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4M10
Asym. Unit
Info
Asym.Unit (805 KB)
Biol.Unit 1 (395 KB)
Biol.Unit 2 (394 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF MURINE CYCLOOXYGENASE-2 COMPLEX WITH ISOXICAM
Authors
:
S. Xu, D. J. Hermanson, S. Banerjee, K. Ghebreelasie, L. J. Marnett
Date
:
02 Aug 13 (Deposition) - 22 Jan 14 (Release) - 14 May 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.01
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Keywords
:
Nsaid, Cox, Dioxygenase, Peroxidase, Glycosylation, Oxidoreductase- Oxidoreductase Inhibitor Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. Xu, D. J. Hermanson, S. Banerjee, K. Ghebreselasie, G. M. Clayton, R. M. Garavito, L. J. Marnett
Oxicams Bind In A Novel Mode To The Cyclooxygenase Active Site Via A Two-Water-Mediated H-Bonding Network.
J. Biol. Chem. V. 289 6799 2014
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Hetero Components
(4, 28)
Info
All Hetero Components
1a: B-OCTYLGLUCOSIDE (BOGa)
1b: B-OCTYLGLUCOSIDE (BOGb)
1c: B-OCTYLGLUCOSIDE (BOGc)
1d: B-OCTYLGLUCOSIDE (BOGd)
2a: PROTOPORPHYRIN IX CONTAINING FE (HEMa)
2b: PROTOPORPHYRIN IX CONTAINING FE (HEMb)
2c: PROTOPORPHYRIN IX CONTAINING FE (HEMc)
2d: PROTOPORPHYRIN IX CONTAINING FE (HEMd)
3a: 4-HYDROXY-2-METHYL-N-(5-METHYL-1,2... (ICDa)
3b: 4-HYDROXY-2-METHYL-N-(5-METHYL-1,2... (ICDb)
3c: 4-HYDROXY-2-METHYL-N-(5-METHYL-1,2... (ICDc)
3d: 4-HYDROXY-2-METHYL-N-(5-METHYL-1,2... (ICDd)
4a: N-ACETYL-D-GLUCOSAMINE (NAGa)
4b: N-ACETYL-D-GLUCOSAMINE (NAGb)
4c: N-ACETYL-D-GLUCOSAMINE (NAGc)
4d: N-ACETYL-D-GLUCOSAMINE (NAGd)
4e: N-ACETYL-D-GLUCOSAMINE (NAGe)
4f: N-ACETYL-D-GLUCOSAMINE (NAGf)
4g: N-ACETYL-D-GLUCOSAMINE (NAGg)
4h: N-ACETYL-D-GLUCOSAMINE (NAGh)
4i: N-ACETYL-D-GLUCOSAMINE (NAGi)
4j: N-ACETYL-D-GLUCOSAMINE (NAGj)
4k: N-ACETYL-D-GLUCOSAMINE (NAGk)
4l: N-ACETYL-D-GLUCOSAMINE (NAGl)
4m: N-ACETYL-D-GLUCOSAMINE (NAGm)
4n: N-ACETYL-D-GLUCOSAMINE (NAGn)
4o: N-ACETYL-D-GLUCOSAMINE (NAGo)
4p: N-ACETYL-D-GLUCOSAMINE (NAGp)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BOG
4
Ligand/Ion
B-OCTYLGLUCOSIDE
2
HEM
4
Ligand/Ion
PROTOPORPHYRIN IX CONTAINING FE
3
ICD
4
Ligand/Ion
4-HYDROXY-2-METHYL-N-(5-METHYL-1,2-OXAZOL-3-YL)-2H-1,2-BENZOTHIAZINE-3-CARBOXAMIDE 1,1-DIOXIDE
4
NAG
16
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
[
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Sites
(24, 24)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ALA A:199 , GLN A:203 , HIS A:207 , PHE A:210 , LYS A:211 , THR A:212 , HIS A:214 , VAL A:295 , ASN A:382 , TYR A:385 , HIS A:386 , HIS A:388 , LEU A:391 , LEU A:408 , HOH A:952 , HOH A:1047 , HOH A:1149 , HOH A:1178
BINDING SITE FOR RESIDUE HEM A 705
02
AC2
SOFTWARE
VAL A:116 , LEU A:117 , ARG A:120 , ILE A:345 , VAL A:349 , LEU A:352 , PHE A:518 , ALA A:527 , SER A:530 , LEU A:531 , HOH A:951 , HOH A:1106
BINDING SITE FOR RESIDUE ICD A 706
03
AC3
SOFTWARE
TYR B:148 , ALA B:199 , GLN B:203 , HIS B:207 , PHE B:210 , LYS B:211 , THR B:212 , HIS B:214 , ASN B:382 , TYR B:385 , HIS B:386 , HIS B:388 , LEU B:391 , VAL B:447 , ALA B:450 , HOH B:864 , HOH B:978
BINDING SITE FOR RESIDUE HEM B 705
04
AC4
SOFTWARE
VAL B:116 , ARG B:120 , ILE B:345 , VAL B:349 , LEU B:352 , PHE B:518 , ALA B:527 , SER B:530 , HOH B:889 , HOH B:1087
BINDING SITE FOR RESIDUE ICD B 706
05
AC5
SOFTWARE
GLU A:179 , LEU A:183 , ARG A:185 , ILE A:442 , GLN A:445 , LYS B:180 , ARG B:184 , ARG B:185 , ARG B:438 , GLU B:486 , GLU B:490
BINDING SITE FOR RESIDUE BOG B 707
06
AC6
SOFTWARE
