 , ALA B:104 , ALA B:105 , GLU B:109 , LYS B:127 , HOH B:407 , HOH B:456
BINDING SITE FOR RESIDUE 5RP B 301
03
BC8
SOFTWARE
THR B:34 , GLY B:103 , HOH B:463
BINDING SITE FOR RESIDUE ARF B 302
04
BC9
SOFTWARE
HIS B:95 , LYS B:96 , ALA B:209 , HOH B:423 , HOH B:449
BINDING SITE FOR RESIDUE ARF B 303
05
CC1
SOFTWARE
ALA B:68 , LYS B:207 , PRO B:208 , ASP B:210 , ARF B:308 , HOH B:405
BINDING SITE FOR RESIDUE ARF B 304
06
CC2
SOFTWARE
HIS B:95 , HOH B:426 , HOH B:474
BINDING SITE FOR RESIDUE ARF B 305
07
CC3
SOFTWARE
SER B:58 , ALA B:105 , THR B:107 , ARG B:108 , ASP B:169 , ASN B:170
BINDING SITE FOR RESIDUE ARF B 306
08
CC4
SOFTWARE
LYS B:67 , PHE B:71 , ASP B:72 , HOH B:459
BINDING SITE FOR RESIDUE ARF B 307
09
CC5
SOFTWARE
ALA B:116 , LYS B:117 , LYS B:207 , ASP B:210 , ARF B:304
BINDING SITE FOR RESIDUE ARF B 308
10
CC6
SOFTWARE
ARG B:64 , LYS B:67 , LEU B:206
BINDING SITE FOR RESIDUE ARF B 309
11
CC7
SOFTWARE
ASP B:75 , ASN B:77 , HOH B:433 , HOH B:455 , PRO D:143
BINDING SITE FOR RESIDUE ARF B 310
12
CC8
SOFTWARE
LYS B:110 , GLU B:189 , ASN B:193 , ARF B:313 , GLN D:194 , THR D:196
BINDING SITE FOR RESIDUE ARF B 311
13
CC9
SOFTWARE
HIS B:95 , GLU B:97
BINDING SITE FOR RESIDUE ARF B 312
14
DC1
SOFTWARE
ASN B:193 , ARF B:311 , ASN D:193 , GLN D:194 , ILE D:195
BINDING SITE FOR RESIDUE ARF B 313
15
DC2
SOFTWARE
GLN A:159 , PRO A:160 , ALA B:150 , ARG B:151 , VAL B:154 , HOH B:402
BINDING SITE FOR RESIDUE ARF B 314
16
DC3
SOFTWARE
ASP B:61 , ARG B:64 , ASN B:184 , LEU B:186
BINDING SITE FOR RESIDUE CL B 315
17
DC4
SOFTWARE
GLU B:164
BINDING SITE FOR RESIDUE CL B 316
18
DC5
SOFTWARE
ARG B:49 , ILE B:52 , LYS B:53
BINDING SITE FOR RESIDUE CL B 317
19
EC9
SOFTWARE
THR D:34 , GLY D:35 , SER D:36 , THR D:37 , ASP D:87 , GLY D:88 , ASP D:90 , LYS D:100 , GLY D:101 , GLY D:103 , ALA D:105 , GLU D:109 , LYS D:127 , HOH D:417 , HOH D:430
BINDING SITE FOR RESIDUE 5RP D 301
20
FC1
SOFTWARE
LYS D:110 , GLU D:189 , PHE D:204 , ALA D:205 , LEU D:206 , LYS D:207 , HOH D:435
BINDING SITE FOR RESIDUE ARF D 302
21
FC2
SOFTWARE
TYR D:148 , GLN D:152
BINDING SITE FOR RESIDUE ARF D 303
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
View:
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Sorry, no Info available
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PROSITE Patterns/Profiles
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Info
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Sorry, no Info available
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Exons
(0, 0)
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(0, 0)
Info
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Sorry, no Info available
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CATH Domains
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Sorry, no Info available
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Pfam Domains
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Sorry, no Info available
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Atom Selection
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Protein & NOT Variant
Protein & NOT Site
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Chain B
Chain D
Asymmetric Unit 1
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Example Commands
Example Command
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select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
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In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
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Asym.Unit (153 KB)
Header - Asym.Unit
Biol.Unit 1 (76 KB)
Header - Biol.Unit 1
Biol.Unit 2 (75 KB)
Header - Biol.Unit 2
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