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4M8L
Asym. Unit
Info
Asym.Unit (153 KB)
Biol.Unit 1 (76 KB)
Biol.Unit 2 (75 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF RPIA-R5P COMPLEX
Authors
:
R. Rostankowski, D. Borek, M. Orlikowska, C. Nakka, S. Grimshaw, Z. Otw Center For Structural Genomics Of Infectious Diseases (Csgi
Date
:
13 Aug 13 (Deposition) - 02 Oct 13 (Release) - 09 Oct 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.37
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,C (1x)
Biol. Unit 2: B,D (1x)
Keywords
:
Structural Genomics, Center For Structural Genomics Of Infectious Diseases, Csgid, Isomerase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
R. Rostankowski, D. Borek, M. Orlikowska, C. Nakka, S. Grimshaw, Z. Otwinowski, Center For Structural Genomics Of Infectious Diseases (Csgid)
Crystal Structure Of Rpia-R5P Complex
To Be Published
[
close entry info
]
Hetero Components
(3, 50)
Info
All Hetero Components
1a: RIBULOSE-5-PHOSPHATE (5RPa)
1b: RIBULOSE-5-PHOSPHATE (5RPb)
1c: RIBULOSE-5-PHOSPHATE (5RPc)
1d: RIBULOSE-5-PHOSPHATE (5RPd)
2a: FORMAMIDE (ARFa)
2aa: FORMAMIDE (ARFaa)
2ab: FORMAMIDE (ARFab)
2ac: FORMAMIDE (ARFac)
2ad: FORMAMIDE (ARFad)
2ae: FORMAMIDE (ARFae)
2af: FORMAMIDE (ARFaf)
2ag: FORMAMIDE (ARFag)
2ah: FORMAMIDE (ARFah)
2ai: FORMAMIDE (ARFai)
2aj: FORMAMIDE (ARFaj)
2ak: FORMAMIDE (ARFak)
2al: FORMAMIDE (ARFal)
2am: FORMAMIDE (ARFam)
2an: FORMAMIDE (ARFan)
2ao: FORMAMIDE (ARFao)
2b: FORMAMIDE (ARFb)
2c: FORMAMIDE (ARFc)
2d: FORMAMIDE (ARFd)
2e: FORMAMIDE (ARFe)
2f: FORMAMIDE (ARFf)
2g: FORMAMIDE (ARFg)
2h: FORMAMIDE (ARFh)
2i: FORMAMIDE (ARFi)
2j: FORMAMIDE (ARFj)
2k: FORMAMIDE (ARFk)
2l: FORMAMIDE (ARFl)
2m: FORMAMIDE (ARFm)
2n: FORMAMIDE (ARFn)
2o: FORMAMIDE (ARFo)
2p: FORMAMIDE (ARFp)
2q: FORMAMIDE (ARFq)
2r: FORMAMIDE (ARFr)
2s: FORMAMIDE (ARFs)
2t: FORMAMIDE (ARFt)
2u: FORMAMIDE (ARFu)
2v: FORMAMIDE (ARFv)
2w: FORMAMIDE (ARFw)
2x: FORMAMIDE (ARFx)
2y: FORMAMIDE (ARFy)
2z: FORMAMIDE (ARFz)
3a: CHLORIDE ION (CLa)
3b: CHLORIDE ION (CLb)
3c: CHLORIDE ION (CLc)
3d: CHLORIDE ION (CLd)
3e: CHLORIDE ION (CLe)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
5RP
4
Ligand/Ion
RIBULOSE-5-PHOSPHATE
2
ARF
41
Ligand/Ion
FORMAMIDE
3
CL
5
Ligand/Ion
CHLORIDE ION
[
close Hetero Component info
]
Sites
(47, 47)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
30: DC3 (SOFTWARE)
31: DC4 (SOFTWARE)
32: DC5 (SOFTWARE)
33: DC6 (SOFTWARE)
34: DC7 (SOFTWARE)
35: DC8 (SOFTWARE)
36: DC9 (SOFTWARE)
37: EC1 (SOFTWARE)
38: EC2 (SOFTWARE)
39: EC3 (SOFTWARE)
40: EC4 (SOFTWARE)
41: EC5 (SOFTWARE)
42: EC6 (SOFTWARE)
43: EC7 (SOFTWARE)
44: EC8 (SOFTWARE)
45: EC9 (SOFTWARE)
46: FC1 (SOFTWARE)
47: FC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
THR A:34 , GLY A:35 , SER A:36 , THR A:37 , ASP A:87 , GLY A:88 , ALA A:89 , ASP A:90 , LYS A:100 , GLY A:101 , GLY A:102 , GLY A:103 , ALA A:104 , ALA A:105 , GLU A:109 , LYS A:127 , HOH A:425 , HOH A:457 , HOH A:469
BINDING SITE FOR RESIDUE 5RP A 301
02
AC2
