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4M8L
Biol. Unit 1
Info
Asym.Unit (153 KB)
Biol.Unit 1 (76 KB)
Biol.Unit 2 (75 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF RPIA-R5P COMPLEX
Authors
:
R. Rostankowski, D. Borek, M. Orlikowska, C. Nakka, S. Grimshaw, Z. Otw Center For Structural Genomics Of Infectious Diseases (Csgi
Date
:
13 Aug 13 (Deposition) - 02 Oct 13 (Release) - 09 Oct 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.37
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,C (1x)
Biol. Unit 2: B,D (1x)
Keywords
:
Structural Genomics, Center For Structural Genomics Of Infectious Diseases, Csgid, Isomerase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
R. Rostankowski, D. Borek, M. Orlikowska, C. Nakka, S. Grimshaw, Z. Otwinowski, Center For Structural Genomics Of Infectious Diseases (Csgid)
Crystal Structure Of Rpia-R5P Complex
To Be Published
[
close entry info
]
Hetero Components
(2, 28)
Info
All Hetero Components
1a: RIBULOSE-5-PHOSPHATE (5RPa)
1b: RIBULOSE-5-PHOSPHATE (5RPb)
1c: RIBULOSE-5-PHOSPHATE (5RPc)
1d: RIBULOSE-5-PHOSPHATE (5RPd)
2a: FORMAMIDE (ARFa)
2aa: FORMAMIDE (ARFaa)
2ab: FORMAMIDE (ARFab)
2ac: FORMAMIDE (ARFac)
2ad: FORMAMIDE (ARFad)
2ae: FORMAMIDE (ARFae)
2af: FORMAMIDE (ARFaf)
2ag: FORMAMIDE (ARFag)
2ah: FORMAMIDE (ARFah)
2ai: FORMAMIDE (ARFai)
2aj: FORMAMIDE (ARFaj)
2ak: FORMAMIDE (ARFak)
2al: FORMAMIDE (ARFal)
2am: FORMAMIDE (ARFam)
2an: FORMAMIDE (ARFan)
2ao: FORMAMIDE (ARFao)
2b: FORMAMIDE (ARFb)
2c: FORMAMIDE (ARFc)
2d: FORMAMIDE (ARFd)
2e: FORMAMIDE (ARFe)
2f: FORMAMIDE (ARFf)
2g: FORMAMIDE (ARFg)
2h: FORMAMIDE (ARFh)
2i: FORMAMIDE (ARFi)
2j: FORMAMIDE (ARFj)
2k: FORMAMIDE (ARFk)
2l: FORMAMIDE (ARFl)
2m: FORMAMIDE (ARFm)
2n: FORMAMIDE (ARFn)
2o: FORMAMIDE (ARFo)
2p: FORMAMIDE (ARFp)
2q: FORMAMIDE (ARFq)
2r: FORMAMIDE (ARFr)
2s: FORMAMIDE (ARFs)
2t: FORMAMIDE (ARFt)
2u: FORMAMIDE (ARFu)
2v: FORMAMIDE (ARFv)
2w: FORMAMIDE (ARFw)
2x: FORMAMIDE (ARFx)
2y: FORMAMIDE (ARFy)
2z: FORMAMIDE (ARFz)
3a: CHLORIDE ION (CLa)
3b: CHLORIDE ION (CLb)
3c: CHLORIDE ION (CLc)
3d: CHLORIDE ION (CLd)
3e: CHLORIDE ION (CLe)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
5RP
2
Ligand/Ion
RIBULOSE-5-PHOSPHATE
2
ARF
26
Ligand/Ion
FORMAMIDE
3
CL
-1
Ligand/Ion
CHLORIDE ION
[
close Hetero Component info
]
Sites
(28, 28)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: DC2 (SOFTWARE)
17: DC6 (SOFTWARE)
18: DC7 (SOFTWARE)
19: DC8 (SOFTWARE)
20: DC9 (SOFTWARE)
21: EC1 (SOFTWARE)
22: EC2 (SOFTWARE)
23: EC3 (SOFTWARE)
24: EC4 (SOFTWARE)
25: EC5 (SOFTWARE)
26: EC6 (SOFTWARE)
27: EC7 (SOFTWARE)
28: EC8 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
THR A:34 , GLY A:35 , SER A:36 , THR A:37 , ASP A:87 , GLY A:88 , ALA A:89 , ASP A:90 , LYS A:100 , GLY A:101 , GLY A:102 , GLY A:103 , ALA A:104 , ALA A:105 , GLU A:109 , LYS A:127 , HOH A:425 , HOH A:457 , HOH A:469
BINDING SITE FOR RESIDUE 5RP A 301
02
AC2
SOFTWARE
VAL A:113 , GLU A:189 , PHE A:204 , LYS A:207 , HOH A:407 , HOH A:480
BINDING SITE FOR RESIDUE ARF A 302
03
AC3
SOFTWARE
HIS A:95 , ASP A:183 , HOH A:492
BINDING SITE FOR RESIDUE ARF A 303
04
AC4
SOFTWARE
LYS A:67 , PHE A:71 , ASP A:72
BINDING SITE FOR RESIDUE ARF A 304
05
AC5
SOFTWARE
HIS A:95 , GLU A:97
BINDING SITE FOR RESIDUE ARF A 305
06
AC6
SOFTWARE
ASP A:61 , GLY A:103 , HOH A:489
BINDING SITE FOR RESIDUE ARF A 307
07
AC7
SOFTWARE
SER A:36 , GLY A:39 , PHE A:40 , LYS A:65 , HOH A:427 , HOH A:432 , HOH A:496
BINDING SITE FOR RESIDUE ARF A 308
