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4M2L
Asym. Unit
Info
Asym.Unit (79 KB)
Biol.Unit 1 (74 KB)
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(1)
Title
:
GAMMA SUBUNIT OF THE TRANSLATION INITIATION FACTOR 2 FROM SULFOLOBUS SOLFATARICUS IN NUCLEOTIDE-FREE FORM
Authors
:
O. S. Nikonov, E. A. Stolboushkina, V. I. Arkhipova, A. G. Gabdulkhakov A. D. Nikulin, M. B. Garber, S. V. Nikonov
Date
:
05 Aug 13 (Deposition) - 12 Mar 14 (Release) - 12 Mar 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.15
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Aif2, Aif2 Gamma Subunit, G-Protein, Translation, Translation Initiation, Protein Biosynthesis, Rna-Binding, Gtp-Binding, Nucleotide-Binding
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
O. Nikonov, E. Stolboushkina, V. Arkhipova, O. Kravchenko, S. Nikonov, M. Garber
Conformational Transitions In The Gamma Subunit Of The Archaeal Translation Initiation Factor 2
Acta Crystallogr. , Sect. D V. 70 658 2014
[
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Hetero Components
(3, 35)
Info
All Hetero Components
1a: 1,2-ETHANEDIOL (EDOa)
1aa: 1,2-ETHANEDIOL (EDOaa)
1b: 1,2-ETHANEDIOL (EDOb)
1c: 1,2-ETHANEDIOL (EDOc)
1d: 1,2-ETHANEDIOL (EDOd)
1e: 1,2-ETHANEDIOL (EDOe)
1f: 1,2-ETHANEDIOL (EDOf)
1g: 1,2-ETHANEDIOL (EDOg)
1h: 1,2-ETHANEDIOL (EDOh)
1i: 1,2-ETHANEDIOL (EDOi)
1j: 1,2-ETHANEDIOL (EDOj)
1k: 1,2-ETHANEDIOL (EDOk)
1l: 1,2-ETHANEDIOL (EDOl)
1m: 1,2-ETHANEDIOL (EDOm)
1n: 1,2-ETHANEDIOL (EDOn)
1o: 1,2-ETHANEDIOL (EDOo)
1p: 1,2-ETHANEDIOL (EDOp)
1q: 1,2-ETHANEDIOL (EDOq)
1r: 1,2-ETHANEDIOL (EDOr)
1s: 1,2-ETHANEDIOL (EDOs)
1t: 1,2-ETHANEDIOL (EDOt)
1u: 1,2-ETHANEDIOL (EDOu)
1v: 1,2-ETHANEDIOL (EDOv)
1w: 1,2-ETHANEDIOL (EDOw)
1x: 1,2-ETHANEDIOL (EDOx)
1y: 1,2-ETHANEDIOL (EDOy)
1z: 1,2-ETHANEDIOL (EDOz)
2a: PHOSPHATE ION (PO4a)
2b: PHOSPHATE ION (PO4b)
2c: PHOSPHATE ION (PO4c)
2d: PHOSPHATE ION (PO4d)
3a: SULFATE ION (SO4a)
3b: SULFATE ION (SO4b)
3c: SULFATE ION (SO4c)
3d: SULFATE ION (SO4d)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
EDO
27
Ligand/Ion
1,2-ETHANEDIOL
2
PO4
4
Ligand/Ion
PHOSPHATE ION
3
SO4
4
Ligand/Ion
SULFATE ION
[
close Hetero Component info
]
Sites
(35, 35)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
30: DC3 (SOFTWARE)
31: DC4 (SOFTWARE)
32: DC5 (SOFTWARE)
33: DC6 (SOFTWARE)
34: DC7 (SOFTWARE)
35: DC8 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
PHE A:221 , ASP A:222 , LYS A:307 , ALA A:308 , HOH A:668
BINDING SITE FOR RESIDUE SO4 A 501
02
AC2
SOFTWARE
LYS A:188 , ARG A:330 , GLU A:414 , HOH A:665 , HOH A:855
BINDING SITE FOR RESIDUE SO4 A 502
03
AC3
SOFTWARE
LYS A:64 , TYR A:68 , LYS A:84 , HOH A:667 , HOH A:676
BINDING SITE FOR RESIDUE SO4 A 503
04
AC4
SOFTWARE
ASN A:55 , ARG A:88 , HOH A:646 , HOH A:679 , HOH A:831 , HOH A:844
BINDING SITE FOR RESIDUE SO4 A 504
05
AC5
SOFTWARE
LYS A:234 , SER A:277 , SER A:278 , HOH A:733 , HOH A:825
BINDING SITE FOR RESIDUE PO4 A 505
06
AC6
SOFTWARE
SER A:161 , ARG A:164 , HOH A:823 , HOH A:824
BINDING SITE FOR RESIDUE PO4 A 506
07
AC7
SOFTWARE
CYS A:62 , LYS A:63 , EDO A:511 , HOH A:682 , HOH A:740
BINDING SITE FOR RESIDUE PO4 A 507
08
AC8
SOFTWARE
TYR A:163 , LYS A:167 , PRO A:179 , ILE A:180 , HOH A:845
BINDING SITE FOR RESIDUE PO4 A 508
09
AC9
SOFTWARE
VAL A:58 , CYS A:59 , GLU A:60 , SER A:61 , GLU A:82 , PRO A:83
BINDING SITE FOR RESIDUE EDO A 509
10
BC1
SOFTWARE
GLY A:313 , VAL A:361 , SER A:364 , VAL A:386 , ALA A:387 , TRP A:389 , HOH A:758 , HOH A:760
BINDING SITE FOR RESIDUE EDO A 510
11
BC2
SOFTWARE
SER A:61 , CYS A:77 , GLY A:78 , PO4 A:507
BINDING SITE FOR RESIDUE EDO A 511
12
BC3
SOFTWARE
THR A:173 , TRP A:174
BINDING SITE FOR RESIDUE EDO A 512
13
BC4
SOFTWARE
ASN A:11 , ASP A:112 , ARG A:207 , ILE A:242 , ILE A:243 , GLY A:292
BINDING SITE FOR RESIDUE EDO A 513
14
BC5
SOFTWARE
ARG A:394 , HOH A:798
BINDING SITE FOR RESIDUE EDO A 514
15
BC6
SOFTWARE
LYS A:212 , GLN A:244 , TRP A:389
