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4M0K
Biol. Unit 1
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Asym.Unit (244 KB)
Biol.Unit 1 (120 KB)
Biol.Unit 2 (120 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF ADENINE PHOSPHORIBOSYLTRANSFERASE FROM RHODOTHERMUS MARINUS DSM 4252, NYSGRC TARGET 029775.
Authors
:
V. N. Malashkevich, R. Bhosle, R. Toro, B. Hillerich, A. Gizzi, S. Garfo A. Kar, M. K. Chan, J. Lafluer, H. Patel, B. Matikainen, S. Chamala, S. L A. Celikgil, G. Villegas, B. Evans, J. Love, A. Fiser, K. Khafizov, R. S J. B. Bonanno, S. C. Almo, New York Structural Genomics Research Consortium (Nysgrc)
Date
:
01 Aug 13 (Deposition) - 14 Aug 13 (Release) - 14 Aug 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.40
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Keywords
:
Structural Genomics, Protein Structure Initiative, Nysgrc, Adenine Phosphoribosyltransferase, Psi-Biology, New York Structural Genomics Research Consortium, Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
V. N. Malashkevich, R. Bhosle, R. Toro, B. Hillerich, A. Gizzi, S. Garforth, A. Kar, M. K. Chan, J. Lafluer, H. Patel, B. Matikainen, S. Chamala, S. Lim, A. Celikgil, G. Villegas, B. Evans, J. Love, A. Fiser, K. Khafizov, R. Seidel, J. B. Bonanno, S. C. Almo
Crystal Structure Of Adenine Phosphoribosyltransferase From Rhodothermus Marinus Dsm 4252, Nysgrc Target 029775.
To Be Published
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Hetero Components
(2, 6)
Info
All Hetero Components
1a: ADENOSINE MONOPHOSPHATE (AMPa)
1b: ADENOSINE MONOPHOSPHATE (AMPb)
1c: ADENOSINE MONOPHOSPHATE (AMPc)
1d: ADENOSINE MONOPHOSPHATE (AMPd)
2a: CALCIUM ION (CAa)
2b: CALCIUM ION (CAb)
2c: CALCIUM ION (CAc)
2d: CALCIUM ION (CAd)
3a: SELENOMETHIONINE (MSEa)
3b: SELENOMETHIONINE (MSEb)
3c: SELENOMETHIONINE (MSEc)
3d: SELENOMETHIONINE (MSEd)
3e: SELENOMETHIONINE (MSEe)
3f: SELENOMETHIONINE (MSEf)
3g: SELENOMETHIONINE (MSEg)
3h: SELENOMETHIONINE (MSEh)
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No.
Name
Count
Type
Full Name
1
AMP
2
Ligand/Ion
ADENOSINE MONOPHOSPHATE
2
CA
-1
Ligand/Ion
CALCIUM ION
3
MSE
4
Mod. Amino Acid
SELENOMETHIONINE
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Sites
(6, 6)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC6 (SOFTWARE)
6: AC8 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
GLN A:25 , PHE A:26 , LYS A:27 , GLU A:62 , ASP A:124 , ASP A:125 , VAL A:126 , ALA A:128 , THR A:129 , GLY A:130 , GLY A:131 , THR A:132 , LEU A:156 , HOH A:415 , HOH A:421 , HOH A:426 , HOH A:427 , HOH A:444 , HOH A:490 , HOH A:555
BINDING SITE FOR RESIDUE AMP A 300
2
AC2
SOFTWARE
ASP A:77 , HOH A:472 , HOH A:474 , HOH A:521 , HOH A:522
BINDING SITE FOR RESIDUE CA A 301
3
AC3
SOFTWARE
GLN B:25 , PHE B:26 , LYS B:27 , ASP B:124 , ASP B:125 , VAL B:126 , ALA B:128 , THR B:129 , GLY B:130 , GLY B:131 , THR B:132 , LEU B:156 , HOH B:402 , HOH B:407 , HOH B:416 , HOH B:417 , HOH B:451 , HOH B:480 , HOH B:488 , HOH B:490
BINDING SITE FOR RESIDUE AMP B 300
4
AC4
SOFTWARE
HOH B:456 , HOH B:466 , HOH B:478 , HOH B:495 , HOH B:544 , HOH B:548
BINDING SITE FOR RESIDUE CA B 301
5
AC6
SOFTWARE
GLN B:11 , HOH B:409 , HOH B:437 , GLU C:134 , HOH C:331 , HOH C:368
BINDING SITE FOR RESIDUE CA C 202
6
AC8
SOFTWARE
GLU A:134 , GLN D:11 , HOH D:427 , HOH D:464 , HOH D:496 , HOH D:498
BINDING SITE FOR RESIDUE CA D 301
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
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Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d4m0ka_ (A:)
1b: SCOP_d4m0kb_ (B:)
1c: SCOP_d4m0kc_ (C:)
1d: SCOP_d4m0kd_ (D:)
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Protein Domains
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Organisms
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Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
PRTase-like
(145)
Superfamily
:
PRTase-like
(145)
Family
:
automated matches
(39)
Protein domain
:
automated matches
(39)
Rhodothermus marinus [TaxId: 518766]
(1)
1a
d4m0ka_
A:
1b
d4m0kb_
B:
1c
d4m0kc_
C:
1d
d4m0kd_
D:
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CATH Domains
(0, 0)
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all CATH domains
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Pfam Domains
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Asymmetric Unit 1
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Asym.Unit (244 KB)
Header - Asym.Unit
Biol.Unit 1 (120 KB)
Header - Biol.Unit 1
Biol.Unit 2 (120 KB)
Header - Biol.Unit 2
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