SOFTWARE
VAL A:113 , GLU A:189 , PHE A:204 , LYS A:207 , HOH A:407 , HOH A:480
BINDING SITE FOR RESIDUE ARF A 302
03
AC3
SOFTWARE
HIS A:95 , ASP A:183 , HOH A:492
BINDING SITE FOR RESIDUE ARF A 303
04
AC4
SOFTWARE
LYS A:67 , PHE A:71 , ASP A:72
BINDING SITE FOR RESIDUE ARF A 304
05
AC5
SOFTWARE
HIS A:95 , GLU A:97
BINDING SITE FOR RESIDUE ARF A 305
06
AC6
SOFTWARE
ASP A:61 , GLY A:103 , HOH A:489
BINDING SITE FOR RESIDUE ARF A 307
07
AC7
SOFTWARE
SER A:36 , GLY A:39 , PHE A:40 , LYS A:65 , HOH A:427 , HOH A:432 , HOH A:496
BINDING SITE FOR RESIDUE ARF A 308
08
AC8
SOFTWARE
HOH A:420 , HOH A:421
BINDING SITE FOR RESIDUE ARF A 309
09
AC9
SOFTWARE
ASN A:94 , HIS A:95 , LYS A:96
BINDING SITE FOR RESIDUE ARF A 311
10
BC1
SOFTWARE
GLU A:189 , ASN A:193 , HOH A:480 , GLN C:194 , THR C:196
BINDING SITE FOR RESIDUE ARF A 312
11
BC2
SOFTWARE
LYS A:67 , ASP A:72 , VAL A:73
BINDING SITE FOR RESIDUE ARF A 313
12
BC3
SOFTWARE
HOH A:433
BINDING SITE FOR RESIDUE ARF A 314
13
BC4
SOFTWARE
ARG A:64 , LYS A:67 , ALA A:68 , LEU A:206
BINDING SITE FOR RESIDUE ARF A 315
14
BC5
SOFTWARE
ILE A:52 , LYS A:53 , PHE A:71 , ASP A:72 , HOH A:455
BINDING SITE FOR RESIDUE ARF A 316
15
BC6
SOFTWARE
ARG A:146 , GLN B:159
BINDING SITE FOR RESIDUE CL A 317
16
BC7
SOFTWARE
THR B:34 , GLY B:35 , SER B:36 , THR B:37 , ASP B:87 , GLY B:88 , ALA B:89 , ASP B:90 , LYS B:100 , GLY B:101 , GLY B:102 , GLY B:103 , ALA B:104 , ALA B:105 , GLU B:109 , LYS B:127 , HOH B:407 , HOH B:456
BINDING SITE FOR RESIDUE 5RP B 301
17
BC8
SOFTWARE
THR B:34 , GLY B:103 , HOH B:463
BINDING SITE FOR RESIDUE ARF B 302
18
BC9
SOFTWARE
HIS B:95 , LYS B:96 , ALA B:209 , HOH B:423 , HOH B:449
BINDING SITE FOR RESIDUE ARF B 303
19
CC1
SOFTWARE
ALA B:68 , LYS B:207 , PRO B:208 , ASP B:210 , ARF B:308 , HOH B:405
BINDING SITE FOR RESIDUE ARF B 304
20
CC2
SOFTWARE
HIS B:95 , HOH B:426 , HOH B:474
BINDING SITE FOR RESIDUE ARF B 305
21
CC3
SOFTWARE
SER B:58 , ALA B:105 , THR B:107 , ARG B:108 , ASP B:169 , ASN B:170
BINDING SITE FOR RESIDUE ARF B 306
22
CC4
SOFTWARE
LYS B:67 , PHE B:71 , ASP B:72 , HOH B:459
BINDING SITE FOR RESIDUE ARF B 307
23
CC5
SOFTWARE
ALA B:116 , LYS B:117 , LYS B:207 , ASP B:210 , ARF B:304
BINDING SITE FOR RESIDUE ARF B 308
24
CC6
SOFTWARE
ARG B:64 , LYS B:67 , LEU B:206
BINDING SITE FOR RESIDUE ARF B 309
25
CC7
SOFTWARE
ASP B:75 , ASN B:77 , HOH B:433 , HOH B:455 , PRO D:143
BINDING SITE FOR RESIDUE ARF B 310
26
CC8
SOFTWARE
LYS B:110 , GLU B:189 , ASN B:193 , ARF B:313 , GLN D:194 , THR D:196
BINDING SITE FOR RESIDUE ARF B 311
27
CC9
SOFTWARE
HIS B:95 , GLU B:97
BINDING SITE FOR RESIDUE ARF B 312
28
DC1
SOFTWARE
ASN B:193 , ARF B:311 , ASN D:193 , GLN D:194 , ILE D:195
BINDING SITE FOR RESIDUE ARF B 313
29
DC2
SOFTWARE
GLN A:159 , PRO A:160 , ALA B:150 , ARG B:151 , VAL B:154 , HOH B:402
BINDING SITE FOR RESIDUE ARF B 314
30
DC3
SOFTWARE
ASP B:61 , ARG B:64 , ASN B:184 , LEU B:186
BINDING SITE FOR RESIDUE CL B 315
31
DC4
SOFTWARE
GLU B:164
BINDING SITE FOR RESIDUE CL B 316
32
DC5
SOFTWARE
