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4LY8
Asym. Unit
Info
Asym.Unit (421 KB)
Biol.Unit 1 (413 KB)
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(1)
Title
:
DIHYDRODIPICOLINATE SYNTHASE FROM C. JEJUNI WITH PYRUVATE BOUND TO THE ACTIVE SITE
Authors
:
C. J. T. Conly
Date
:
30 Jul 13 (Deposition) - 14 Jan 15 (Release) - 14 Jan 15 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.70
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D (1x)
Keywords
:
Schiff-Base, Aldolase, Tim Barrel, Type 1 Aldolase Catalysing Condensation Of Pyruvate And S-Aspartate-B-Semi-Aldehyde, Lyase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
C. J. Conly, Y. V. Skovpen, S. Li, D. R. Palmer, D. A. Sanders
Tyrosine 110 Plays A Critical Role In Regulating The Allosteric Inhibition Of Campylobacter Jejuni Dihydrodipicolinate Synthase By Lysine.
Biochemistry V. 53 7396 2014
[
close entry info
]
Hetero Components
(6, 46)
Info
All Hetero Components
1a: ACETATE ION (ACTa)
1b: ACETATE ION (ACTb)
1c: ACETATE ION (ACTc)
2a: 1,2-ETHANEDIOL (EDOa)
2b: 1,2-ETHANEDIOL (EDOb)
2c: 1,2-ETHANEDIOL (EDOc)
2d: 1,2-ETHANEDIOL (EDOd)
2e: 1,2-ETHANEDIOL (EDOe)
2f: 1,2-ETHANEDIOL (EDOf)
2g: 1,2-ETHANEDIOL (EDOg)
2h: 1,2-ETHANEDIOL (EDOh)
2i: 1,2-ETHANEDIOL (EDOi)
2j: 1,2-ETHANEDIOL (EDOj)
2k: 1,2-ETHANEDIOL (EDOk)
2l: 1,2-ETHANEDIOL (EDOl)
2m: 1,2-ETHANEDIOL (EDOm)
2n: 1,2-ETHANEDIOL (EDOn)
2o: 1,2-ETHANEDIOL (EDOo)
2p: 1,2-ETHANEDIOL (EDOp)
2q: 1,2-ETHANEDIOL (EDOq)
2r: 1,2-ETHANEDIOL (EDOr)
2s: 1,2-ETHANEDIOL (EDOs)
2t: 1,2-ETHANEDIOL (EDOt)
2u: 1,2-ETHANEDIOL (EDOu)
3a: GLYCEROL (GOLa)
3b: GLYCEROL (GOLb)
3c: GLYCEROL (GOLc)
3d: GLYCEROL (GOLd)
3e: GLYCEROL (GOLe)
4a: (2S)-2-AMINO-6-[(1-HYDROXY-1-OXO-P... (KPIa)
4b: (2S)-2-AMINO-6-[(1-HYDROXY-1-OXO-P... (KPIb)
4c: (2S)-2-AMINO-6-[(1-HYDROXY-1-OXO-P... (KPIc)
4d: (2S)-2-AMINO-6-[(1-HYDROXY-1-OXO-P... (KPId)
5a: TETRAETHYLENE GLYCOL (PG4a)
5b: TETRAETHYLENE GLYCOL (PG4b)
6a: TRIETHYLENE GLYCOL (PGEa)
6b: TRIETHYLENE GLYCOL (PGEb)
6c: TRIETHYLENE GLYCOL (PGEc)
6d: TRIETHYLENE GLYCOL (PGEd)
6e: TRIETHYLENE GLYCOL (PGEe)
6f: TRIETHYLENE GLYCOL (PGEf)
6g: TRIETHYLENE GLYCOL (PGEg)
6h: TRIETHYLENE GLYCOL (PGEh)
6i: TRIETHYLENE GLYCOL (PGEi)
6j: TRIETHYLENE GLYCOL (PGEj)
6k: TRIETHYLENE GLYCOL (PGEk)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ACT
3
Ligand/Ion
ACETATE ION
2
EDO
21
Ligand/Ion
1,2-ETHANEDIOL
3
GOL
5
Ligand/Ion
GLYCEROL
4
KPI
4
Mod. Amino Acid
(2S)-2-AMINO-6-[(1-HYDROXY-1-OXO-PROPAN-2-YLIDENE)AMINO]HEXANOIC ACID
5
PG4
2
Ligand/Ion
TETRAETHYLENE GLYCOL
6
PGE
11
Ligand/Ion
TRIETHYLENE GLYCOL
[
close Hetero Component info
]
Sites
(39, 39)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
30: DC3 (SOFTWARE)
31: DC4 (SOFTWARE)
32: DC5 (SOFTWARE)
33: DC6 (SOFTWARE)
34: DC7 (SOFTWARE)
35: DC8 (SOFTWARE)
36: DC9 (SOFTWARE)
37: EC1 (SOFTWARE)
38: EC2 (SOFTWARE)
39: EC3 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
HIS A:223 , PHE A:224
BINDING SITE FOR RESIDUE EDO A 301
02
AC2
SOFTWARE
GLY A:20 , ARG A:272 , PGE A:304
BINDING SITE FOR RESIDUE PGE A 302
03
AC3
SOFTWARE
ALA A:127 , GLN A:128 , VAL A:130 , ASP A:131 , ASN A:161
BINDING SITE FOR RESIDUE EDO A 303
04
AC4
SOFTWARE
PHE A:271 , ARG A:272 , LEU A:273 , PGE A:302 , HOH A:434
BINDING SITE FOR RESIDUE PGE A 304
05
AC5
SOFTWARE
MET A:186 , LYS A:204
BINDING SITE FOR RESIDUE PGE A 305
06
AC6
SOFTWARE
ASP A:238 , GLU A:239 , TYR A:241 , ASN A:242 , HIS B:181
BINDING SITE FOR RESIDUE EDO A 306
07
AC7
SOFTWARE
ALA A:263 , GLY A:264 , ILE A:295 , GLY A:297 , HOH A:523
