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4M6V
Asym. Unit
Info
Asym.Unit (791 KB)
Biol.Unit 1 (779 KB)
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(1)
Title
:
STRUCTURE OF THE CARBOXYL TRANSFERASE DOMAIN FROM RHIZOBIUM ETLI PYRUVATE CARBOXYLASE WITH PYRUVATE AND BIOCYTIN
Authors
:
A. D. Lietzan, M. St. Maurice
Date
:
11 Aug 13 (Deposition) - 10 Sep 14 (Release) - 22 Oct 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.40
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D (1x)
Keywords
:
Tim Barrel, Ligase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. D. Lietzan, Y. Lin, M. St. Maurice
The Role Of Biotin And Oxamate In The Carboxyltransferase Reaction Of Pyruvate Carboxylase.
Arch. Biochem. Biophys. V. 562C 70 2014
[
close entry info
]
Hetero Components
(7, 30)
Info
All Hetero Components
1a: BIOCYTIN (BYTa)
1b: BIOCYTIN (BYTb)
1c: BIOCYTIN (BYTc)
1d: BIOCYTIN (BYTd)
1e: BIOCYTIN (BYTe)
1f: BIOCYTIN (BYTf)
1g: BIOCYTIN (BYTg)
1h: BIOCYTIN (BYTh)
2a: CHLORIDE ION (CLa)
2b: CHLORIDE ION (CLb)
2c: CHLORIDE ION (CLc)
2d: CHLORIDE ION (CLd)
3a: GLYCEROL (GOLa)
3b: GLYCEROL (GOLb)
4a: LYSINE NZ-CARBOXYLIC ACID (KCXa)
4b: LYSINE NZ-CARBOXYLIC ACID (KCXb)
4c: LYSINE NZ-CARBOXYLIC ACID (KCXc)
4d: LYSINE NZ-CARBOXYLIC ACID (KCXd)
5a: MAGNESIUM ION (MGa)
5b: MAGNESIUM ION (MGb)
5c: MAGNESIUM ION (MGc)
5d: MAGNESIUM ION (MGd)
6a: PYRUVIC ACID (PYRa)
6b: PYRUVIC ACID (PYRb)
6c: PYRUVIC ACID (PYRc)
6d: PYRUVIC ACID (PYRd)
7a: ZINC ION (ZNa)
7b: ZINC ION (ZNb)
7c: ZINC ION (ZNc)
7d: ZINC ION (ZNd)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BYT
8
Ligand/Ion
BIOCYTIN
2
CL
4
Ligand/Ion
CHLORIDE ION
3
GOL
2
Ligand/Ion
GLYCEROL
4
KCX
4
Mod. Amino Acid
LYSINE NZ-CARBOXYLIC ACID
5
MG
4
Ligand/Ion
MAGNESIUM ION
6
PYR
4
Ligand/Ion
PYRUVIC ACID
7
ZN
4
Ligand/Ion
ZINC ION
[
close Hetero Component info
]
Sites
(26, 26)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASP A:549 , KCX A:718 , HIS A:747 , HIS A:749 , HOH A:1203
BINDING SITE FOR RESIDUE ZN A 1101
02
AC2
SOFTWARE
MET A:534 , ARG A:535 , GLU A:537 , ASP A:768 , HOH A:1228
BINDING SITE FOR RESIDUE MG A 1102
03
AC3
SOFTWARE
TYR A:987 , PRO A:988 , LYS A:989 , VAL A:990
BINDING SITE FOR RESIDUE CL A 1103
04
AC4
SOFTWARE
ARG A:548 , GLN A:552 , GLY A:586 , LEU A:619 , ARG A:621 , KCX A:718 , THR A:882 , HOH A:1203 , HOH A:1341
BINDING SITE FOR RESIDUE PYR A 1104
05
AC5
SOFTWARE
ASP A:482 , GLY A:487 , HIS A:488 , PRO A:489 , ARG A:594 , PHE A:595 , THR A:597 , ALA A:997 , TYR A:1001 , ARG A:1066 , HOH A:1236 , HOH A:1256 , HOH A:1278 , HOH A:1311 , HOH A:1329 , HOH A:1335
BINDING SITE FOR RESIDUE BYT A 1105
06
AC6
SOFTWARE
GLU A:490 , ARG A:494 , ALA A:556 , PHE A:824 , THR A:846 , ASN A:847 , GLU A:850 , HOH A:1208
BINDING SITE FOR RESIDUE BYT A 1106
07
AC7
SOFTWARE
ASP A:750 , GLY A:753 , GLY A:779 , ASN A:780 , HOH A:1316 , ASP B:750 , GLY B:779 , ASN B:780 , HOH B:1273
BINDING SITE FOR RESIDUE GOL B 1101
08
AC8
SOFTWARE
ASP B:549 , KCX B:718 , HIS B:747 , HIS B:749 , HOH B:1205
BINDING SITE FOR RESIDUE ZN B 1102
09
AC9
SOFTWARE