BINDING SITE FOR RESIDUE EDO A 515
16
BC7
SOFTWARE
ARG A:130 , ARG A:338
BINDING SITE FOR RESIDUE EDO A 516
17
BC8
SOFTWARE
SER A:73 , LYS A:75 , SER A:76 , EDO A:518 , HOH A:686
BINDING SITE FOR RESIDUE EDO A 517
18
BC9
SOFTWARE
SER A:73 , LYS A:75 , EDO A:517 , HOH A:702
BINDING SITE FOR RESIDUE EDO A 518
19
CC1
SOFTWARE
GLU A:355 , THR A:356 , HOH A:652 , HOH A:826
BINDING SITE FOR RESIDUE EDO A 519
20
CC2
SOFTWARE
THR A:46 , ARG A:280 , GLY A:282 , ALA A:296
BINDING SITE FOR RESIDUE EDO A 520
21
CC3
SOFTWARE
PRO A:182 , ASN A:190 , THR A:371 , HOH A:614 , HOH A:839
BINDING SITE FOR RESIDUE EDO A 521
22
CC4
SOFTWARE
GLN A:251 , GLU A:252 , HOH A:687
BINDING SITE FOR RESIDUE EDO A 522
23
CC5
SOFTWARE
GLY A:258 , LEU A:259 , ARG A:260 , ASN A:310 , ARG A:384
BINDING SITE FOR RESIDUE EDO A 523
24
CC6
SOFTWARE
SER A:61 , LYS A:84 , HOH A:739
BINDING SITE FOR RESIDUE EDO A 524
25
CC7
SOFTWARE
ASN A:391
BINDING SITE FOR RESIDUE EDO A 525
26
CC8
SOFTWARE
LEU A:105 , SER A:360 , VAL A:361 , GLY A:362 , VAL A:396 , EDO A:533 , HOH A:655
BINDING SITE FOR RESIDUE EDO A 526
27
CC9
SOFTWARE
CYS A:62 , LYS A:64 , HOH A:796 , HOH A:841
BINDING SITE FOR RESIDUE EDO A 527
28
DC1
SOFTWARE
SER A:363 , SER A:364 , THR A:365
BINDING SITE FOR RESIDUE EDO A 528
29
DC2
SOFTWARE
ILE A:32 , ALA A:52 , GLU A:53 , GLY A:282 , HOH A:806
BINDING SITE FOR RESIDUE EDO A 529
30
DC3
SOFTWARE
HIS A:17 , ASP A:19 , VAL A:118 , ALA A:119 , GLU A:122
BINDING SITE FOR RESIDUE EDO A 530
31
DC4
SOFTWARE
LYS A:212 , ALA A:321 , GLU A:322
BINDING SITE FOR RESIDUE EDO A 531
32
DC5
SOFTWARE
ASN A:190 , ILE A:191 , ASP A:192 , SER A:372 , LYS A:374 , GLU A:379 , HOH A:617
BINDING SITE FOR RESIDUE EDO A 532
33
DC6
SOFTWARE
ALA A:108 , MET A:111 , ILE A:139 , EDO A:526 , HOH A:790
BINDING SITE FOR RESIDUE EDO A 533
34
DC7
SOFTWARE
HIS A:20 , ASN A:149 , LYS A:150 , SER A:184 , ALA A:185 , LEU A:186 , HOH A:662
BINDING SITE FOR RESIDUE EDO A 534
35
DC8
SOFTWARE
GLN A:400 , ALA A:402
BINDING SITE FOR RESIDUE EDO A 535
[
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]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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Sorry, no Info available
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
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Sorry, no Info available
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(3, 3)
Info
All SCOP Domains
1a: SCOP_d4m2la3 (A:321-415)
2a: SCOP_d4m2la2 (A:207-320)
3a: SCOP_d4m2la1 (A:2-206)
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Classes
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(
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Elongation factor/aminomethyltransferase common domain
(82)
Superfamily
:
EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
(67)
Family
:
EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
(48)
Protein domain
:
Initiation factor eIF2 gamma subunit
(16)
Sulfolobus solfataricus [TaxId: 2287]
(10)
1a
d4m2la3
A:321-415
Fold
:
Reductase/isomerase/elongation factor common domain
(381)
Superfamily
:
Translation proteins
(218)
Family
:
Elongation factors
(77)
Protein domain
:
Initiation factor eIF2 gamma subunit, domain II
(16)
Sulfolobus solfataricus [TaxId: 2287]
(10)
2a
d4m2la2
A:207-320
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Superfamily
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Family
:
G proteins
(693)
Protein domain
:
Initiation factor eIF2 gamma subunit, N-terminal (G) domain
(16)
Sulfolobus solfataricus [TaxId: 2287]
(10)
3a
d4m2la1
A:2-206
[
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]
CATH Domains
(0, 0)
Info
all CATH domains
View:
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Sorry, no Info available
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
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Asymmetric Unit 1
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