BINDING SITE FOR RESIDUE PGE A 307
08
AC8
SOFTWARE
GLU A:36 , EDO D:303
BINDING SITE FOR RESIDUE ACT A 308
09
AC9
SOFTWARE
SER A:200 , GLY A:202 , TYR A:230 , LYS B:234
BINDING SITE FOR RESIDUE EDO A 309
10
BC1
SOFTWARE
THR A:149 , ASP A:150 , ASP A:177 , HIS A:181 , ACT A:312
BINDING SITE FOR RESIDUE GOL A 310
11
BC2
SOFTWARE
PRO A:278
BINDING SITE FOR RESIDUE EDO A 311
12
BC3
SOFTWARE
ARG A:157 , GOL A:310
BINDING SITE FOR RESIDUE ACT A 312
13
BC4
SOFTWARE
GLN A:117 , TYR A:120 , ASP A:150 , LYS A:154
BINDING SITE FOR RESIDUE PG4 A 313
14
BC5
SOFTWARE
SER A:51 , LEU A:54 , HIS A:56 , HIS A:59 , HOH A:444 , HOH A:488
BINDING SITE FOR RESIDUE GOL A 314
15
BC6
SOFTWARE
GLN B:117 , ASP B:150 , THR B:151 , LYS B:154
BINDING SITE FOR RESIDUE PGE B 301
16
BC7
SOFTWARE
ARG B:142 , KPI B:166 , PHE B:248 , ASN B:252 , HOH B:472
BINDING SITE FOR RESIDUE GOL B 302
17
BC8
SOFTWARE
MET B:186 , LYS B:204 , LEU B:226 , LYS C:231
BINDING SITE FOR RESIDUE PGE B 303
18
BC9
SOFTWARE
ILE B:7 , LEU B:226
BINDING SITE FOR RESIDUE EDO B 304
19
CC1
SOFTWARE
TYR B:261 , LEU B:262
BINDING SITE FOR RESIDUE PGE B 305
20
CC2
SOFTWARE
HIS B:223 , PHE B:224 , ASP B:227 , HOH D:496
BINDING SITE FOR RESIDUE PGE B 306
21
CC3
SOFTWARE
SER B:51 , LEU B:54 , HIS B:56 , HIS B:59
BINDING SITE FOR RESIDUE GOL B 307
22
CC4
SOFTWARE
ASP B:150 , ASP B:177 , HIS B:181
BINDING SITE FOR RESIDUE EDO B 308
23
CC5
SOFTWARE
ARG B:29 , ARG B:33 , PHE B:298
BINDING SITE FOR RESIDUE EDO B 309
24
CC6
SOFTWARE
GLN C:117 , TYR C:120 , THR C:151 , LYS C:154 , HOH C:511 , HOH C:527
BINDING SITE FOR RESIDUE PG4 C 301
25
CC7
SOFTWARE
VAL C:90 , LYS C:94
BINDING SITE FOR RESIDUE EDO C 302
26
CC8
SOFTWARE
GLY C:91 , LEU C:92
BINDING SITE FOR RESIDUE EDO C 303
27
CC9
SOFTWARE
ILE C:7 , MET C:186 , LYS C:204 , LEU C:226
BINDING SITE FOR RESIDUE PGE C 304
28
DC1
SOFTWARE
ALA C:263 , GLY C:297
BINDING SITE FOR RESIDUE EDO C 305
29
DC2
SOFTWARE
PHE C:224
BINDING SITE FOR RESIDUE EDO C 306
30
DC3
SOFTWARE
ASP C:150 , ASP C:177 , HIS C:181
BINDING SITE FOR RESIDUE EDO C 307
31
DC4
SOFTWARE
PRO C:140 , GLY C:141 , SER C:169 , HOH C:466
BINDING SITE FOR RESIDUE PGE C 308
32
DC5
SOFTWARE
ARG C:142 , PHE C:248 , SER C:251 , ASN C:252
BINDING SITE FOR RESIDUE ACT C 309
33
DC6
SOFTWARE
GLN D:117 , TYR D:120 , ASP D:150 , THR D:151 , LYS D:154
BINDING SITE FOR RESIDUE PGE D 301
34
DC7
SOFTWARE
LEU D:54 , HIS D:56 , HIS D:59 , HOH D:494 , HOH D:538
BINDING SITE FOR RESIDUE GOL D 302
35
DC8
SOFTWARE
ACT A:308 , TYR D:261
BINDING SITE FOR RESIDUE EDO D 303
36
DC9
SOFTWARE
LYS C:234 , SER D:200 , GLY D:202 , TYR D:230
BINDING SITE FOR RESIDUE EDO D 304
37
EC1
SOFTWARE
HOH B:467 , HOH D:438
BINDING SITE FOR RESIDUE EDO D 307
38
EC2
SOFTWARE
HIS D:223
BINDING SITE FOR RESIDUE EDO D 308
39
EC3
SOFTWARE
ASP D:2 , LYS D:3 , PHE D:156 , ARG D:184
BINDING SITE FOR RESIDUE EDO D 309
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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Sorry, no Info available
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PROSITE Patterns/Profiles
(0, 0)
Info
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;
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Exons
(0, 0)
Info
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(0, 0)
Info
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
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Info
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Sorry, no Info available
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