ARG B:49 , ILE B:52 , LYS B:53
BINDING SITE FOR RESIDUE CL B 317
33
DC6
SOFTWARE
THR C:34 , GLY C:35 , SER C:36 , THR C:37 , ASP C:87 , GLY C:88 , ASP C:90 , LYS C:100 , GLY C:101 , GLY C:102 , GLY C:103 , ALA C:104 , ALA C:105 , GLU C:109 , LYS C:127 , ARF C:307 , HOH C:409 , HOH C:422 , HOH C:455
BINDING SITE FOR RESIDUE 5RP C 301
34
DC7
SOFTWARE
SER C:147 , ALA C:150 , ARG C:151 , VAL C:154 , ARF C:304 , HOH C:411
BINDING SITE FOR RESIDUE ARF C 302
35
DC8
SOFTWARE
MET A:144 , VAL C:56 , SER C:57 , VAL C:73 , VAL C:74 , ASP C:75 , LEU C:76 , HOH C:405
BINDING SITE FOR RESIDUE ARF C 303
36
DC9
SOFTWARE
ALA C:150 , ARG C:151 , VAL C:154 , ARF C:302
BINDING SITE FOR RESIDUE ARF C 304
37
EC1
SOFTWARE
GLU C:60 , ARG C:108 , ASP C:169 , ARF C:308
BINDING SITE FOR RESIDUE ARF C 306
38
EC2
SOFTWARE
ASP C:90 , PHE C:135 , 5RP C:301 , HOH C:455
BINDING SITE FOR RESIDUE ARF C 307
39
EC3
SOFTWARE
ARF C:306 , ARF C:311 , HOH C:402 , HOH C:443
BINDING SITE FOR RESIDUE ARF C 308
40
EC4
SOFTWARE
PRO C:143 , GLY C:171
BINDING SITE FOR RESIDUE ARF C 309
41
EC5
SOFTWARE
GLU C:60 , ASP C:61 , GLY C:103 , ASP C:169
BINDING SITE FOR RESIDUE ARF C 310
42
EC6
SOFTWARE
HIS C:95 , GLU C:97 , ALA C:205 , PRO C:208 , ARF C:308
BINDING SITE FOR RESIDUE ARF C 311
43
EC7
SOFTWARE
ARG C:163 , THR C:166 , HOH C:420
BINDING SITE FOR RESIDUE ARF C 312
44
EC8
SOFTWARE
ARG C:151 , GLN C:152
BINDING SITE FOR RESIDUE CL C 313
45
EC9
SOFTWARE
THR D:34 , GLY D:35 , SER D:36 , THR D:37 , ASP D:87 , GLY D:88 , ASP D:90 , LYS D:100 , GLY D:101 , GLY D:103 , ALA D:105 , GLU D:109 , LYS D:127 , HOH D:417 , HOH D:430
BINDING SITE FOR RESIDUE 5RP D 301
46
FC1
SOFTWARE
LYS D:110 , GLU D:189 , PHE D:204 , ALA D:205 , LEU D:206 , LYS D:207 , HOH D:435
BINDING SITE FOR RESIDUE ARF D 302
47
FC2
SOFTWARE
TYR D:148 , GLN D:152
BINDING SITE FOR RESIDUE ARF D 303
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
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Label:
Sorry, no Info available
[
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
Select:
Label:
End label:
Sorry, no Info available
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(0, 0)
Info
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View:
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Label:
Sorry, no Info available
[
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]
CATH Domains
(0, 0)
Info
all CATH domains
View:
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Label:
Sorry, no Info available
[
close CATH info
]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
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Label:
Sorry, no Info available
[
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]
Atom Selection
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select chains 'A' and 'C'
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select all 'ALA' residues (Alanines) in chain 'A'
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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