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4LZB
Asym. Unit
Info
Asym.Unit (477 KB)
Biol.Unit 1 (89 KB)
Biol.Unit 2 (88 KB)
Biol.Unit 3 (83 KB)
Biol.Unit 4 (84 KB)
Biol.Unit 5 (85 KB)
Biol.Unit 6 (82 KB)
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(1)
Title
:
URACIL BINDING POCKET IN VACCINIA VIRUS URACIL DNA GLYCOSYLASE
Authors
:
N. Schormann, D. Chattopadhyay
Date
:
31 Jul 13 (Deposition) - 11 Dec 13 (Release) - 05 Feb 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.03
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L
Biol. Unit 1: A,F (1x)
Biol. Unit 2: B,E (1x)
Biol. Unit 3: C,K (1x)
Biol. Unit 4: D,H (1x)
Biol. Unit 5: G,J (1x)
Biol. Unit 6: I,L (1x)
Keywords
:
Alpha/Beta Dna Glycosylase Fold, Viral Processivity Factor, Dna Binding Component, Dna Repair, A20, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
N. Schormann, S. Banerjee, R. Ricciardi, D. Chattopadhyay
Structure Of The Uracil Complex Of Vaccinia Virus Uracil Dn Glycosylase.
Acta Crystallogr. , Sect. F V. 69 1328 2013
[
close entry info
]
Hetero Components
(5, 62)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
1b: CHLORIDE ION (CLb)
1c: CHLORIDE ION (CLc)
1d: CHLORIDE ION (CLd)
1e: CHLORIDE ION (CLe)
1f: CHLORIDE ION (CLf)
1g: CHLORIDE ION (CLg)
1h: CHLORIDE ION (CLh)
1i: CHLORIDE ION (CLi)
1j: CHLORIDE ION (CLj)
1k: CHLORIDE ION (CLk)
1l: CHLORIDE ION (CLl)
1m: CHLORIDE ION (CLm)
1n: CHLORIDE ION (CLn)
2a: DIMETHYL SULFOXIDE (DMSa)
2b: DIMETHYL SULFOXIDE (DMSb)
2c: DIMETHYL SULFOXIDE (DMSc)
2d: DIMETHYL SULFOXIDE (DMSd)
2e: DIMETHYL SULFOXIDE (DMSe)
2f: DIMETHYL SULFOXIDE (DMSf)
2g: DIMETHYL SULFOXIDE (DMSg)
2h: DIMETHYL SULFOXIDE (DMSh)
2i: DIMETHYL SULFOXIDE (DMSi)
2j: DIMETHYL SULFOXIDE (DMSj)
3a: 1,2-ETHANEDIOL (EDOa)
3b: 1,2-ETHANEDIOL (EDOb)
3c: 1,2-ETHANEDIOL (EDOc)
3d: 1,2-ETHANEDIOL (EDOd)
3e: 1,2-ETHANEDIOL (EDOe)
3f: 1,2-ETHANEDIOL (EDOf)
3g: 1,2-ETHANEDIOL (EDOg)
3h: 1,2-ETHANEDIOL (EDOh)
3i: 1,2-ETHANEDIOL (EDOi)
3j: 1,2-ETHANEDIOL (EDOj)
3k: 1,2-ETHANEDIOL (EDOk)
3l: 1,2-ETHANEDIOL (EDOl)
3m: 1,2-ETHANEDIOL (EDOm)
3n: 1,2-ETHANEDIOL (EDOn)
3o: 1,2-ETHANEDIOL (EDOo)
3p: 1,2-ETHANEDIOL (EDOp)
4a: POTASSIUM ION (Ka)
4b: POTASSIUM ION (Kb)
4c: POTASSIUM ION (Kc)
4d: POTASSIUM ION (Kd)
4e: POTASSIUM ION (Ke)
4f: POTASSIUM ION (Kf)
4g: POTASSIUM ION (Kg)
4h: POTASSIUM ION (Kh)
4i: POTASSIUM ION (Ki)
4j: POTASSIUM ION (Kj)
5a: URACIL (URAa)
5b: URACIL (URAb)
5c: URACIL (URAc)
5d: URACIL (URAd)
5e: URACIL (URAe)
5f: URACIL (URAf)
5g: URACIL (URAg)
5h: URACIL (URAh)
5i: URACIL (URAi)
5j: URACIL (URAj)
5k: URACIL (URAk)
