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4LZB
Biol. Unit 2
Info
Asym.Unit (477 KB)
Biol.Unit 1 (89 KB)
Biol.Unit 2 (88 KB)
Biol.Unit 3 (83 KB)
Biol.Unit 4 (84 KB)
Biol.Unit 5 (85 KB)
Biol.Unit 6 (82 KB)
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(1)
Title
:
URACIL BINDING POCKET IN VACCINIA VIRUS URACIL DNA GLYCOSYLASE
Authors
:
N. Schormann, D. Chattopadhyay
Date
:
31 Jul 13 (Deposition) - 11 Dec 13 (Release) - 05 Feb 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.03
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L
Biol. Unit 1: A,F (1x)
Biol. Unit 2: B,E (1x)
Biol. Unit 3: C,K (1x)
Biol. Unit 4: D,H (1x)
Biol. Unit 5: G,J (1x)
Biol. Unit 6: I,L (1x)
Keywords
:
Alpha/Beta Dna Glycosylase Fold, Viral Processivity Factor, Dna Binding Component, Dna Repair, A20, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
N. Schormann, S. Banerjee, R. Ricciardi, D. Chattopadhyay
Structure Of The Uracil Complex Of Vaccinia Virus Uracil Dn Glycosylase.
Acta Crystallogr. , Sect. F V. 69 1328 2013
[
close entry info
]
Hetero Components
(3, 10)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
1b: CHLORIDE ION (CLb)
1c: CHLORIDE ION (CLc)
1d: CHLORIDE ION (CLd)
1e: CHLORIDE ION (CLe)
1f: CHLORIDE ION (CLf)
1g: CHLORIDE ION (CLg)
1h: CHLORIDE ION (CLh)
1i: CHLORIDE ION (CLi)
1j: CHLORIDE ION (CLj)
1k: CHLORIDE ION (CLk)
1l: CHLORIDE ION (CLl)
1m: CHLORIDE ION (CLm)
1n: CHLORIDE ION (CLn)
2a: DIMETHYL SULFOXIDE (DMSa)
2b: DIMETHYL SULFOXIDE (DMSb)
2c: DIMETHYL SULFOXIDE (DMSc)
2d: DIMETHYL SULFOXIDE (DMSd)
2e: DIMETHYL SULFOXIDE (DMSe)
2f: DIMETHYL SULFOXIDE (DMSf)
2g: DIMETHYL SULFOXIDE (DMSg)
2h: DIMETHYL SULFOXIDE (DMSh)
2i: DIMETHYL SULFOXIDE (DMSi)
2j: DIMETHYL SULFOXIDE (DMSj)
3a: 1,2-ETHANEDIOL (EDOa)
3b: 1,2-ETHANEDIOL (EDOb)
3c: 1,2-ETHANEDIOL (EDOc)
3d: 1,2-ETHANEDIOL (EDOd)
3e: 1,2-ETHANEDIOL (EDOe)
3f: 1,2-ETHANEDIOL (EDOf)
3g: 1,2-ETHANEDIOL (EDOg)
3h: 1,2-ETHANEDIOL (EDOh)
3i: 1,2-ETHANEDIOL (EDOi)
3j: 1,2-ETHANEDIOL (EDOj)
3k: 1,2-ETHANEDIOL (EDOk)
3l: 1,2-ETHANEDIOL (EDOl)
3m: 1,2-ETHANEDIOL (EDOm)
3n: 1,2-ETHANEDIOL (EDOn)
3o: 1,2-ETHANEDIOL (EDOo)
3p: 1,2-ETHANEDIOL (EDOp)
4a: POTASSIUM ION (Ka)
4b: POTASSIUM ION (Kb)
4c: POTASSIUM ION (Kc)
4d: POTASSIUM ION (Kd)
4e: POTASSIUM ION (Ke)
4f: POTASSIUM ION (Kf)
4g: POTASSIUM ION (Kg)
4h: POTASSIUM ION (Kh)
4i: POTASSIUM ION (Ki)
4j: POTASSIUM ION (Kj)
5a: URACIL (URAa)
5b: URACIL (URAb)
5c: URACIL (URAc)
5d: URACIL (URAd)
5e: URACIL (URAe)
5f: URACIL (URAf)
5g: URACIL (URAg)
5h: URACIL (URAh)
5i: URACIL (URAi)
5j: URACIL (URAj)
5k: URACIL (URAk)
5l: URACIL (URAl)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CL
-1
Ligand/Ion
CHLORIDE ION
2
DMS
4
Ligand/Ion
DIMETHYL SULFOXIDE
3
EDO
4
Ligand/Ion
1,2-ETHANEDIOL
4
K
-1
Ligand/Ion
POTASSIUM ION
5
URA
2
Ligand/Ion
URACIL
[
close Hetero Component info
]
Sites
(20, 20)
Info
All Sites
01: AC6 (SOFTWARE)
02: AC9 (SOFTWARE)
03: BC1 (SOFTWARE)
04: BC2 (SOFTWARE)
05: BC3 (SOFTWARE)
06: BC4 (SOFTWARE)
07: BC5 (SOFTWARE)
08: BC6 (SOFTWARE)
09: BC7 (SOFTWARE)
10: BC8 (SOFTWARE)
11: BC9 (SOFTWARE)
12: CC1 (SOFTWARE)
13: CC2 (SOFTWARE)
14: DC2 (SOFTWARE)
15: DC3 (SOFTWARE)
16: DC4 (SOFTWARE)
17: DC5 (SOFTWARE)
18: DC6 (SOFTWARE)
19: DC7 (SOFTWARE)
20: DC8 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC6
SOFTWARE
GLU A:190 , HOH A:468 , HOH E:456
BINDING SITE FOR RESIDUE EDO A 306
02
AC9
SOFTWARE
LYS B:160 , ARG B:167 , ILE B:177 , VAL B:178 , HOH B:430 , THR E:175 , LEU E:204
