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4LYI
Asym. Unit
Info
Asym.Unit (55 KB)
Biol.Unit 1 (49 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF APO-BRD4(1)
Authors
:
D. Wohlwend
Date
:
31 Jul 13 (Deposition) - 15 Jan 14 (Release) - 15 Jan 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.30
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Bromodomain, Epigenetic Reader Protein, Acetylated Lysin, Histone Tail, Nucleus, Protein Binding
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
X. Lucas, D. Wohlwend, M. Hugle, K. Schmidtkunz, S. Gerhardt, R. Schule, M. Jung, O. Einsle, S. Gunther
4-Acyl Pyrroles: Mimicking Acetylated Lysines In Histone Code Reading.
Angew. Chem. Int. Ed. Engl. V. 52 14055 2013
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Hetero Components
(4, 13)
Info
All Hetero Components
1a: OXYDIMETHANOL (21Ha)
2a: 1,2-ETHANEDIOL (EDOa)
2b: 1,2-ETHANEDIOL (EDOb)
2c: 1,2-ETHANEDIOL (EDOc)
2d: 1,2-ETHANEDIOL (EDOd)
2e: 1,2-ETHANEDIOL (EDOe)
2f: 1,2-ETHANEDIOL (EDOf)
2g: 1,2-ETHANEDIOL (EDOg)
2h: 1,2-ETHANEDIOL (EDOh)
2i: 1,2-ETHANEDIOL (EDOi)
2j: 1,2-ETHANEDIOL (EDOj)
3a: IODIDE ION (IODa)
4a: SODIUM ION (NAa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
21H
1
Ligand/Ion
OXYDIMETHANOL
2
EDO
10
Ligand/Ion
1,2-ETHANEDIOL
3
IOD
1
Ligand/Ion
IODIDE ION
4
NA
1
Ligand/Ion
SODIUM ION
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Sites
(13, 13)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
View:
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLY A:143 , VAL A:147 , GLU A:151 , HOH A:412
BINDING SITE FOR RESIDUE EDO A 201
02
AC2
SOFTWARE
LYS A:99 , LYS A:102 , EDO A:209 , HOH A:308 , HOH A:425
BINDING SITE FOR RESIDUE EDO A 202
03
AC3
SOFTWARE
ILE A:100 , ILE A:101 , LYS A:102 , THR A:103 , ASN A:135 , HOH A:450
BINDING SITE FOR RESIDUE EDO A 203
04
AC4
SOFTWARE
TRP A:75 , LYS A:76 , HIS A:77 , GLN A:84 , HOH A:343 , HOH A:385
BINDING SITE FOR RESIDUE EDO A 204
05
AC5
SOFTWARE
LYS A:155 , LEU A:158 , GLN A:159 , HOH A:384 , HOH A:410
BINDING SITE FOR RESIDUE EDO A 205
06
AC6
SOFTWARE
PRO A:82 , GLN A:85 , PRO A:86 , VAL A:87 , ASP A:88 , LEU A:92 , EDO A:207 , HOH A:457
BINDING SITE FOR RESIDUE EDO A 206
07
AC7
SOFTWARE
TRP A:81 , PRO A:82 , LEU A:92 , EDO A:206 , EDO A:208 , HOH A:371 , HOH A:436
BINDING SITE FOR RESIDUE EDO A 207
08
AC8
SOFTWARE
TRP A:81 , LYS A:99 , ILE A:146 , EDO A:207 , HOH A:425 , HOH A:453
BINDING SITE FOR RESIDUE EDO A 208
09
AC9
SOFTWARE
LYS A:57 , ARG A:58 , GLN A:59 , EDO A:202
BINDING SITE FOR RESIDUE EDO A 209
10
BC1
SOFTWARE
GLN A:59 , GLN A:64 , ARG A:68 , HOH A:365 , HOH A:434
BINDING SITE FOR RESIDUE EDO A 210
11
BC2
SOFTWARE
GLN A:64
BINDING SITE FOR RESIDUE IOD A 211
12
BC3
SOFTWARE
TYR A:137 , ILE A:138 , ASN A:140 , GLU A:163 , 21H A:213 , HOH A:469
BINDING SITE FOR RESIDUE NA A 212
13
BC4
SOFTWARE
THR A:134 , TYR A:137 , LYS A:160 , GLU A:163 , NA A:212 , HOH A:403
BINDING SITE FOR RESIDUE 21H A 213
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d4lyia_ (A:)
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Protein Domains
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Organisms
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Class
:
All alpha proteins
(14657)
Fold
:
Bromodomain-like
(339)
Superfamily
:
Bromodomain
(203)
Family
:
automated matches
(169)
Protein domain
:
automated matches
(169)
Human (Homo sapiens) [TaxId: 9606]
(162)
1a
d4lyia_
A:
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CATH Domains
(0, 0)
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all CATH domains
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Sorry, no Info available
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Pfam Domains
(0, 0)
Info
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Chain A
Asymmetric Unit 1
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Asym.Unit (55 KB)
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