5l: URACIL (URAl)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CL
14
Ligand/Ion
CHLORIDE ION
2
DMS
10
Ligand/Ion
DIMETHYL SULFOXIDE
3
EDO
16
Ligand/Ion
1,2-ETHANEDIOL
4
K
10
Ligand/Ion
POTASSIUM ION
5
URA
12
Ligand/Ion
URACIL
[
close Hetero Component info
]
Sites
(62, 62)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
30: DC3 (SOFTWARE)
31: DC4 (SOFTWARE)
32: DC5 (SOFTWARE)
33: DC6 (SOFTWARE)
34: DC7 (SOFTWARE)
35: DC8 (SOFTWARE)
36: DC9 (SOFTWARE)
37: EC1 (SOFTWARE)
38: EC2 (SOFTWARE)
39: EC3 (SOFTWARE)
40: EC4 (SOFTWARE)
41: EC5 (SOFTWARE)
42: EC6 (SOFTWARE)
43: EC7 (SOFTWARE)
44: EC8 (SOFTWARE)
45: EC9 (SOFTWARE)
46: FC1 (SOFTWARE)
47: FC2 (SOFTWARE)
48: FC3 (SOFTWARE)
49: FC4 (SOFTWARE)
50: FC5 (SOFTWARE)
51: FC6 (SOFTWARE)
52: FC7 (SOFTWARE)
53: FC8 (SOFTWARE)
54: FC9 (SOFTWARE)
55: GC1 (SOFTWARE)
56: GC2 (SOFTWARE)
57: GC3 (SOFTWARE)
58: GC4 (SOFTWARE)
59: GC5 (SOFTWARE)
60: GC6 (SOFTWARE)
61: GC7 (SOFTWARE)
62: GC8 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
LEU A:38 , ARG A:39 , ASP A:40 , GLU A:41 , HOH A:616
BINDING SITE FOR RESIDUE DMS A 301
02
AC2
SOFTWARE
ASP A:68 , PRO A:69 , URA A:308 , HOH A:495 , HOH A:546 , HOH A:631
BINDING SITE FOR RESIDUE K A 302
03
AC3
SOFTWARE
LYS A:160 , TYR A:180 , HIS A:181
BINDING SITE FOR RESIDUE CL A 303
04
AC4
SOFTWARE
TYR A:70 , SER A:88
BINDING SITE FOR RESIDUE CL A 304
05
AC5
SOFTWARE
ILE A:103 , TYR A:105
BINDING SITE FOR RESIDUE EDO A 305
06
AC6
SOFTWARE
GLU A:190 , HOH A:468 , HOH E:456
BINDING SITE FOR RESIDUE EDO A 306
07
AC7
SOFTWARE
ASP A:192 , ARG A:193 , HOH A:563 , GLU F:203 , ASN F:206 , HOH F:575
BINDING SITE FOR RESIDUE EDO A 307
08
AC8
SOFTWARE
GLY A:66 , ILE A:67 , ASP A:68 , TYR A:70 , PRO A:78 , PHE A:79 , ASN A:120 , HIS A:181 , K A:302 , HOH A:412
BINDING SITE FOR RESIDUE URA A 308
09
AC9
SOFTWARE
LYS B:160 , ARG B:167 , ILE B:177 , VAL B:178 , HOH B:430 , THR E:175 , LEU E:204
BINDING SITE FOR RESIDUE DMS B 301
10
BC1
SOFTWARE
THR B:175 , LEU B:204 , ARG E:167 , VAL E:178
BINDING SITE FOR RESIDUE DMS B 302
11
BC2
SOFTWARE
ILE B:67 , TYR B:121 , ASP B:162 , ILE B:166 , LYS B:169 , HOH B:468
BINDING SITE FOR RESIDUE DMS B 303
12
BC3
SOFTWARE
THR B:149 , VAL B:152 , PRO B:173 , EDO B:309 , HOH B:420 , HOH F:444
BINDING SITE FOR RESIDUE K B 304
13
BC4
SOFTWARE
ASP B:68 , PRO B:69 , HOH B:596
BINDING SITE FOR RESIDUE K B 305
14
BC5
SOFTWARE
ARG B:167 , THR B:176 , ARG E:167 , THR E:176 , HOH E:406
BINDING SITE FOR RESIDUE CL B 306
15
BC6
SOFTWARE
LYS B:160 , TYR B:180 , HIS B:181
BINDING SITE FOR RESIDUE CL B 307
16
BC7
SOFTWARE
ARG B:61 , LYS B:207 , ALA B:208 , HOH F:476
BINDING SITE FOR RESIDUE CL B 308
