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4LXX
Asym. Unit
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Asym.Unit (120 KB)
Biol.Unit 1 (114 KB)
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(1)
Title
:
CRYSTAL STRUCTURE WLARD, A SUGAR 3N-FORMYL TRANSFERASE IN THE PRESENCE OF DTDP-FUC3NFO AND 5-N-FORMYL-THF
Authors
:
J. B. Thoden, M. -F. Goneau, M. Gilbert, H. M. Holden
Date
:
30 Jul 13 (Deposition) - 14 Aug 13 (Release) - 05 Feb 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.45
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Fmt, Formyltransferase, Formylation, Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
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)
Reference
:
J. B. Thoden, M. F. Goneau, M. Gilbert, H. M. Holden
Structure Of A Sugar N-Formyltransferase From Campylobacter Jejuni.
Biochemistry V. 52 6114 2013
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Hetero Components
(5, 13)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
2a: 1,2-ETHANEDIOL (EDOa)
2b: 1,2-ETHANEDIOL (EDOb)
2c: 1,2-ETHANEDIOL (EDOc)
2d: 1,2-ETHANEDIOL (EDOd)
3a: (2R,3R,4S,5R,6R)-4-(FORMYLAMINO)-3... (FNFa)
3b: (2R,3R,4S,5R,6R)-4-(FORMYLAMINO)-3... (FNFb)
4a: N-{[4-({[(6R)-2-AMINO-5-FORMYL-4-O... (FONa)
4b: N-{[4-({[(6R)-2-AMINO-5-FORMYL-4-O... (FONb)
5a: 3[N-MORPHOLINO]PROPANE SULFONIC AC... (MPOa)
5b: 3[N-MORPHOLINO]PROPANE SULFONIC AC... (MPOb)
5c: 3[N-MORPHOLINO]PROPANE SULFONIC AC... (MPOc)
5d: 3[N-MORPHOLINO]PROPANE SULFONIC AC... (MPOd)
View:
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Label:
No.
Name
Count
Type
Full Name
1
CL
1
Ligand/Ion
CHLORIDE ION
2
EDO
4
Ligand/Ion
1,2-ETHANEDIOL
3
FNF
2
Ligand/Ion
(2R,3R,4S,5R,6R)-4-(FORMYLAMINO)-3,5-DIHYDROXY-6-METHYLTETRAHYDRO-2H-PYRAN-2-YL [(2R,3S,5R)-3-HYDROXY-5-(5-METHYL-2,4-DIOXO-3,4-DIHYDROPYRIMIDIN-1(2H)-YL)TETRAHYDROFURAN-2-YL]METHYL DIHYDROGEN DIPHOSPHATE(NON-PREFERRED NAME)
4
FON
2
Ligand/Ion
N-{[4-({[(6R)-2-AMINO-5-FORMYL-4-OXO-1,4,5,6,7,8-HEXAHYDROPTERIDIN-6-YL]METHYL}AMINO)PHENYL]CARBONYL}-L-GLUTAMIC ACID
5
MPO
4
Ligand/Ion
3[N-MORPHOLINO]PROPANE SULFONIC ACID
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Sites
(13, 13)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
SER A:75 , PHE A:78 , GLN A:80 , ILE A:81 , ILE A:82 , ASN A:94 , HIS A:125 , ILE A:127 , ASP A:128 , ASN A:129 , GLY A:130 , ASP A:132 , SER A:191 , ARG A:192 , FNF A:304 , HOH A:403 , HOH A:439 , HOH A:456 , HOH A:820 , EDO B:305
BINDING SITE FOR RESIDUE FON A 301
02
AC2
SOFTWARE
PHE A:203 , ILE A:227 , ASN A:228 , PHE A:247 , HOH A:489 , HOH A:528 , HOH A:576
BINDING SITE FOR RESIDUE MPO A 302
03
AC3
SOFTWARE
ILE A:84 , ASP A:128 , ASN A:129 , ASN A:135 , HOH A:485 , HOH A:547 , HOH A:722 , PHE B:241 , TYR B:244 , HOH B:493
BINDING SITE FOR RESIDUE MPO A 303
04
AC4
SOFTWARE
LYS A:9 , GLU A:77 , PHE A:78 , ASN A:94 , HIS A:96 , GLY A:105 , VAL A:106 , PHE A:107 , THR A:108 , SER A:109 , ASP A:132 , TYR A:154 , ARG A:192 , LEU A:197 , PHE A:219 , TYR A:222 , GLN A:223 , FON A:301 , HOH A:418 , HOH A:422 , HOH A:429 , HOH A:467 , HOH A:481 , HOH A:510 , HOH A:569 , HOH A:696 , HOH A:751 , HOH A:753
BINDING SITE FOR RESIDUE FNF A 304
05
AC5
SOFTWARE
ARG A:126 , ASN A:135 , HOH A:485 , HOH A:624
BINDING SITE FOR RESIDUE CL A 305
06
AC6
SOFTWARE
SER B:75 , PHE B:78 , GLN B:80 , ILE B:81 , ILE B:82 , ASN B:94 , HIS B:125 , ILE B:127 , ASP B:128 , ASN B:129 , GLY B:130 , ASP B:132 , SER B:191 , ARG B:192 , FNF B:304 , HOH B:457 , HOH B:497 , HOH B:498
BINDING SITE FOR RESIDUE FON B 301
07
AC7
SOFTWARE
PHE B:203 , ILE B:227 , ASN B:228 , PHE B:247 , HOH B:490 , HOH B:495 , HOH B:544 , HOH B:630
BINDING SITE FOR RESIDUE MPO B 302
08
AC8
SOFTWARE
PHE A:241 , TYR A:244 , ASP B:128 , ASN B:129 , ASN B:135 , HOH B:412 , HOH B:518 , HOH B:565 , HOH B:714
BINDING SITE FOR RESIDUE MPO B 303
09
AC9
SOFTWARE
LYS B:9 , GLU B:77 , PHE B:78 , ASN B:94 , HIS B:96 , GLY B:105 , VAL B:106 , PHE B:107 , THR B:108 , SER B:109 , ASP B:132 , TYR B:154 , ARG B:192 , LEU B:197 , PHE B:219 , TYR B:222 , GLN B:223 , FON B:301 , HOH B:404 , HOH B:426 , HOH B:519 , HOH B:575 , HOH B:576 , HOH B:646 , HOH B:729
BINDING SITE FOR RESIDUE FNF B 304
10
BC1
SOFTWARE
ILE A:131 , FON A:301 , ASN B:245 , ILE B:259 , HOH B:423
BINDING SITE FOR RESIDUE EDO B 305
11
BC2
SOFTWARE
ARG B:151 , GLN B:220 , GLU B:221 , HOH B:439 , HOH B:712
BINDING SITE FOR RESIDUE EDO B 306
12
BC3
SOFTWARE
TRP B:44 , ARG B:151 , LEU B:269 , LYS B:271 , LEU B:272 , HOH B:597
BINDING SITE FOR RESIDUE EDO B 307
13
BC4
SOFTWARE
ILE A:242 , HOH A:613 , HOH A:674 , PHE B:241 , GLY B:243 , HOH B:493 , HOH B:718
BINDING SITE FOR RESIDUE EDO B 308
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SAPs(SNPs)/Variants
(0, 0)
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Asymmetric Unit 1
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