ASN B:87 , THR B:88 , TYR B:91
BINDING SITE FOR RESIDUE BOG B 708
07
AC7
SOFTWARE
TYR C:148 , ALA C:199 , GLN C:203 , HIS C:207 , PHE C:210 , LYS C:211 , THR C:212 , HIS C:214 , ASN C:382 , TYR C:385 , HIS C:386 , HIS C:388 , LEU C:391 , VAL C:447 , ALA C:450 , HOH C:831 , HOH C:1167
BINDING SITE FOR RESIDUE HEM C 705
08
AC8
SOFTWARE
VAL C:116 , ARG C:120 , ILE C:345 , VAL C:349 , LEU C:352 , PHE C:518 , ALA C:527 , SER C:530 , LEU C:531 , HOH C:898 , HOH C:1074
BINDING SITE FOR RESIDUE ICD C 706
09
AC9
SOFTWARE
ASN C:87 , TYR C:91 , PRO C:514 , HOH C:1140 , HOH C:1144 , HOH C:1166
BINDING SITE FOR RESIDUE BOG C 707
10
BC1
SOFTWARE
ALA D:199 , GLN D:203 , HIS D:207 , PHE D:210 , LYS D:211 , THR D:212 , HIS D:214 , VAL D:295 , ASN D:382 , TYR D:385 , HIS D:386 , HIS D:388 , LEU D:391 , VAL D:447 , HOH D:1061 , HOH D:1224
BINDING SITE FOR RESIDUE HEM D 705
11
BC2
SOFTWARE
MET D:113 , VAL D:116 , ARG D:120 , ILE D:345 , VAL D:349 , LEU D:352 , PHE D:518 , ALA D:527 , SER D:530 , LEU D:531 , LEU D:534 , HOH D:840 , HOH D:943 , HOH D:1247
BINDING SITE FOR RESIDUE ICD D 706
12
BC3
SOFTWARE
LYS C:180 , ARG C:184 , ARG C:185 , ARG C:438 , GLU C:486 , GLU C:490 , GLU D:179 , ARG D:184 , ARG D:185 , ILE D:442 , GLN D:445
BINDING SITE FOR RESIDUE BOG D 707
13
BC4
SOFTWARE
TYR A:55 , GLU A:67 , ASN A:68 , HOH A:982
BINDING SITE FOR MONO-SACCHARIDE NAG A 701 BOUND TO ASN A 68
14
BC5
SOFTWARE
GLU A:140 , ASN A:144 , TYR A:147 , ARG A:216 , HOH A:808 , HOH A:890 , HOH A:1184 , ASP B:239
BINDING SITE FOR CHAIN A OF SUGAR BOUND TO ASN A 144 RESIDUES 702 TO 703
15
BC6
SOFTWARE
GLN A:406 , ASN A:410 , SER A:412 , ILE A:413 , HOH A:1181
BINDING SITE FOR MONO-SACCHARIDE NAG A 704 BOUND TO ASN A 410
16
BC7
SOFTWARE
TYR B:55 , GLU B:67 , ASN B:68
BINDING SITE FOR MONO-SACCHARIDE NAG B 701 BOUND TO ASN B 68
17
BC8
SOFTWARE
ASP A:239 , GLU B:140 , ASN B:144 , TYR B:147 , ARG B:216 , HOH B:804 , HOH B:841 , HOH B:953 , HOH B:964
BINDING SITE FOR CHAIN B OF SUGAR BOUND TO ASN B 144 RESIDUES 702 TO 703
18
BC9
SOFTWARE
GLN B:406 , ASN B:410 , SER B:412 , ILE B:413 , HOH B:1108
BINDING SITE FOR MONO-SACCHARIDE NAG B 704 BOUND TO ASN B 410
19
CC1
SOFTWARE
TYR C:55 , GLU C:67 , ASN C:68 , HOH C:1175 , HOH C:1245
BINDING SITE FOR MONO-SACCHARIDE NAG C 701 BOUND TO ASN C 68
20
CC2
SOFTWARE
GLU C:140 , ASN C:144 , TYR C:147 , ARG C:216 , HOH C:807 , HOH C:905 , HOH C:933 , HOH C:971 , HOH C:1176
BINDING SITE FOR CHAIN C OF SUGAR BOUND TO ASN C 144 RESIDUES 702 TO 703
21
CC3
SOFTWARE
GLN C:406 , ASN C:410 , SER C:412 , ILE C:413
BINDING SITE FOR MONO-SACCHARIDE NAG C 704 BOUND TO ASN C 410
22
CC4
SOFTWARE
TYR D:55 , GLU D:67 , ASN D:68 , HOH D:1013
BINDING SITE FOR MONO-SACCHARIDE NAG D 701 BOUND TO ASN D 68
23
CC5
SOFTWARE
GLU D:140 , ASN D:144 , TYR D:147 , ARG D:216 , HOH D:827 , HOH D:913 , HOH D:989 , HOH D:1178
BINDING SITE FOR CHAIN D OF SUGAR BOUND TO ASN D 144 RESIDUES 702 TO 703
24
CC6
SOFTWARE
GLN D:406 , ASN D:410 , SER D:412 , ILE D:413
BINDING SITE FOR MONO-SACCHARIDE NAG D 704 BOUND TO ASN D 410
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
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Info
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
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CATH Domains
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Pfam Domains
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Info
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Atom Selection
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