MET B:534 , ARG B:535 , GLU B:537 , ASP B:768 , HOH B:1203 , HOH B:1250
BINDING SITE FOR RESIDUE MG B 1103
10
BC1
SOFTWARE
TYR B:987 , PRO B:988 , LYS B:989 , VAL B:990
BINDING SITE FOR RESIDUE CL B 1104
11
BC2
SOFTWARE
ARG B:548 , GLN B:552 , GLY B:586 , LEU B:619 , ARG B:621 , KCX B:718 , THR B:882 , HOH B:1205
BINDING SITE FOR RESIDUE PYR B 1105
12
BC3
SOFTWARE
TYR B:479 , ASP B:482 , GLY B:487 , HIS B:488 , ARG B:594 , PHE B:595 , THR B:597 , TYR B:1001 , ARG B:1066
BINDING SITE FOR RESIDUE BYT B 1106
13
BC4
SOFTWARE
ARG B:494 , ALA B:556 , PHE B:824 , THR B:846
BINDING SITE FOR RESIDUE BYT B 1107
14
BC5
SOFTWARE
ASP C:549 , KCX C:718 , HIS C:747 , HIS C:749 , HOH C:1203
BINDING SITE FOR RESIDUE ZN C 1101
15
BC6
SOFTWARE
ASP C:750 , GLY C:779 , ASN C:780 , HOH C:1274 , ASP D:750 , GLY D:753 , ASN D:780
BINDING SITE FOR RESIDUE GOL C 1102
16
BC7
SOFTWARE
MET C:534 , ARG C:535 , GLU C:537 , ASP C:768 , HOH C:1207 , HOH C:1235
BINDING SITE FOR RESIDUE MG C 1103
17
BC8
SOFTWARE
TYR C:987 , LYS C:989 , VAL C:990
BINDING SITE FOR RESIDUE CL C 1104
18
BC9
SOFTWARE
ARG C:548 , GLN C:552 , GLY C:586 , LEU C:619 , ARG C:621 , PHE C:654 , THR C:882 , HOH C:1203
BINDING SITE FOR RESIDUE PYR C 1105
19
CC1
SOFTWARE
TYR C:479 , ASP C:482 , GLY C:487 , HIS C:488 , PRO C:489 , ARG C:594 , PHE C:595 , THR C:597 , TYR C:1001 , ARG C:1066
BINDING SITE FOR RESIDUE BYT C 1106
20
CC2
SOFTWARE
GLU C:490 , ARG C:494 , ALA C:556 , PHE C:824 , THR C:846 , GLU C:850
BINDING SITE FOR RESIDUE BYT C 1107
21
CC3
SOFTWARE
ASP D:549 , KCX D:718 , HIS D:747 , HIS D:749 , HOH D:1202
BINDING SITE FOR RESIDUE ZN D 1101
22
CC4
SOFTWARE
MET D:534 , ARG D:535 , GLU D:537 , ASP D:768 , HOH D:1238 , HOH D:1242
BINDING SITE FOR RESIDUE MG D 1102
23
CC5
SOFTWARE
TYR D:987 , PRO D:988 , LYS D:989 , VAL D:990
BINDING SITE FOR RESIDUE CL D 1103
24
CC6
SOFTWARE
ARG D:548 , GLN D:552 , GLY D:586 , LEU D:619 , ARG D:621 , KCX D:718 , VAL D:881 , THR D:882 , HOH D:1202
BINDING SITE FOR RESIDUE PYR D 1104
25
CC7
SOFTWARE
TYR D:479 , ASP D:482 , GLY D:487 , HIS D:488 , PRO D:489 , ARG D:594 , THR D:597 , ALA D:997 , TYR D:1001 , ARG D:1066
BINDING SITE FOR RESIDUE BYT D 1105
26
CC8
SOFTWARE
ALA D:556 , PHE D:824 , THR D:846 , ASN D:847 , GLU D:850
BINDING SITE FOR RESIDUE BYT D 1106
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
Info
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;
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Sorry, no Info available
[
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Exons
(0, 0)
Info
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(0, 0)
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Sorry, no Info available
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
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Info
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Sorry, no Info available
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Asymmetric Unit 1
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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Asym.Unit (791 KB)
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