17
BC8
SOFTWARE
SER B:153 , PRO B:173 , ASP B:205 , K B:304 , HOH E:574
BINDING SITE FOR RESIDUE EDO B 309
18
BC9
SOFTWARE
ILE B:103 , TYR B:105 , HOH B:548
BINDING SITE FOR RESIDUE EDO B 310
19
CC1
SOFTWARE
ARG B:98 , LEU B:99
BINDING SITE FOR RESIDUE EDO B 311
20
CC2
SOFTWARE
GLY B:66 , ILE B:67 , ASP B:68 , TYR B:70 , PRO B:78 , PHE B:79 , ASN B:120 , HIS B:181 , HOH B:402
BINDING SITE FOR RESIDUE URA B 312
21
CC3
SOFTWARE
ASP C:68 , PRO C:69 , THR C:130 , HOH C:492 , HOH C:493
BINDING SITE FOR RESIDUE K C 301
22
CC4
SOFTWARE
LYS C:160 , TYR C:180 , HIS C:181
BINDING SITE FOR RESIDUE CL C 302
23
CC5
SOFTWARE
GLY C:66 , ILE C:67 , ASP C:68 , TYR C:70 , PRO C:78 , PHE C:79 , ASN C:120 , HIS C:181 , HOH C:412 , HOH C:493
BINDING SITE FOR RESIDUE URA C 303
24
CC6
SOFTWARE
ASP D:68 , PRO D:69 , URA D:305 , HOH D:495
BINDING SITE FOR RESIDUE K D 301
25
CC7
SOFTWARE
LYS D:160 , TYR D:180 , HIS D:181
BINDING SITE FOR RESIDUE CL D 302
26
CC8
SOFTWARE
PHE D:84 , TYR D:105 , LYS D:106
BINDING SITE FOR RESIDUE EDO D 303
27
CC9
SOFTWARE
THR D:149 , LYS D:150 , HIS D:151 , VAL D:152 , VAL D:174 , ASP G:186
BINDING SITE FOR RESIDUE EDO D 304
28
DC1
SOFTWARE
GLY D:66 , ILE D:67 , ASP D:68 , TYR D:70 , PRO D:78 , PHE D:79 , ASN D:120 , HIS D:181 , K D:301 , HOH D:408
BINDING SITE FOR RESIDUE URA D 305
29
DC2
SOFTWARE
GLY E:159 , LYS E:160 , THR E:161 , ASP E:162
BINDING SITE FOR RESIDUE DMS E 301
30
DC3
SOFTWARE
THR E:149 , VAL E:152 , PRO E:173 , HOH E:567 , HOH E:568
BINDING SITE FOR RESIDUE K E 302
31
DC4
SOFTWARE
ASP E:68 , PRO E:69 , URA E:307 , HOH E:571 , HOH E:572 , HOH E:573
BINDING SITE FOR RESIDUE K E 303
32
DC5
SOFTWARE
LYS E:160 , TYR E:180 , HIS E:181
BINDING SITE FOR RESIDUE CL E 304
33
DC6
SOFTWARE
TYR E:70 , SER E:88 , HOH E:576
BINDING SITE FOR RESIDUE CL E 305
34
DC7
SOFTWARE
TYR E:105
BINDING SITE FOR RESIDUE EDO E 306
35
DC8
SOFTWARE
GLY E:66 , ILE E:67 , ASP E:68 , TYR E:70 , PRO E:78 , PHE E:79 , ASN E:120 , HIS E:181 , K E:303 , HOH E:432 , HOH E:571
BINDING SITE FOR RESIDUE URA E 307
36
DC9
SOFTWARE
ILE F:67 , TYR F:121 , ASP F:162 , ASN F:165 , LYS F:169
BINDING SITE FOR RESIDUE DMS F 301
37
EC1
SOFTWARE
ASP F:68 , PRO F:69 , THR F:130 , URA F:305 , HOH F:584
BINDING SITE FOR RESIDUE K F 302
38
EC2
SOFTWARE
GLY F:159 , LYS F:160 , HIS F:181 , HOH F:450
BINDING SITE FOR RESIDUE CL F 303
39
EC3
SOFTWARE
ILE F:103 , TYR F:105
BINDING SITE FOR RESIDUE EDO F 304
40
EC4
SOFTWARE
GLY F:66 , ILE F:67 , ASP F:68 , TYR F:70 , PRO F:78 , PHE F:79 , ASN F:120 , K F:302 , HOH F:409
BINDING SITE FOR RESIDUE URA F 305
41
EC5
SOFTWARE