08
AC8
SOFTWARE
HOH A:420 , HOH A:421
BINDING SITE FOR RESIDUE ARF A 309
09
AC9
SOFTWARE
ASN A:94 , HIS A:95 , LYS A:96
BINDING SITE FOR RESIDUE ARF A 311
10
BC1
SOFTWARE
GLU A:189 , ASN A:193 , HOH A:480 , GLN C:194 , THR C:196
BINDING SITE FOR RESIDUE ARF A 312
11
BC2
SOFTWARE
LYS A:67 , ASP A:72 , VAL A:73
BINDING SITE FOR RESIDUE ARF A 313
12
BC3
SOFTWARE
HOH A:433
BINDING SITE FOR RESIDUE ARF A 314
13
BC4
SOFTWARE
ARG A:64 , LYS A:67 , ALA A:68 , LEU A:206
BINDING SITE FOR RESIDUE ARF A 315
14
BC5
SOFTWARE
ILE A:52 , LYS A:53 , PHE A:71 , ASP A:72 , HOH A:455
BINDING SITE FOR RESIDUE ARF A 316
15
BC6
SOFTWARE
ARG A:146 , GLN B:159
BINDING SITE FOR RESIDUE CL A 317
16
DC2
SOFTWARE
GLN A:159 , PRO A:160 , ALA B:150 , ARG B:151 , VAL B:154 , HOH B:402
BINDING SITE FOR RESIDUE ARF B 314
17
DC6
SOFTWARE
THR C:34 , GLY C:35 , SER C:36 , THR C:37 , ASP C:87 , GLY C:88 , ASP C:90 , LYS C:100 , GLY C:101 , GLY C:102 , GLY C:103 , ALA C:104 , ALA C:105 , GLU C:109 , LYS C:127 , ARF C:307 , HOH C:409 , HOH C:422 , HOH C:455
BINDING SITE FOR RESIDUE 5RP C 301
18
DC7
SOFTWARE
SER C:147 , ALA C:150 , ARG C:151 , VAL C:154 , ARF C:304 , HOH C:411
BINDING SITE FOR RESIDUE ARF C 302
19
DC8
SOFTWARE
MET A:144 , VAL C:56 , SER C:57 , VAL C:73 , VAL C:74 , ASP C:75 , LEU C:76 , HOH C:405
BINDING SITE FOR RESIDUE ARF C 303
20
DC9
SOFTWARE
ALA C:150 , ARG C:151 , VAL C:154 , ARF C:302
BINDING SITE FOR RESIDUE ARF C 304
21
EC1
SOFTWARE
GLU C:60 , ARG C:108 , ASP C:169 , ARF C:308
BINDING SITE FOR RESIDUE ARF C 306
22
EC2
SOFTWARE
ASP C:90 , PHE C:135 , 5RP C:301 , HOH C:455
BINDING SITE FOR RESIDUE ARF C 307
23
EC3
SOFTWARE
ARF C:306 , ARF C:311 , HOH C:402 , HOH C:443
BINDING SITE FOR RESIDUE ARF C 308
24
EC4
SOFTWARE
PRO C:143 , GLY C:171
BINDING SITE FOR RESIDUE ARF C 309
25
EC5
SOFTWARE
GLU C:60 , ASP C:61 , GLY C:103 , ASP C:169
BINDING SITE FOR RESIDUE ARF C 310
26
EC6
SOFTWARE
HIS C:95 , GLU C:97 , ALA C:205 , PRO C:208 , ARF C:308
BINDING SITE FOR RESIDUE ARF C 311
27
EC7
SOFTWARE
ARG C:163 , THR C:166 , HOH C:420
BINDING SITE FOR RESIDUE ARF C 312
28
EC8
SOFTWARE
ARG C:151 , GLN C:152
BINDING SITE FOR RESIDUE CL C 313
[
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]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
View:
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Sorry, no Info available
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PROSITE Patterns/Profiles
(, 0)
Info
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;
View:
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Label:
End label:
Sorry, no Info available
[
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Exons
(0, 0)
Info
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(0, 0)
Info
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Sorry, no Info available
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
[
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
[
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Protein & NOT Site
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Asymmetric Unit 1
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select all 'ALA' residues (Alanines) in chain 'A'
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
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show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
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Asym.Unit (153 KB)
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