BINDING SITE FOR RESIDUE DMS B 301
03
BC1
SOFTWARE
THR B:175 , LEU B:204 , ARG E:167 , VAL E:178
BINDING SITE FOR RESIDUE DMS B 302
04
BC2
SOFTWARE
ILE B:67 , TYR B:121 , ASP B:162 , ILE B:166 , LYS B:169 , HOH B:468
BINDING SITE FOR RESIDUE DMS B 303
05
BC3
SOFTWARE
THR B:149 , VAL B:152 , PRO B:173 , EDO B:309 , HOH B:420 , HOH F:444
BINDING SITE FOR RESIDUE K B 304
06
BC4
SOFTWARE
ASP B:68 , PRO B:69 , HOH B:596
BINDING SITE FOR RESIDUE K B 305
07
BC5
SOFTWARE
ARG B:167 , THR B:176 , ARG E:167 , THR E:176 , HOH E:406
BINDING SITE FOR RESIDUE CL B 306
08
BC6
SOFTWARE
LYS B:160 , TYR B:180 , HIS B:181
BINDING SITE FOR RESIDUE CL B 307
09
BC7
SOFTWARE
ARG B:61 , LYS B:207 , ALA B:208 , HOH F:476
BINDING SITE FOR RESIDUE CL B 308
10
BC8
SOFTWARE
SER B:153 , PRO B:173 , ASP B:205 , K B:304 , HOH E:574
BINDING SITE FOR RESIDUE EDO B 309
11
BC9
SOFTWARE
ILE B:103 , TYR B:105 , HOH B:548
BINDING SITE FOR RESIDUE EDO B 310
12
CC1
SOFTWARE
ARG B:98 , LEU B:99
BINDING SITE FOR RESIDUE EDO B 311
13
CC2
SOFTWARE
GLY B:66 , ILE B:67 , ASP B:68 , TYR B:70 , PRO B:78 , PHE B:79 , ASN B:120 , HIS B:181 , HOH B:402
BINDING SITE FOR RESIDUE URA B 312
14
DC2
SOFTWARE
GLY E:159 , LYS E:160 , THR E:161 , ASP E:162
BINDING SITE FOR RESIDUE DMS E 301
15
DC3
SOFTWARE
THR E:149 , VAL E:152 , PRO E:173 , HOH E:567 , HOH E:568
BINDING SITE FOR RESIDUE K E 302
16
DC4
SOFTWARE
ASP E:68 , PRO E:69 , URA E:307 , HOH E:571 , HOH E:572 , HOH E:573
BINDING SITE FOR RESIDUE K E 303
17
DC5
SOFTWARE
LYS E:160 , TYR E:180 , HIS E:181
BINDING SITE FOR RESIDUE CL E 304
18
DC6
SOFTWARE
TYR E:70 , SER E:88 , HOH E:576
BINDING SITE FOR RESIDUE CL E 305
19
DC7
SOFTWARE
TYR E:105
BINDING SITE FOR RESIDUE EDO E 306
20
DC8
SOFTWARE
GLY E:66 , ILE E:67 , ASP E:68 , TYR E:70 , PRO E:78 , PHE E:79 , ASN E:120 , HIS E:181 , K E:303 , HOH E:432 , HOH E:571
BINDING SITE FOR RESIDUE URA E 307
[
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]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
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Sorry, no Info available
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PROSITE Patterns/Profiles
(, 0)
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;
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End label:
Sorry, no Info available
[
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Exons
(0, 0)
Info
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(0, 0)
Info
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Sorry, no Info available
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CATH Domains
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Info
all CATH domains
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Sorry, no Info available
[
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Pfam Domains
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Info
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Sorry, no Info available
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Protein & NOT Site
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Asymmetric Unit 1
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Asym.Unit (477 KB)
Header - Asym.Unit
Biol.Unit 1 (89 KB)
Header - Biol.Unit 1
Biol.Unit 2 (88 KB)
Header - Biol.Unit 2
Biol.Unit 3 (83 KB)
Header - Biol.Unit 3
Biol.Unit 4 (84 KB)
Header - Biol.Unit 4
Biol.Unit 5 (85 KB)
Header - Biol.Unit 5
Biol.Unit 6 (82 KB)
Header - Biol.Unit 6
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