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4LZB
Biol. Unit 3
Info
Asym.Unit (477 KB)
Biol.Unit 1 (89 KB)
Biol.Unit 2 (88 KB)
Biol.Unit 3 (83 KB)
Biol.Unit 4 (84 KB)
Biol.Unit 5 (85 KB)
Biol.Unit 6 (82 KB)
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(1)
Title
:
URACIL BINDING POCKET IN VACCINIA VIRUS URACIL DNA GLYCOSYLASE
Authors
:
N. Schormann, D. Chattopadhyay
Date
:
31 Jul 13 (Deposition) - 11 Dec 13 (Release) - 05 Feb 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.03
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L
Biol. Unit 1: A,F (1x)
Biol. Unit 2: B,E (1x)
Biol. Unit 3: C,K (1x)
Biol. Unit 4: D,H (1x)
Biol. Unit 5: G,J (1x)
Biol. Unit 6: I,L (1x)
Keywords
:
Alpha/Beta Dna Glycosylase Fold, Viral Processivity Factor, Dna Binding Component, Dna Repair, A20, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
N. Schormann, S. Banerjee, R. Ricciardi, D. Chattopadhyay
Structure Of The Uracil Complex Of Vaccinia Virus Uracil Dn Glycosylase.
Acta Crystallogr. , Sect. F V. 69 1328 2013
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Hetero Components
(2, 3)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
1b: CHLORIDE ION (CLb)
1c: CHLORIDE ION (CLc)
1d: CHLORIDE ION (CLd)
1e: CHLORIDE ION (CLe)
1f: CHLORIDE ION (CLf)
1g: CHLORIDE ION (CLg)
1h: CHLORIDE ION (CLh)
1i: CHLORIDE ION (CLi)
1j: CHLORIDE ION (CLj)
1k: CHLORIDE ION (CLk)
1l: CHLORIDE ION (CLl)
1m: CHLORIDE ION (CLm)
1n: CHLORIDE ION (CLn)
2a: DIMETHYL SULFOXIDE (DMSa)
2b: DIMETHYL SULFOXIDE (DMSb)
2c: DIMETHYL SULFOXIDE (DMSc)
2d: DIMETHYL SULFOXIDE (DMSd)
2e: DIMETHYL SULFOXIDE (DMSe)
2f: DIMETHYL SULFOXIDE (DMSf)
2g: DIMETHYL SULFOXIDE (DMSg)
2h: DIMETHYL SULFOXIDE (DMSh)
2i: DIMETHYL SULFOXIDE (DMSi)
2j: DIMETHYL SULFOXIDE (DMSj)
3a: 1,2-ETHANEDIOL (EDOa)
3b: 1,2-ETHANEDIOL (EDOb)
3c: 1,2-ETHANEDIOL (EDOc)
3d: 1,2-ETHANEDIOL (EDOd)
3e: 1,2-ETHANEDIOL (EDOe)
3f: 1,2-ETHANEDIOL (EDOf)
3g: 1,2-ETHANEDIOL (EDOg)
3h: 1,2-ETHANEDIOL (EDOh)
3i: 1,2-ETHANEDIOL (EDOi)
3j: 1,2-ETHANEDIOL (EDOj)
3k: 1,2-ETHANEDIOL (EDOk)
3l: 1,2-ETHANEDIOL (EDOl)
3m: 1,2-ETHANEDIOL (EDOm)
3n: 1,2-ETHANEDIOL (EDOn)
3o: 1,2-ETHANEDIOL (EDOo)
3p: 1,2-ETHANEDIOL (EDOp)
4a: POTASSIUM ION (Ka)
4b: POTASSIUM ION (Kb)
4c: POTASSIUM ION (Kc)
4d: POTASSIUM ION (Kd)
4e: POTASSIUM ION (Ke)
4f: POTASSIUM ION (Kf)
4g: POTASSIUM ION (Kg)
4h: POTASSIUM ION (Kh)
4i: POTASSIUM ION (Ki)
4j: POTASSIUM ION (Kj)
5a: URACIL (URAa)
5b: URACIL (URAb)
5c: URACIL (URAc)
5d: URACIL (URAd)
5e: URACIL (URAe)
5f: URACIL (URAf)
5g: URACIL (URAg)
5h: URACIL (URAh)
5i: URACIL (URAi)
5j: URACIL (URAj)
5k: URACIL (URAk)
5l: URACIL (URAl)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CL
-1
Ligand/Ion
CHLORIDE ION
2
DMS
-1
Ligand/Ion
DIMETHYL SULFOXIDE
3
EDO
1
Ligand/Ion
1,2-ETHANEDIOL
4
K
-1
Ligand/Ion
POTASSIUM ION
5
URA
2
Ligand/Ion
URACIL
[
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Sites
(6, 6)
Info
All Sites
1: CC3 (SOFTWARE)
2: CC4 (SOFTWARE)
3: CC5 (SOFTWARE)
4: GC4 (SOFTWARE)
5: GC5 (SOFTWARE)
6: GC6 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
CC3
SOFTWARE
ASP C:68 , PRO C:69 , THR C:130 , HOH C:492 , HOH C:493
BINDING SITE FOR RESIDUE K C 301
2
CC4
SOFTWARE
LYS C:160 , TYR C:180 , HIS C:181
BINDING SITE FOR RESIDUE CL C 302
3
CC5
SOFTWARE
GLY C:66 , ILE C:67 , ASP C:68 , TYR C:70 , PRO C:78 , PHE C:79 , ASN C:120 , HIS C:181 , HOH C:412 , HOH C:493
BINDING SITE FOR RESIDUE URA C 303
4
GC4
SOFTWARE
LYS K:160 , TYR K:180 , HIS K:181 , ALA K:184
BINDING SITE FOR RESIDUE CL K 301
5
GC5
SOFTWARE
ASP K:162 , ILE K:166 , LYS K:169
BINDING SITE FOR RESIDUE EDO K 302
6
GC6
SOFTWARE
GLY K:66 , ILE K:67 , ASP K:68 , TYR K:70 , PRO K:78 , PHE K:79 , ASN K:120 , HIS K:181 , HOH K:424 , HOH K:460
BINDING SITE FOR RESIDUE URA K 303
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(0, 0)
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CATH Domains
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Pfam Domains
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Asymmetric Unit 1
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Asym.Unit (477 KB)
Header - Asym.Unit
Biol.Unit 1 (89 KB)
Header - Biol.Unit 1
Biol.Unit 2 (88 KB)
Header - Biol.Unit 2
Biol.Unit 3 (83 KB)
Header - Biol.Unit 3
Biol.Unit 4 (84 KB)
Header - Biol.Unit 4
Biol.Unit 5 (85 KB)
Header - Biol.Unit 5
Biol.Unit 6 (82 KB)
Header - Biol.Unit 6
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