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4M4S
Asym. Unit
Info
Asym.Unit (90 KB)
Biol.Unit 1 (84 KB)
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(1)
Title
:
GAMMA SUBUNIT OF THE TRANSLATION INITIATION FACTOR 2 FROM SULFOLOBUS SOLFATARICUS IN COMPLEX WITH GDP AND FORMATE ION MIMIC AIF2GAMMA*GDP*PI COMPLEX (A FORMATE ION SUBSTITUTES FOR PI)
Authors
:
O. S. Nikonov, E. A. Stolboushkina, V. I. Arkhipova, A. G. Gabdulkhakov A. D. Nikulin, M. B. Garber, S. V. Nikonov
Date
:
07 Aug 13 (Deposition) - 12 Mar 14 (Release) - 12 Mar 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.25
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Aif2, Aif2 Gamma Subunit, G-Protein, Translation, Translation Initiation, Protein Biosynthesis, Rna-Binding, Gtp-Binding, Nucleotide-Binding
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
O. Nikonov, E. Stolboushkina, V. Arkhipova, O. Kravchenko, S. Nikonov, M. Garber
Conformational Transitions In The Gamma Subunit Of The Archaeal Translation Initiation Factor 2
Acta Crystallogr. , Sect. D V. 70 658 2014
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Hetero Components
(4, 36)
Info
All Hetero Components
1a: FORMIC ACID (FMTa)
1aa: FORMIC ACID (FMTaa)
1ab: FORMIC ACID (FMTab)
1ac: FORMIC ACID (FMTac)
1b: FORMIC ACID (FMTb)
1c: FORMIC ACID (FMTc)
1d: FORMIC ACID (FMTd)
1e: FORMIC ACID (FMTe)
1f: FORMIC ACID (FMTf)
1g: FORMIC ACID (FMTg)
1h: FORMIC ACID (FMTh)
1i: FORMIC ACID (FMTi)
1j: FORMIC ACID (FMTj)
1k: FORMIC ACID (FMTk)
1l: FORMIC ACID (FMTl)
1m: FORMIC ACID (FMTm)
1n: FORMIC ACID (FMTn)
1o: FORMIC ACID (FMTo)
1p: FORMIC ACID (FMTp)
1q: FORMIC ACID (FMTq)
1r: FORMIC ACID (FMTr)
1s: FORMIC ACID (FMTs)
1t: FORMIC ACID (FMTt)
1u: FORMIC ACID (FMTu)
1v: FORMIC ACID (FMTv)
1w: FORMIC ACID (FMTw)
1x: FORMIC ACID (FMTx)
1y: FORMIC ACID (FMTy)
1z: FORMIC ACID (FMTz)
2a: GUANOSINE-5'-DIPHOSPHATE (GDPa)
3a: MAGNESIUM ION (MGa)
3b: MAGNESIUM ION (MGb)
4a: SODIUM ION (NAa)
4b: SODIUM ION (NAb)
4c: SODIUM ION (NAc)
4d: SODIUM ION (NAd)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
FMT
29
Ligand/Ion
FORMIC ACID
2
GDP
1
Ligand/Ion
GUANOSINE-5'-DIPHOSPHATE
3
MG
2
Ligand/Ion
MAGNESIUM ION
4
NA
4
Ligand/Ion
SODIUM ION
[
close Hetero Component info
]
Sites
(36, 36)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
30: DC3 (SOFTWARE)
31: DC4 (SOFTWARE)
32: DC5 (SOFTWARE)
33: DC6 (SOFTWARE)
34: DC7 (SOFTWARE)
35: DC8 (SOFTWARE)
36: DC9 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
MET A:45 , THR A:46 , PRO A:95 , GLY A:96 , HIS A:97 , HOH A:901 , HOH A:908
BINDING SITE FOR RESIDUE FMT A 501
02
AC2
SOFTWARE
SER A:268 , TYR A:269 , TRP A:327 , HOH A:1013
BINDING SITE FOR RESIDUE FMT A 502
03
AC3
SOFTWARE
ARG A:219 , SER A:220 , THR A:306 , HOH A:621 , HOH A:669
BINDING SITE FOR RESIDUE FMT A 503
04
AC4
SOFTWARE
SER A:314 , VAL A:361 , SER A:364 , VAL A:386 , ALA A:387 , HOH A:643 , HOH A:667
