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4M33
Asym. Unit
Info
Asym.Unit (112 KB)
Biol.Unit 1 (314 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF GATED-PORE MUTANT H141D OF SECOND DNA-BINDING PROTEIN UNDER STARVATION FROM MYCOBACTERIUM SMEGMATIS
Authors
:
S. M. Williams, A. V. Chandran, M. S. Vijayabaskar, S. Roy, H. Balaram, S. Vishveshwara, M. Vijayan, D. Chatterji
Date
:
06 Aug 13 (Deposition) - 05 Mar 14 (Release) - 11 Jun 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.22
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D (3x)
Keywords
:
Ferritin-Like Fold, Ferroxidation, Iron, Dna Binding Protein
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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Reference
:
S. M. Williams, A. V. Chandran, M. S. Vijayabaskar, S. Roy, H. Balaram, S. Vishveshwara, M. Vijayan, D. Chatterji
A Histidine Aspartate Ionic Lock Gates The Iron Passage In Miniferritins From Mycobacterium Smegmatis
J. Biol. Chem. V. 289 11042 2014
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Hetero Components
(3, 12)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
1b: CHLORIDE ION (CLb)
2a: FE (II) ION (FE2a)
2b: FE (II) ION (FE2b)
2c: FE (II) ION (FE2c)
2d: FE (II) ION (FE2d)
3a: MAGNESIUM ION (MGa)
3b: MAGNESIUM ION (MGb)
3c: MAGNESIUM ION (MGc)
3d: MAGNESIUM ION (MGd)
3e: MAGNESIUM ION (MGe)
3f: MAGNESIUM ION (MGf)
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Label:
No.
Name
Count
Type
Full Name
1
CL
2
Ligand/Ion
CHLORIDE ION
2
FE2
4
Ligand/Ion
FE (II) ION
3
MG
6
Ligand/Ion
MAGNESIUM ION
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Sites
(12, 12)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASP A:68 , GLU A:72 , HIS B:41 , ASP B:57
BINDING SITE FOR RESIDUE FE2 A 201
02
AC2
SOFTWARE
ASN A:48 , ASP A:51
BINDING SITE FOR RESIDUE MG A 202
03
AC3
SOFTWARE
ASP A:138 , HOH A:392 , HOH A:393 , ASP B:138 , ASP C:138 , HOH C:390
BINDING SITE FOR RESIDUE MG A 203
04
AC4
SOFTWARE
ARG A:50 , HOH A:389
BINDING SITE FOR RESIDUE CL A 204
05
AC5
SOFTWARE
HIS A:41 , ASP A:57 , HOH A:404 , ASP B:68 , GLU B:72 , HOH B:370
BINDING SITE FOR RESIDUE FE2 B 201
06
AC6
SOFTWARE
ASN B:48 , ASP B:51 , ASN C:48 , ASP C:51 , ASN D:48 , ASP D:51
BINDING SITE FOR RESIDUE MG B 202
07
AC7
SOFTWARE
HOH A:394 , HOH A:396 , HOH B:371 , HOH C:302 , HOH C:391
BINDING SITE FOR RESIDUE MG B 203
08
AC8
SOFTWARE
ARG B:50 , ARG C:50 , HOH C:388 , ARG D:50
BINDING SITE FOR RESIDUE CL B 204
09
AC9
SOFTWARE
ASP C:68 , GLU C:72 , HOH C:396 , HIS D:41 , ASP D:57
BINDING SITE FOR RESIDUE FE2 C 201
10
BC1
SOFTWARE
HIS C:41 , ASP C:57 , ASP D:68 , GLU D:72
BINDING SITE FOR RESIDUE FE2 D 201
11
BC2
SOFTWARE
ASP D:138 , HOH D:370
BINDING SITE FOR RESIDUE MG D 202
12
BC3
SOFTWARE
HOH D:369 , HOH D:373
BINDING SITE FOR RESIDUE MG D 203
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d4m33a_ (A:)
1b: SCOP_d4m33b_ (B:)
1c: SCOP_d4m33c_ (C:)
1d: SCOP_d4m33d_ (D:)
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Class
:
All alpha proteins
(14657)
Fold
:
Ferritin-like
(533)
Superfamily
:
Ferritin-like
(489)
Family
:
automated matches
(54)
Protein domain
:
automated matches
(54)
Mycobacterium smegmatis [TaxId: 246196]
(6)
1a
d4m33a_
A:
1b
d4m33b_
B:
1c
d4m33c_
C:
1d
d4m33d_
D:
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CATH Domains
(0, 0)
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all CATH domains
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Pfam Domains
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Asym.Unit (112 KB)
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