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4M7Z
Asym. Unit
Info
Asym.Unit (295 KB)
Biol.Unit 1 (145 KB)
Biol.Unit 2 (146 KB)
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(1)
Title
:
UNLIGANDED 1 CRYSTAL STRUCTURE OF S25-26 FAB
Authors
:
O. Haji-Ghassemi, S. V. Evans, S. Muller-Loennies, R. Saldova, M. Muni L. Brade, P. M. Rudd, D. J. Harvey, P. Kosma, H. Brade
Date
:
12 Aug 13 (Deposition) - 09 Apr 14 (Release) - 09 Jul 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.75
Chains
:
Asym. Unit : B,C,H,L
Biol. Unit 1: B,C (1x)
Biol. Unit 2: H,L (1x)
Keywords
:
Beta-Sandwich, Carbohydrate/Sugar Binding, Immune System
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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Reference
:
O. Haji-Ghassemi, S. Muller-Loennies, R. Saldova, M. Muniyappa, L. Brade, P. M. Rudd, D. J. Harvey, P. Kosma, H. Brade, S. V. Evans
Groove-Type Recognition Of Chlamydiaceae-Specific Lipopolysaccharide Antigen By A Family Of Antibodies Possessing An Unusual Variable Heavy Chain N-Linked Glycan.
J. Biol. Chem. V. 289 16644 2014
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Hetero Components
(4, 19)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
1b: CALCIUM ION (CAb)
1c: CALCIUM ION (CAc)
2a: N-ACETYL-D-GLUCOSAMINE (NAGa)
2b: N-ACETYL-D-GLUCOSAMINE (NAGb)
3a: DI(HYDROXYETHYL)ETHER (PEGa)
3b: DI(HYDROXYETHYL)ETHER (PEGb)
3c: DI(HYDROXYETHYL)ETHER (PEGc)
3d: DI(HYDROXYETHYL)ETHER (PEGd)
3e: DI(HYDROXYETHYL)ETHER (PEGe)
3f: DI(HYDROXYETHYL)ETHER (PEGf)
4a: TETRAETHYLENE GLYCOL (PG4a)
4b: TETRAETHYLENE GLYCOL (PG4b)
4c: TETRAETHYLENE GLYCOL (PG4c)
4d: TETRAETHYLENE GLYCOL (PG4d)
4e: TETRAETHYLENE GLYCOL (PG4e)
4f: TETRAETHYLENE GLYCOL (PG4f)
4g: TETRAETHYLENE GLYCOL (PG4g)
4h: TETRAETHYLENE GLYCOL (PG4h)
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Label:
No.
Name
Count
Type
Full Name
1
CA
3
Ligand/Ion
CALCIUM ION
2
NAG
2
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
3
PEG
6
Ligand/Ion
DI(HYDROXYETHYL)ETHER
4
PG4
8
Ligand/Ion
TETRAETHYLENE GLYCOL
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Sites
(18, 18)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
View:
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASN B:85
BINDING SITE FOR RESIDUE NAG B 401
02
AC2
SOFTWARE
SER B:7 , LYS B:75 , HIS B:77 , ASN H:82A
BINDING SITE FOR RESIDUE PG4 B 402
03
AC3
SOFTWARE
SER B:65 , ASN B:82A , HOH B:538 , LYS H:75 , HIS H:77
BINDING SITE FOR RESIDUE PG4 B 403
04
AC4
SOFTWARE
TRP B:52 , THR B:57 , ASP B:58 , CA B:409
BINDING SITE FOR RESIDUE PG4 B 404
05
AC5
SOFTWARE
GLN B:39 , PRO B:41 , ILE B:89 , LEU B:108 , GLU B:148 , ALA B:168
BINDING SITE FOR RESIDUE PG4 B 405
06
AC6
SOFTWARE
GLU B:6 , SER B:7 , GLY B:8 , GLY B:10 , GLY B:106 , THR B:107 , LEU B:108
BINDING SITE FOR RESIDUE PEG B 406
07
AC7
SOFTWARE
LYS B:43 , HOH C:434
BINDING SITE FOR RESIDUE PEG B 408
08
AC8
SOFTWARE
ASP B:58 , PG4 B:404
BINDING SITE FOR RESIDUE CA B 409
09
AC9
SOFTWARE
ASN H:85
BINDING SITE FOR RESIDUE NAG H 401
10
BC1
SOFTWARE
THR H:57 , ASP H:58 , CA H:404
BINDING SITE FOR RESIDUE PG4 H 402
11
BC2
SOFTWARE
GLN H:105 , GLY H:106
BINDING SITE FOR RESIDUE PEG H 403
12
BC3
SOFTWARE
ASP H:58 , PG4 H:402
BINDING SITE FOR RESIDUE CA H 404
13
BC4
SOFTWARE
GLN C:18 , SER C:20 , LYS C:74
BINDING SITE FOR RESIDUE PG4 C 301
14
BC5
SOFTWARE
LEU C:9 , TYR C:87 , GLY C:100 , GLY C:101 , HOH C:430 , HOH C:437
BINDING SITE FOR RESIDUE PEG C 302
15
BC6
SOFTWARE
GLY H:42 , LEU L:9 , TYR L:87 , GLY L:100 , LYS L:103
BINDING SITE FOR RESIDUE PG4 L 301
16
BC7
SOFTWARE
LYS L:74
BINDING SITE FOR RESIDUE PG4 L 302
17
BC8
SOFTWARE
PHE L:98
BINDING SITE FOR RESIDUE PEG L 303
18
BC9
SOFTWARE
GLU C:79 , GLU C:81 , GLU L:79 , GLU L:81
BINDING SITE FOR RESIDUE CA L 304
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 4)
Info
All SCOP Domains
1a: SCOP_d4m7zc2 (C:108-214)
1b: SCOP_d4m7zl2 (L:108-213)
2a: SCOP_d4m7zc1 (C:1-107)
2b: SCOP_d4m7zl1 (L:1-107)
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Protein Domains
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Class
:
All beta proteins
(24004)
Fold
:
Immunoglobulin-like beta-sandwich
(7299)
Superfamily
:
Immunoglobulin
(5995)
Family
:
C1 set domains (antibody constant domain-like)
(3013)
Protein domain
:
automated matches
(652)
Mouse (Mus musculus) [TaxId: 10090]
(309)
1a
d4m7zc2
C:108-214
1b
d4m7zl2
L:108-213
Family
:
V set domains (antibody variable domain-like)
(1919)
Protein domain
:
automated matches
(311)
Mouse (Mus musculus) [TaxId: 10090]
(112)
2a
d4m7zc1
C:1-107
2b
d4m7zl1
L:1-107
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CATH Domains
(0, 0)
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all CATH domains
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Pfam Domains
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Chain B
Chain C
Chain H
Chain L
Asymmetric Unit 1
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Show PDB file:
Asym.Unit (295 KB)
Header - Asym.Unit
Biol.Unit 1 (145 KB)
Header - Biol.Unit 1
Biol.Unit 2 (146 KB)
Header - Biol.Unit 2
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