BINDING SITE FOR RESIDUE FMT A 504
05
AC5
SOFTWARE
HIS A:37 , SER A:38 , ASN A:190 , SER A:193 , HOH A:607 , HOH A:821
BINDING SITE FOR RESIDUE FMT A 505
06
AC6
SOFTWARE
ALA A:342 , LYS A:343 , GLU A:344 , HOH A:711
BINDING SITE FOR RESIDUE FMT A 506
07
AC7
SOFTWARE
ASN A:121 , LYS A:150 , ASP A:152 , GDP A:530 , HOH A:697
BINDING SITE FOR RESIDUE FMT A 507
08
AC8
SOFTWARE
LEU A:367 , ARG A:384 , HOH A:872
BINDING SITE FOR RESIDUE FMT A 508
09
AC9
SOFTWARE
LYS A:254 , ALA A:319 , HOH A:729 , HOH A:825
BINDING SITE FOR RESIDUE FMT A 509
10
BC1
SOFTWARE
SER A:35 , LYS A:36 , GLU A:39 , THR A:46 , ASN A:224 , HOH A:824
BINDING SITE FOR RESIDUE FMT A 510
11
BC2
SOFTWARE
HIS A:37 , LEU A:41 , HOH A:716 , HOH A:973 , HOH A:974 , HOH A:975
BINDING SITE FOR RESIDUE FMT A 511
12
BC3
SOFTWARE
ARG A:88 , FMT A:513 , HOH A:630 , HOH A:915 , HOH A:1025
BINDING SITE FOR RESIDUE FMT A 512
13
BC4
SOFTWARE
ASN A:55 , ARG A:88 , FMT A:512 , HOH A:724 , HOH A:785
BINDING SITE FOR RESIDUE FMT A 513
14
BC5
SOFTWARE
LYS A:64 , TYR A:68 , HOH A:847 , HOH A:917 , HOH A:1010
BINDING SITE FOR RESIDUE FMT A 514
15
BC6
SOFTWARE
LYS A:64 , TYR A:68 , HOH A:730
BINDING SITE FOR RESIDUE FMT A 515
16
BC7
SOFTWARE
LYS A:5 , GLU A:285 , PHE A:286
BINDING SITE FOR RESIDUE FMT A 516
17
BC8
SOFTWARE
LYS A:234 , HOH A:800 , HOH A:812
BINDING SITE FOR RESIDUE FMT A 517
18
BC9
SOFTWARE
GLN A:400 , FMT A:519 , HOH A:969
BINDING SITE FOR RESIDUE FMT A 518
19
CC1
SOFTWARE
FMT A:518 , HOH A:762 , HOH A:962
BINDING SITE FOR RESIDUE FMT A 519
20
CC2
SOFTWARE
ARG A:130 , SER A:161 , ARG A:164 , LYS A:343 , HOH A:664 , HOH A:714
BINDING SITE FOR RESIDUE FMT A 520
21
CC3
SOFTWARE
LYS A:42 , TYR A:163 , PRO A:179 , ILE A:180 , HOH A:801
BINDING SITE FOR RESIDUE FMT A 521
22
CC4
SOFTWARE
TRP A:3 , ASN A:55 , PRO A:72 , HOH A:630
BINDING SITE FOR RESIDUE FMT A 522
23
CC5
SOFTWARE
LYS A:48 , SER A:220 , VAL A:223 , ASN A:224 , HOH A:846 , HOH A:869
BINDING SITE FOR RESIDUE FMT A 523
24
CC6
SOFTWARE
ALA A:2 , GLU A:82
BINDING SITE FOR RESIDUE FMT A 524
25
CC7
SOFTWARE
GLN A:27 , ALA A:28 , ALA A:185 , LEU A:186 , LYS A:188
BINDING SITE FOR RESIDUE FMT A 525
26
CC8
SOFTWARE
VAL A:217 , GLY A:313 , SER A:363 , HOH A:620 , HOH A:946 , HOH A:950
BINDING SITE FOR RESIDUE FMT A 526
27
CC9
SOFTWARE
PHE A:286 , LYS A:287 , GLU A:288 , HOH A:753
BINDING SITE FOR RESIDUE FMT A 527
28
DC1
SOFTWARE
LEU A:105 , ILE A:139 , SER A:360 , VAL A:361 , GLY A:362
BINDING SITE FOR RESIDUE FMT A 528
29
DC2
SOFTWARE
VAL A:325 , LEU A:326 , TRP A:327 , ASN A:328
BINDING SITE FOR RESIDUE FMT A 529
30
DC3
SOFTWARE
ASP A:19 , HIS A:20 , GLY A:21 , LYS A:22 , THR A:23 , THR A:24 , ASN A:149 , LYS A:150 , VAL A:151 , ASP A:152 , VAL A:153 , LYS A:156 , SER A:184 , ALA A:185 , LEU A:186 , FMT A:507 , MG A:531 , NA A:534 , HOH A:618 , HOH A:632 , HOH A:901 , HOH A:906 , HOH A:907 , HOH A:908 , HOH A:909 , HOH A:973 , HOH A:991
BINDING SITE FOR RESIDUE GDP A 530