TYR G:70 , SER G:88 , HOH G:446
BINDING SITE FOR RESIDUE CL G 301
42
EC6
SOFTWARE
TYR G:121 , TYR G:122 , ASP G:162 , HOH G:428
BINDING SITE FOR RESIDUE DMS G 302
43
EC7
SOFTWARE
ASP G:68 , PRO G:69 , URA G:306 , HOH G:539 , HOH G:540
BINDING SITE FOR RESIDUE K G 303
44
EC8
SOFTWARE
ILE G:103 , TYR G:105
BINDING SITE FOR RESIDUE EDO G 304
45
EC9
SOFTWARE
LYS G:160 , TYR G:180 , HIS G:181
BINDING SITE FOR RESIDUE CL G 305
46
FC1
SOFTWARE
GLY G:66 , ILE G:67 , ASP G:68 , TYR G:70 , PRO G:78 , PHE G:79 , ASN G:120 , HIS G:181 , K G:303 , HOH G:405 , HOH G:540
BINDING SITE FOR RESIDUE URA G 306
47
FC2
SOFTWARE
GLU G:32 , SER G:35 , TRP G:36
BINDING SITE FOR RESIDUE EDO G 307
48
FC3
SOFTWARE
LYS H:160 , TYR H:180 , HIS H:181
BINDING SITE FOR RESIDUE CL H 301
49
FC4
SOFTWARE
ILE D:197 , THR H:175 , LEU H:201 , ASP H:205
BINDING SITE FOR RESIDUE DMS H 302
50
FC5
SOFTWARE
TYR H:121 , TYR H:122 , ASP H:162 , ASN H:165 , ILE H:166 , LYS H:169
BINDING SITE FOR RESIDUE DMS H 303
51
FC6
SOFTWARE
GLY H:66 , ILE H:67 , ASP H:68 , TYR H:70 , PRO H:78 , PHE H:79 , ASN H:120 , HIS H:181
BINDING SITE FOR RESIDUE URA H 304
52
FC7
SOFTWARE
ILE I:103 , TYR I:105
BINDING SITE FOR RESIDUE EDO I 301
53
FC8
SOFTWARE
TYR I:121 , TYR I:122 , ASP I:162 , PHE I:163 , ILE I:166
BINDING SITE FOR RESIDUE EDO I 302
54
FC9
SOFTWARE
GLY I:66 , ILE I:67 , ASP I:68 , TYR I:70 , PRO I:78 , PHE I:79 , ASN I:120 , HIS I:181 , HOH I:410
BINDING SITE FOR RESIDUE URA I 303
55
GC1
SOFTWARE
GLY J:66 , ILE J:67 , ASP J:68 , TYR J:70 , PRO J:78 , PHE J:79 , ASN J:120 , HIS J:181 , K J:303 , HOH J:415
BINDING SITE FOR RESIDUE URA J 301
56
GC2
SOFTWARE
TYR J:121 , ASP J:162 , ASN J:165 , LYS J:169
BINDING SITE FOR RESIDUE DMS J 302
57
GC3
SOFTWARE
ASP J:68 , PRO J:69 , THR J:130 , URA J:301 , HOH J:505 , HOH J:506 , HOH J:507
BINDING SITE FOR RESIDUE K J 303
58
GC4
SOFTWARE
LYS K:160 , TYR K:180 , HIS K:181 , ALA K:184
BINDING SITE FOR RESIDUE CL K 301
59
GC5
SOFTWARE
ASP K:162 , ILE K:166 , LYS K:169
BINDING SITE FOR RESIDUE EDO K 302
60
GC6
SOFTWARE
GLY K:66 , ILE K:67 , ASP K:68 , TYR K:70 , PRO K:78 , PHE K:79 , ASN K:120 , HIS K:181 , HOH K:424 , HOH K:460
BINDING SITE FOR RESIDUE URA K 303
61
GC7
SOFTWARE
TYR L:121 , TYR L:122 , ASP L:162 , LYS L:169
BINDING SITE FOR RESIDUE EDO L 301
62
GC8
SOFTWARE
GLY L:66 , ILE L:67 , ASP L:68 , TYR L:70 , PRO L:78 , PHE L:79 , ASN L:120 , HIS L:181 , HOH L:416 , HOH L:418
BINDING SITE FOR RESIDUE URA L 302
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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[
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