31
DC4
SOFTWARE
THR A:23 , GDP A:530 , HOH A:901 , HOH A:902 , HOH A:906 , HOH A:907
BINDING SITE FOR RESIDUE MG A 531
32
DC5
SOFTWARE
HIS A:187 , HOH A:1037
BINDING SITE FOR RESIDUE MG A 532
33
DC6
SOFTWARE
GLU A:66 , TYR A:68 , SER A:76 , HOH A:921 , HOH A:922
BINDING SITE FOR RESIDUE NA A 533
34
DC7
SOFTWARE
VAL A:151 , VAL A:154 , GDP A:530 , HOH A:614 , HOH A:657 , HOH A:973
BINDING SITE FOR RESIDUE NA A 534
35
DC8
SOFTWARE
MET A:111 , HOH A:613 , HOH A:675 , HOH A:720 , HOH A:779 , HOH A:1004 , HOH A:1017
BINDING SITE FOR RESIDUE NA A 535
36
DC9
SOFTWARE
THR A:54 , THR A:70 , HOH A:630 , HOH A:638 , HOH A:653 , HOH A:683
BINDING SITE FOR RESIDUE NA A 536
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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Sorry, no Info available
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
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End label:
Sorry, no Info available
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(3, 3)
Info
All SCOP Domains
1a: SCOP_d4m4sa3 (A:321-415)
2a: SCOP_d4m4sa2 (A:207-320)
3a: SCOP_d4m4sa1 (A:2-206)
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Classes
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(
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Folds
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(
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Superfamilies
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(
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Families
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(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Elongation factor/aminomethyltransferase common domain
(82)
Superfamily
:
EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
(67)
Family
:
EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
(48)
Protein domain
:
Initiation factor eIF2 gamma subunit
(16)
Sulfolobus solfataricus [TaxId: 2287]
(10)
1a
d4m4sa3
A:321-415
Fold
:
Reductase/isomerase/elongation factor common domain
(381)
Superfamily
:
Translation proteins
(218)
Family
:
Elongation factors
(77)
Protein domain
:
Initiation factor eIF2 gamma subunit, domain II
(16)
Sulfolobus solfataricus [TaxId: 2287]
(10)
2a
d4m4sa2
A:207-320
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Superfamily
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Family
:
G proteins
(693)
Protein domain
:
Initiation factor eIF2 gamma subunit, N-terminal (G) domain
(16)
Sulfolobus solfataricus [TaxId: 2287]
(10)
3a
d4m4sa1
A:2-206
[
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]
CATH Domains
(0, 0)
Info
all CATH domains
View:
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Sorry, no Info available
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
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Protein & NOT PROSITE
Chain A
Asymmetric Unit 1
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